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STREME - Sensitive, Thorough, Rapid, Enriched Motif Elicitation
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MEME version 5.3.3 (Release date: Sun Feb 7 15:39:52 2021 -0800)

For further information on how to interpret these results please access https://meme-suite.org/meme.
To get a copy of the MEME Suite software please access https://meme-suite.org.

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REFERENCE
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If you use this program in your research, please cite:

Timothy L. Bailey,
"STREME: Accurate and versatile sequence motif discovery",
bioRxiv, (preprint), Nov. 23, 2020.
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ALPHABET= ACGT

strands: + -

Background letter frequencies
A 0.246 C 0.254 G 0.254 T 0.246 

MOTIF 1-AYAGTAGG STREME-1
letter-probability matrix: alength= 4 w= 8 nsites= 161 P= 5.3e-006
 0.932833 0.000236 0.023175 0.043756
 0.000229 0.448588 0.004141 0.547042
 0.999298 0.000236 0.000236 0.000229
 0.006679 0.001470 0.988397 0.003454
 0.000229 0.000236 0.000236 0.999298
 0.979929 0.006686 0.006696 0.006689
 0.013149 0.000236 0.986386 0.000229
 0.000229 0.000236 0.999306 0.000229

MOTIF 2-GCCTGGCA STREME-2
letter-probability matrix: alength= 4 w= 8 nsites= 62 P= 3.0e-001
 0.022128 0.000783 0.954961 0.022128
 0.012273 0.793380 0.065097 0.129250
 0.033774 0.814111 0.009629 0.142486
 0.000759 0.000783 0.022152 0.976307
 0.058948 0.000783 0.903569 0.036701
 0.039637 0.065097 0.857687 0.037578
 0.045547 0.884979 0.025943 0.043532
 0.976307 0.022152 0.000783 0.000759

MOTIF 3-AATAAACA STREME-3
letter-probability matrix: alength= 4 w= 8 nsites= 39 P= 7.0e-001
 0.931720 0.033565 0.033565 0.001150
 0.895791 0.018632 0.084427 0.001150
 0.038669 0.136645 0.029081 0.795605
 0.866857 0.033565 0.066049 0.033529
 0.937239 0.033617 0.014590 0.014554
 0.918316 0.033565 0.001186 0.046933
 0.001150 0.801611 0.065945 0.131294
 0.834374 0.066049 0.033565 0.066012

MOTIF 4-ACTCAGCA STREME-4
letter-probability matrix: alength= 4 w= 8 nsites= 44 P= 9.5e-001
 0.997242 0.000929 0.000929 0.000900
 0.051704 0.801708 0.000929 0.145658
 0.000900 0.133954 0.000929 0.864216
 0.005751 0.915713 0.067137 0.011399
 0.971880 0.000929 0.026290 0.000900
 0.164524 0.153588 0.670489 0.011399
 0.077229 0.895580 0.026290 0.000900
 0.741314 0.206134 0.051651 0.000900

MOTIF 5-CCCACCTC STREME-5
letter-probability matrix: alength= 4 w= 8 nsites= 18 P= 1.0e+000
 0.002287 0.993068 0.002359 0.002287
 0.002287 0.993068 0.002359 0.002287
 0.131301 0.864053 0.002359 0.002287
 0.992995 0.002359 0.002359 0.002287
 0.066690 0.799649 0.002359 0.131301
 0.002287 0.993068 0.002359 0.002287
 0.002287 0.002359 0.066763 0.928591
 0.002287 0.993068 0.002359 0.002287

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Stopped because maximum number of motifs (5) reached.
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COMMAND:	streme --p ../result/final_prediction/K562/fasta/RankLinear5.0_60/DPF2.fasta --oc ../result/final_prediction/K562/inference_raw/STREME/RankLinear5.0_60_DPF2/ --w 8 --nmotifs 5 --verbosity 1
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CPU:		c17n10.farnam.hpc.yale.internal
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FINALTIME:	1.56 seconds
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