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STREME - Sensitive, Thorough, Rapid, Enriched Motif Elicitation
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MEME version 5.3.3 (Release date: Sun Feb 7 15:39:52 2021 -0800)

For further information on how to interpret these results please access https://meme-suite.org/meme.
To get a copy of the MEME Suite software please access https://meme-suite.org.

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REFERENCE
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If you use this program in your research, please cite:

Timothy L. Bailey,
"STREME: Accurate and versatile sequence motif discovery",
bioRxiv, (preprint), Nov. 23, 2020.
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ALPHABET= ACGT

strands: + -

Background letter frequencies
A 0.302 C 0.198 G 0.198 T 0.302 

MOTIF 1-DATYRATH STREME-1
letter-probability matrix: alength= 4 w= 8 nsites= 234 P= 1.0e-004
 0.251585 0.076333 0.244982 0.427100
 0.994462 0.000263 0.000263 0.005012
 0.000402 0.000263 0.000263 0.999072
 0.000402 0.660761 0.000263 0.338574
 0.338574 0.000263 0.660761 0.000402
 0.999072 0.000263 0.000263 0.000402
 0.005012 0.000263 0.000263 0.994462
 0.427100 0.244982 0.076333 0.251585

MOTIF 2-GCCACCTA STREME-2
letter-probability matrix: alength= 4 w= 8 nsites= 38 P= 9.5e-002
 0.036244 0.070509 0.857002 0.036244
 0.015891 0.912142 0.000992 0.070975
 0.001514 0.926519 0.035722 0.036244
 0.863742 0.133753 0.000992 0.001514
 0.001514 0.926519 0.035722 0.036244
 0.001514 0.961250 0.000992 0.036244
 0.036244 0.035722 0.139915 0.788118
 0.747096 0.035722 0.180937 0.036244

MOTIF 3-AGGAAGAG STREME-3
letter-probability matrix: alength= 4 w= 8 nsites= 96 P= 5.0e-001
 0.778058 0.049248 0.108147 0.064548
 0.012246 0.018688 0.931877 0.037189
 0.062145 0.000519 0.891063 0.046273
 0.868789 0.028590 0.101829 0.000792
 0.993276 0.000519 0.005414 0.000792
 0.000792 0.267268 0.694693 0.037247
 0.591212 0.000519 0.144426 0.263842
 0.082533 0.018688 0.764335 0.134443

MOTIF 4-GCAGAGAA STREME-4
letter-probability matrix: alength= 4 w= 8 nsites= 34 P= 8.8e-001
 0.079824 0.079364 0.744506 0.096306
 0.040699 0.917488 0.040113 0.001700
 0.957074 0.001113 0.001113 0.040699
 0.127025 0.017258 0.854017 0.001700
 0.940929 0.001113 0.017258 0.040699
 0.009159 0.001113 0.878333 0.111395
 0.917948 0.040239 0.040113 0.001700
 0.839698 0.001113 0.118489 0.040699

MOTIF 5-CCAGAGGC STREME-5
letter-probability matrix: alength= 4 w= 8 nsites= 19 P= 1.0e+000
 0.003077 0.991830 0.002016 0.003077
 0.073681 0.921226 0.002016 0.003077
 0.992891 0.002016 0.002016 0.003077
 0.073681 0.002016 0.921226 0.003077
 0.922288 0.002016 0.002016 0.073681
 0.073681 0.002016 0.921226 0.003077
 0.144511 0.002016 0.779792 0.073681
 0.144511 0.637902 0.214509 0.003077

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Stopped because maximum number of motifs (5) reached.
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COMMAND:	streme --p ../result/final_prediction/K562/fasta/RankLinear5.0_60/CUX1.fasta --oc ../result/final_prediction/K562/inference_raw/STREME/RankLinear5.0_60_CUX1/ --w 8 --nmotifs 5 --verbosity 1
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CPU:		c22n04.farnam.hpc.yale.internal
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FINALTIME:	1.61 seconds
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