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STREME - Sensitive, Thorough, Rapid, Enriched Motif Elicitation
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MEME version 5.3.3 (Release date: Sun Feb 7 15:39:52 2021 -0800)

For further information on how to interpret these results please access https://meme-suite.org/meme.
To get a copy of the MEME Suite software please access https://meme-suite.org.

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REFERENCE
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If you use this program in your research, please cite:

Timothy L. Bailey,
"STREME: Accurate and versatile sequence motif discovery",
bioRxiv, (preprint), Nov. 23, 2020.
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ALPHABET= ACGT

strands: + -

Background letter frequencies
A 0.245 C 0.255 G 0.255 T 0.245 

MOTIF 1-CCTGACTC STREME-1
letter-probability matrix: alength= 4 w= 8 nsites= 33 P= 1.7e-001
 0.039955 0.882974 0.001418 0.075653
 0.017312 0.956588 0.008788 0.017312
 0.001361 0.001418 0.001418 0.995802
 0.039893 0.001418 0.949958 0.008731
 0.879836 0.001418 0.001418 0.117328
 0.039893 0.786672 0.094888 0.078548
 0.001361 0.039949 0.039949 0.918740
 0.078548 0.892037 0.008788 0.020627

MOTIF 2-GGCGGGAA STREME-2
letter-probability matrix: alength= 4 w= 8 nsites= 47 P= 3.0e-001
 0.022264 0.023191 0.932282 0.022264
 0.022264 0.023191 0.932282 0.022264
 0.022264 0.932282 0.023191 0.022264
 0.022264 0.023191 0.932282 0.022264
 0.022264 0.023191 0.932282 0.022264
 0.022264 0.023191 0.932282 0.022264
 0.931355 0.023191 0.023191 0.022264
 0.931355 0.023191 0.023191 0.022264

MOTIF 3-AACACGGA STREME-3
letter-probability matrix: alength= 4 w= 8 nsites= 22 P= 7.6e-001
 0.994313 0.001921 0.001921 0.001844
 0.837714 0.001921 0.054121 0.106244
 0.001844 0.994390 0.001921 0.001844
 0.837546 0.158689 0.001921 0.001844
 0.210812 0.785423 0.001921 0.001844
 0.001844 0.158521 0.785591 0.054044
 0.001844 0.054121 0.733223 0.210812
 0.889914 0.001921 0.054121 0.054044

MOTIF 4-AATCACAA STREME-4
letter-probability matrix: alength= 4 w= 8 nsites= 21 P= 1.0e+000
 0.877594 0.021843 0.098851 0.001712
 0.946265 0.001783 0.050239 0.001712
 0.001712 0.001783 0.001783 0.994721
 0.050246 0.829131 0.098851 0.021771
 0.888541 0.050239 0.050239 0.010980
 0.001712 0.730884 0.245633 0.021771
 0.946265 0.001783 0.001783 0.050168
 0.946265 0.001783 0.001783 0.050168

MOTIF 5-AGCCGAGG STREME-5
letter-probability matrix: alength= 4 w= 8 nsites= 18 P= 1.0e+000
 0.939067 0.056970 0.002022 0.001941
 0.001941 0.002022 0.884024 0.112013
 0.056889 0.884200 0.002022 0.056889
 0.001941 0.994095 0.002022 0.001941
 0.056889 0.278538 0.607685 0.056889
 0.994014 0.002022 0.002022 0.001941
 0.001941 0.056970 0.939148 0.001941
 0.001941 0.002022 0.939148 0.056889

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Stopped because maximum number of motifs (5) reached.
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COMMAND:	streme --p ../result/final_prediction/K562/fasta/RankLinear5.0_60/E2F7.fasta --oc ../result/final_prediction/K562/inference_raw/STREME/RankLinear5.0_60_E2F7/ --w 8 --nmotifs 5 --verbosity 1
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CPU:		c22n04.farnam.hpc.yale.internal
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FINALTIME:	1.67 seconds
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