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STREME - Sensitive, Thorough, Rapid, Enriched Motif Elicitation
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MEME version 5.3.3 (Release date: Sun Feb 7 15:39:52 2021 -0800)

For further information on how to interpret these results please access https://meme-suite.org/meme.
To get a copy of the MEME Suite software please access https://meme-suite.org.

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REFERENCE
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If you use this program in your research, please cite:

Timothy L. Bailey,
"STREME: Accurate and versatile sequence motif discovery",
bioRxiv, (preprint), Nov. 23, 2020.
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ALPHABET= ACGT

strands: + -

Background letter frequencies
A 0.278 C 0.222 G 0.222 T 0.278 

MOTIF 1-GCCTCCCA STREME-1
letter-probability matrix: alength= 4 w= 8 nsites= 26 P= 2.4e-001
 0.025300 0.020155 0.929245 0.025300
 0.025300 0.929245 0.020155 0.025300
 0.025300 0.929245 0.020155 0.025300
 0.025300 0.020155 0.020155 0.934391
 0.025300 0.929245 0.020155 0.025300
 0.025300 0.929245 0.020155 0.025300
 0.025300 0.929245 0.020155 0.025300
 0.934391 0.020155 0.020155 0.025300

MOTIF 2-GTGAGCCA STREME-2
letter-probability matrix: alength= 4 w= 8 nsites= 27 P= 2.4e-001
 0.001848 0.001472 0.994832 0.001848
 0.001848 0.001472 0.001472 0.995208
 0.001848 0.001472 0.902627 0.094053
 0.995208 0.001472 0.001472 0.001848
 0.047876 0.001472 0.717279 0.233372
 0.001848 0.902627 0.001472 0.094053
 0.047876 0.948803 0.001472 0.001848
 0.856678 0.001472 0.140002 0.001848

MOTIF 3-CTGTARTC STREME-3
letter-probability matrix: alength= 4 w= 8 nsites= 26 P= 7.0e-001
 0.044424 0.867078 0.001366 0.087132
 0.087270 0.001366 0.001366 0.909998
 0.001715 0.001366 0.995204 0.001715
 0.001715 0.001366 0.001366 0.995553
 0.995553 0.001366 0.001366 0.001715
 0.653333 0.001366 0.343586 0.001715
 0.001715 0.001366 0.001366 0.995553
 0.001715 0.909787 0.001366 0.087132

MOTIF 4-CAGGCTGG STREME-4
letter-probability matrix: alength= 4 w= 8 nsites= 37 P= 8.8e-001
 0.001444 0.893832 0.001150 0.103574
 0.960291 0.001150 0.037114 0.001444
 0.001444 0.001150 0.712210 0.285196
 0.001444 0.001150 0.995962 0.001444
 0.001444 0.814261 0.001150 0.183144
 0.001444 0.001150 0.001150 0.996255
 0.088375 0.001150 0.909030 0.001444
 0.001444 0.001150 0.995962 0.001444

MOTIF 5-GGTCAGGA STREME-5
letter-probability matrix: alength= 4 w= 8 nsites= 16 P= 1.0e+000
 0.002413 0.001923 0.993251 0.002413
 0.002413 0.001923 0.993251 0.002413
 0.002413 0.001923 0.001923 0.993741
 0.062523 0.812728 0.001923 0.122827
 0.993741 0.001923 0.001923 0.002413
 0.122827 0.062032 0.787844 0.027297
 0.002413 0.122336 0.872837 0.002413
 0.933632 0.001923 0.001923 0.062523

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Stopped because maximum number of motifs (5) reached.
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COMMAND:	streme --p ../result/final_prediction/K562/fasta/RankLinear5.0_60/DNMT1.fasta --oc ../result/final_prediction/K562/inference_raw/STREME/RankLinear5.0_60_DNMT1/ --w 8 --nmotifs 5 --verbosity 1
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CPU:		c22n10.farnam.hpc.yale.internal
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FINALTIME:	2.80 seconds
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