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STREME - Sensitive, Thorough, Rapid, Enriched Motif Elicitation
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MEME version 5.3.3 (Release date: Sun Feb 7 15:39:52 2021 -0800)

For further information on how to interpret these results please access https://meme-suite.org/meme.
To get a copy of the MEME Suite software please access https://meme-suite.org.

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REFERENCE
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If you use this program in your research, please cite:

Timothy L. Bailey,
"STREME: Accurate and versatile sequence motif discovery",
bioRxiv, (preprint), Nov. 23, 2020.
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ALPHABET= ACGT

strands: + -

Background letter frequencies
A 0.223 C 0.277 G 0.277 T 0.223 

MOTIF 1-TCCCGCCA STREME-1
letter-probability matrix: alength= 4 w= 8 nsites= 172 P= 1.7e-005
 0.020273 0.001656 0.054940 0.923131
 0.009864 0.988572 0.001257 0.000307
 0.035749 0.884234 0.079710 0.000307
 0.005078 0.959042 0.016429 0.019451
 0.005078 0.005152 0.984693 0.005078
 0.000307 0.997180 0.002206 0.000307
 0.000307 0.979891 0.019494 0.000307
 0.701567 0.101540 0.048632 0.148261

MOTIF 2-ACTGCAAG STREME-2
letter-probability matrix: alength= 4 w= 8 nsites= 41 P= 5.0e-001
 0.937323 0.025803 0.011263 0.025611
 0.025611 0.947787 0.025803 0.000799
 0.025611 0.025803 0.000991 0.947595
 0.000799 0.000991 0.997412 0.000799
 0.000799 0.947707 0.000991 0.050503
 0.972407 0.000991 0.025803 0.000799
 0.972407 0.000991 0.000991 0.025611
 0.125663 0.050695 0.798030 0.025611

MOTIF 3-CCAGCTAC STREME-3
letter-probability matrix: alength= 4 w= 8 nsites= 40 P= 5.0e-001
 0.028135 0.969899 0.001089 0.000877
 0.028135 0.942641 0.028346 0.000877
 0.832783 0.001089 0.055692 0.110436
 0.028135 0.055692 0.888038 0.028135
 0.028135 0.915296 0.001089 0.055480
 0.000877 0.001089 0.001089 0.996945
 0.996945 0.001089 0.001089 0.000877
 0.000877 0.942554 0.001089 0.055480

MOTIF 4-CCTCCCAA STREME-4
letter-probability matrix: alength= 4 w= 8 nsites= 27 P= 7.6e-001
 0.020282 0.934264 0.025173 0.020282
 0.020282 0.934264 0.025173 0.020282
 0.020282 0.025173 0.025173 0.929373
 0.020282 0.934264 0.025173 0.020282
 0.020282 0.934264 0.025173 0.020282
 0.020282 0.934264 0.025173 0.020282
 0.929373 0.025173 0.025173 0.020282
 0.929373 0.025173 0.025173 0.020282

MOTIF 5-ACTACAGG STREME-5
letter-probability matrix: alength= 4 w= 8 nsites= 24 P= 1.0e+000
 0.929373 0.025173 0.025173 0.020282
 0.020282 0.934264 0.025173 0.020282
 0.020282 0.025173 0.025173 0.929373
 0.929373 0.025173 0.025173 0.020282
 0.020282 0.934264 0.025173 0.020282
 0.929373 0.025173 0.025173 0.020282
 0.020282 0.025173 0.934264 0.020282
 0.020282 0.025173 0.934264 0.020282

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Stopped because maximum number of motifs (5) reached.
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COMMAND:	streme --p ../result/final_prediction/K562/fasta/RankLinear5.0_60/E2F1.fasta --oc ../result/final_prediction/K562/inference_raw/STREME/RankLinear5.0_60_E2F1/ --w 8 --nmotifs 5 --verbosity 1
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CPU:		c22n07.farnam.hpc.yale.internal
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FINALTIME:	3.85 seconds
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