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STREME - Sensitive, Thorough, Rapid, Enriched Motif Elicitation
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MEME version 5.3.3 (Release date: Sun Feb 7 15:39:52 2021 -0800)

For further information on how to interpret these results please access https://meme-suite.org/meme.
To get a copy of the MEME Suite software please access https://meme-suite.org.

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REFERENCE
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If you use this program in your research, please cite:

Timothy L. Bailey,
"STREME: Accurate and versatile sequence motif discovery",
bioRxiv, (preprint), Nov. 23, 2020.
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ALPHABET= ACGT

strands: + -

Background letter frequencies
A 0.284 C 0.216 G 0.216 T 0.284 

MOTIF 1-AGGCTGGA STREME-1
letter-probability matrix: alength= 4 w= 8 nsites= 35 P= 2.5e-002
 0.995563 0.001340 0.001340 0.001756
 0.001756 0.001340 0.995147 0.001756
 0.001756 0.001340 0.995147 0.001756
 0.001756 0.995147 0.001340 0.001756
 0.001756 0.001340 0.022805 0.974099
 0.087752 0.001340 0.779741 0.131167
 0.001756 0.001340 0.995147 0.001756
 0.804517 0.001340 0.001340 0.192803

MOTIF 2-GCCTGTAA STREME-2
letter-probability matrix: alength= 4 w= 8 nsites= 39 P= 1.7e-001
 0.129385 0.000998 0.868309 0.001308
 0.001308 0.964418 0.000998 0.033276
 0.001308 0.964418 0.000998 0.033276
 0.001308 0.000998 0.032966 0.964728
 0.129489 0.000998 0.868205 0.001308
 0.001308 0.000998 0.000998 0.996696
 0.964728 0.000998 0.000998 0.033276
 0.772406 0.000998 0.225288 0.001308

MOTIF 3-AGTAGCTG STREME-3
letter-probability matrix: alength= 4 w= 8 nsites= 28 P= 3.0e-001
 0.994900 0.001541 0.001541 0.002019
 0.002019 0.001541 0.994422 0.002019
 0.002019 0.001541 0.001541 0.994900
 0.994900 0.001541 0.001541 0.002019
 0.002019 0.001541 0.994422 0.002019
 0.002019 0.895572 0.001541 0.100869
 0.002019 0.001541 0.001541 0.994900
 0.051365 0.001541 0.945076 0.002019

MOTIF 4-TAAAAATA STREME-4
letter-probability matrix: alength= 4 w= 8 nsites= 22 P= 5.0e-001
 0.025782 0.019673 0.019673 0.934873
 0.934873 0.019673 0.019673 0.025782
 0.934873 0.019673 0.019673 0.025782
 0.934873 0.019673 0.019673 0.025782
 0.934873 0.019673 0.019673 0.025782
 0.934873 0.019673 0.019673 0.025782
 0.025782 0.019673 0.019673 0.934873
 0.934873 0.019673 0.019673 0.025782

MOTIF 5-TCACTGCA STREME-5
letter-probability matrix: alength= 4 w= 8 nsites= 24 P= 7.6e-001
 0.001737 0.001326 0.001326 0.995612
 0.086791 0.825093 0.001326 0.086791
 0.995612 0.001326 0.001326 0.001737
 0.001737 0.995200 0.001326 0.001737
 0.001737 0.086379 0.043784 0.868100
 0.001737 0.001326 0.995200 0.001737
 0.001737 0.995200 0.001326 0.001737
 0.995612 0.001326 0.001326 0.001737

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Stopped because maximum number of motifs (5) reached.
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COMMAND:	streme --p ../result/final_prediction/K562/fasta/RankLinear5.0_60/CSDE1.fasta --oc ../result/final_prediction/K562/inference_raw/STREME/RankLinear5.0_60_CSDE1/ --w 8 --nmotifs 5 --verbosity 1
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CPU:		c17n10.farnam.hpc.yale.internal
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FINALTIME:	1.54 seconds
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