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STREME - Sensitive, Thorough, Rapid, Enriched Motif Elicitation
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MEME version 5.3.3 (Release date: Sun Feb 7 15:39:52 2021 -0800)

For further information on how to interpret these results please access https://meme-suite.org/meme.
To get a copy of the MEME Suite software please access https://meme-suite.org.

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REFERENCE
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If you use this program in your research, please cite:

Timothy L. Bailey,
"STREME: Accurate and versatile sequence motif discovery",
bioRxiv, (preprint), Nov. 23, 2020.
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ALPHABET= ACGT

strands: + -

Background letter frequencies
A 0.241 C 0.259 G 0.259 T 0.241 

MOTIF 1-TCGTAAAR STREME-1
letter-probability matrix: alength= 4 w= 8 nsites= 130 P= 9.0e-003
 0.000316 0.292687 0.000340 0.706658
 0.000316 0.822740 0.176628 0.000316
 0.000316 0.000340 0.999029 0.000316
 0.000316 0.132816 0.000340 0.866528
 0.916589 0.000340 0.082755 0.000316
 0.809851 0.000340 0.189494 0.000316
 0.971710 0.027634 0.000340 0.000316
 0.353673 0.055239 0.517713 0.073375

MOTIF 2-CCAATCAG STREME-2
letter-probability matrix: alength= 4 w= 8 nsites= 46 P= 2.5e-002
 0.001006 0.996906 0.001082 0.001006
 0.001006 0.967864 0.001082 0.030048
 0.967881 0.001082 0.001082 0.029954
 0.996830 0.001082 0.001082 0.001006
 0.001006 0.001082 0.001082 0.996830
 0.001006 0.996906 0.001082 0.001006
 0.967881 0.001082 0.030030 0.001006
 0.059089 0.001082 0.938822 0.001006

MOTIF 3-CCCACCCA STREME-3
letter-probability matrix: alength= 4 w= 8 nsites= 28 P= 9.5e-002
 0.021900 0.932645 0.023555 0.021900
 0.021900 0.932645 0.023555 0.021900
 0.021900 0.932645 0.023555 0.021900
 0.930991 0.023555 0.023555 0.021900
 0.021900 0.932645 0.023555 0.021900
 0.021900 0.932645 0.023555 0.021900
 0.021900 0.932645 0.023555 0.021900
 0.930991 0.023555 0.023555 0.021900

MOTIF 4-CCSAGTGG STREME-4
letter-probability matrix: alength= 4 w= 8 nsites= 26 P= 2.4e-001
 0.001217 0.961233 0.001309 0.036241
 0.001217 0.996256 0.001309 0.001217
 0.040489 0.428562 0.318912 0.212037
 0.996164 0.001309 0.001309 0.001217
 0.001217 0.001309 0.996256 0.001217
 0.001217 0.001309 0.001309 0.996164
 0.071264 0.071356 0.856163 0.001217
 0.001217 0.001309 0.996256 0.001217

MOTIF 5-CAGATAAG STREME-5
letter-probability matrix: alength= 4 w= 8 nsites= 42 P= 5.0e-001
 0.099227 0.771864 0.001072 0.127837
 0.812332 0.001072 0.001072 0.185524
 0.029670 0.001072 0.968262 0.000997
 0.939513 0.029745 0.001072 0.029670
 0.000997 0.001072 0.001072 0.996860
 0.939421 0.001072 0.001072 0.058436
 0.956317 0.001072 0.001072 0.041540
 0.000997 0.001072 0.968262 0.029670

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Stopped because maximum number of motifs (5) reached.
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COMMAND:	streme --p ../result/final_prediction/K562/fasta/RankLinear5.0_60/E4F1.fasta --oc ../result/final_prediction/K562/inference_raw/STREME/RankLinear5.0_60_E4F1/ --w 8 --nmotifs 5 --verbosity 1
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CPU:		c22n08.farnam.hpc.yale.internal
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FINALTIME:	2.46 seconds
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