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STREME - Sensitive, Thorough, Rapid, Enriched Motif Elicitation
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MEME version 5.3.3 (Release date: Sun Feb 7 15:39:52 2021 -0800)

For further information on how to interpret these results please access https://meme-suite.org/meme.
To get a copy of the MEME Suite software please access https://meme-suite.org.

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REFERENCE
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If you use this program in your research, please cite:

Timothy L. Bailey,
"STREME: Accurate and versatile sequence motif discovery",
bioRxiv, (preprint), Nov. 23, 2020.
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ALPHABET= ACGT

strands: + -

Background letter frequencies
A 0.272 C 0.228 G 0.228 T 0.272 

MOTIF 1-TCYGGGAA STREME-1
letter-probability matrix: alength= 4 w= 8 nsites= 175 P= 4.0e-007
 0.000288 0.000241 0.000241 0.999230
 0.000288 0.999182 0.000241 0.000288
 0.000288 0.391258 0.007591 0.600863
 0.040763 0.029736 0.644740 0.284761
 0.000288 0.000241 0.999182 0.000288
 0.000288 0.000241 0.999182 0.000288
 0.999230 0.000241 0.000241 0.000288
 0.999230 0.000241 0.000241 0.000288

MOTIF 2-ACCCTCAG STREME-2
letter-probability matrix: alength= 4 w= 8 nsites= 113 P= 3.2e-004
 0.948614 0.000365 0.050583 0.000437
 0.000437 0.962851 0.004972 0.031739
 0.033931 0.864094 0.011494 0.090482
 0.000437 0.965338 0.033787 0.000437
 0.000437 0.000365 0.000365 0.998832
 0.002566 0.969635 0.000365 0.027433
 0.976575 0.000365 0.022623 0.000437
 0.033931 0.033859 0.931773 0.000437

MOTIF 3-ATTCATGA STREME-3
letter-probability matrix: alength= 4 w= 8 nsites= 138 P= 1.8e-003
 0.999211 0.000247 0.000247 0.000296
 0.000296 0.066235 0.000247 0.933222
 0.000296 0.015313 0.007768 0.976623
 0.007817 0.952192 0.007768 0.032224
 0.975711 0.000247 0.015313 0.008729
 0.007817 0.022883 0.000247 0.969054
 0.000296 0.012897 0.983399 0.003409
 0.991690 0.000247 0.000247 0.007817

MOTIF 4-ACCATATA STREME-4
letter-probability matrix: alength= 4 w= 8 nsites= 134 P= 2.7e-003
 0.983162 0.000287 0.016206 0.000344
 0.000344 0.830356 0.142615 0.026685
 0.009094 0.928340 0.009037 0.053529
 0.937220 0.000287 0.026750 0.035742
 0.026678 0.009037 0.009037 0.955248
 0.946284 0.017787 0.035585 0.000344
 0.000344 0.026621 0.009051 0.963984
 0.999082 0.000287 0.000287 0.000344

MOTIF 5-GGGGTGGA STREME-5
letter-probability matrix: alength= 4 w= 8 nsites= 156 P= 3.6e-002
 0.041197 0.024107 0.931187 0.003509
 0.045861 0.000260 0.953568 0.000311
 0.056409 0.016107 0.911300 0.016184
 0.014727 0.000260 0.981421 0.003591
 0.107652 0.009145 0.000260 0.882943
 0.056317 0.016107 0.922995 0.004581
 0.008235 0.004222 0.979308 0.008235
 0.866881 0.001776 0.131032 0.000311

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Stopped because maximum number of motifs (5) reached.
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COMMAND:	streme --p ../result/final_prediction/K562/fasta/RankLinear5.0_60/DDX20.fasta --oc ../result/final_prediction/K562/inference_raw/STREME/RankLinear5.0_60_DDX20/ --w 8 --nmotifs 5 --verbosity 1
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CPU:		c22n05.farnam.hpc.yale.internal
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FINALTIME:	1.41 seconds
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