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STREME - Sensitive, Thorough, Rapid, Enriched Motif Elicitation
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MEME version 5.3.3 (Release date: Sun Feb 7 15:39:52 2021 -0800)

For further information on how to interpret these results please access https://meme-suite.org/meme.
To get a copy of the MEME Suite software please access https://meme-suite.org.

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REFERENCE
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If you use this program in your research, please cite:

Timothy L. Bailey,
"STREME: Accurate and versatile sequence motif discovery",
bioRxiv, (preprint), Nov. 23, 2020.
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ALPHABET= ACGT

strands: + -

Background letter frequencies
A 0.176 C 0.324 G 0.324 T 0.176 

MOTIF 1-GTGCTGAA STREME-1
letter-probability matrix: alength= 4 w= 8 nsites= 40 P= 1.2e-001
 0.000801 0.001479 0.996919 0.000801
 0.000801 0.001479 0.001479 0.996242
 0.000801 0.128505 0.869893 0.000801
 0.000801 0.996919 0.001479 0.000801
 0.000801 0.001479 0.001479 0.996242
 0.064109 0.001479 0.870302 0.064109
 0.964638 0.001479 0.001479 0.032404
 0.837612 0.128505 0.001479 0.032404

MOTIF 2-ATGGACAG STREME-2
letter-probability matrix: alength= 4 w= 8 nsites= 67 P= 2.3e-001
 0.923563 0.024172 0.028588 0.023677
 0.093739 0.187656 0.024246 0.694359
 0.079418 0.093594 0.803311 0.023677
 0.010144 0.028588 0.845151 0.116116
 0.941512 0.024172 0.024172 0.010144
 0.093099 0.710797 0.139777 0.056327
 0.900398 0.070429 0.028588 0.000585
 0.023677 0.079913 0.840083 0.056327

MOTIF 3-KCCCGGGM STREME-3
letter-probability matrix: alength= 4 w= 8 nsites= 18 P= 5.0e-001
 0.004236 0.001638 0.437153 0.556972
 0.000888 0.845477 0.100167 0.053469
 0.117467 0.817884 0.001638 0.063010
 0.000888 0.996586 0.001638 0.000888
 0.000888 0.001638 0.996586 0.000888
 0.063010 0.001638 0.817884 0.117467
 0.053469 0.100167 0.845477 0.000888
 0.556972 0.437153 0.001638 0.004236

MOTIF 4-AAACCATA STREME-4
letter-probability matrix: alength= 4 w= 8 nsites= 17 P= 7.6e-001
 0.919110 0.075675 0.003382 0.001832
 0.919110 0.075675 0.003382 0.001832
 0.919110 0.075675 0.003382 0.001832
 0.074125 0.920660 0.003382 0.001832
 0.001832 0.992953 0.003382 0.001832
 0.919110 0.075675 0.003382 0.001832
 0.123425 0.003382 0.148200 0.724992
 0.701999 0.075675 0.075675 0.146651

MOTIF 5-CCCGCCCC STREME-5
letter-probability matrix: alength= 4 w= 8 nsites= 46 P= 9.5e-001
 0.015973 0.938573 0.029482 0.015973
 0.015973 0.938573 0.029482 0.015973
 0.015973 0.938573 0.029482 0.015973
 0.015973 0.029482 0.938573 0.015973
 0.015973 0.938573 0.029482 0.015973
 0.015973 0.938573 0.029482 0.015973
 0.015973 0.938573 0.029482 0.015973
 0.015973 0.938573 0.029482 0.015973

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Stopped because maximum number of motifs (5) reached.
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COMMAND:	streme --p ../result/final_prediction/K562/fasta/RankLinear5.0_60/E2F5.fasta --oc ../result/final_prediction/K562/inference_raw/STREME/RankLinear5.0_60_E2F5/ --w 8 --nmotifs 5 --verbosity 1
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CPU:		c23n01.farnam.hpc.yale.internal
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FINALTIME:	2.24 seconds
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