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STREME - Sensitive, Thorough, Rapid, Enriched Motif Elicitation
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MEME version 5.3.3 (Release date: Sun Feb 7 15:39:52 2021 -0800)

For further information on how to interpret these results please access https://meme-suite.org/meme.
To get a copy of the MEME Suite software please access https://meme-suite.org.

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REFERENCE
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If you use this program in your research, please cite:

Timothy L. Bailey,
"STREME: Accurate and versatile sequence motif discovery",
bioRxiv, (preprint), Nov. 23, 2020.
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ALPHABET= ACGT

strands: + -

Background letter frequencies
A 0.35 C 0.15 G 0.15 T 0.35 

MOTIF 1-TATTAATA STREME-1
letter-probability matrix: alength= 4 w= 8 nsites= 49 P= 2.0e-003
 0.031782 0.013673 0.013673 0.940873
 0.940873 0.013673 0.013673 0.031782
 0.031782 0.013673 0.013673 0.940873
 0.031782 0.013673 0.013673 0.940873
 0.940873 0.013673 0.013673 0.031782
 0.940873 0.013673 0.013673 0.031782
 0.031782 0.013673 0.013673 0.940873
 0.940873 0.013673 0.013673 0.031782

MOTIF 2-AGTCTCAC STREME-2
letter-probability matrix: alength= 4 w= 8 nsites= 21 P= 1.2e-001
 0.940873 0.013673 0.013673 0.031782
 0.031782 0.013673 0.922764 0.031782
 0.031782 0.013673 0.013673 0.940873
 0.031782 0.922764 0.013673 0.031782
 0.031782 0.013673 0.013673 0.940873
 0.031782 0.922764 0.013673 0.031782
 0.940873 0.013673 0.013673 0.031782
 0.031782 0.922764 0.013673 0.031782

MOTIF 3-CTGTCTCC STREME-3
letter-probability matrix: alength= 4 w= 8 nsites= 24 P= 2.4e-001
 0.001326 0.970492 0.000570 0.027612
 0.053940 0.079512 0.000570 0.865978
 0.041937 0.011452 0.840142 0.106469
 0.027612 0.105968 0.026856 0.839564
 0.001326 0.944207 0.000570 0.053897
 0.106596 0.026856 0.105798 0.760750
 0.053897 0.944207 0.000570 0.001326
 0.267368 0.631326 0.000570 0.100736

MOTIF 4-CTCCATCC STREME-4
letter-probability matrix: alength= 4 w= 8 nsites= 47 P= 3.3e-001
 0.046400 0.797047 0.082400 0.074153
 0.028508 0.000589 0.027728 0.943176
 0.001369 0.942396 0.000589 0.055646
 0.001369 0.969535 0.027728 0.001369
 0.774550 0.087799 0.000589 0.137062
 0.039742 0.000589 0.255051 0.704619
 0.001369 0.996674 0.000589 0.001369
 0.001369 0.852527 0.027728 0.118377

MOTIF 5-CCAGGCRY STREME-5
letter-probability matrix: alength= 4 w= 8 nsites= 30 P= 1.0e+000
 0.001865 0.884416 0.111854 0.001865
 0.001865 0.995468 0.000802 0.001865
 0.907268 0.037780 0.053087 0.001865
 0.038843 0.037780 0.773483 0.149894
 0.001865 0.000802 0.995468 0.001865
 0.128105 0.795153 0.000802 0.075939
 0.661813 0.000802 0.335520 0.001865
 0.038843 0.445010 0.000802 0.515345

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Stopped because maximum number of motifs (5) reached.
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COMMAND:	streme --p ../result/final_prediction/K562/fasta/RankLinear5.0_60/DACH1.fasta --oc ../result/final_prediction/K562/inference_raw/STREME/RankLinear5.0_60_DACH1/ --w 8 --nmotifs 5 --verbosity 1
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CPU:		c23n03.farnam.hpc.yale.internal
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FINALTIME:	1.18 seconds
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