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STREME - Sensitive, Thorough, Rapid, Enriched Motif Elicitation
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MEME version 5.3.3 (Release date: Sun Feb 7 15:39:52 2021 -0800)

For further information on how to interpret these results please access https://meme-suite.org/meme.
To get a copy of the MEME Suite software please access https://meme-suite.org.

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REFERENCE
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If you use this program in your research, please cite:

Timothy L. Bailey,
"STREME: Accurate and versatile sequence motif discovery",
bioRxiv, (preprint), Nov. 23, 2020.
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ALPHABET= ACGT

strands: + -

Background letter frequencies
A 0.26 C 0.24 G 0.24 T 0.26 

MOTIF 1-CAARATGG STREME-1
letter-probability matrix: alength= 4 w= 8 nsites= 86 P= 2.3e-003
 0.000556 0.818117 0.000515 0.180812
 0.961150 0.037779 0.000515 0.000556
 0.998413 0.000515 0.000515 0.000556
 0.322985 0.050450 0.619860 0.006705
 0.968658 0.000515 0.000515 0.030311
 0.000556 0.000515 0.000515 0.998413
 0.000556 0.015369 0.968665 0.015410
 0.048288 0.000515 0.942637 0.008559

MOTIF 2-GAACCAGA STREME-2
letter-probability matrix: alength= 4 w= 8 nsites= 33 P= 5.0e-001
 0.001595 0.001478 0.995331 0.001595
 0.952836 0.001478 0.001478 0.044207
 0.781976 0.001478 0.001478 0.215067
 0.001595 0.815785 0.001478 0.181141
 0.086819 0.910107 0.001478 0.001595
 0.995448 0.001478 0.001478 0.001595
 0.001595 0.001478 0.977691 0.019235
 0.995448 0.001478 0.001478 0.001595

MOTIF 3-GAGAYCAG STREME-3
letter-probability matrix: alength= 4 w= 8 nsites= 54 P= 7.6e-001
 0.000986 0.000913 0.917881 0.080220
 0.669946 0.275417 0.053651 0.000986
 0.080348 0.000913 0.887247 0.031491
 0.997187 0.000913 0.000913 0.000986
 0.196680 0.467884 0.083942 0.251494
 0.106377 0.839071 0.027240 0.027312
 0.891881 0.106220 0.000913 0.000986
 0.090948 0.027240 0.880826 0.000986

MOTIF 4-AGACATCT STREME-4
letter-probability matrix: alength= 4 w= 8 nsites= 29 P= 7.6e-001
 0.913021 0.070206 0.001197 0.015575
 0.208986 0.001197 0.788525 0.001292
 0.996314 0.001197 0.001197 0.001292
 0.093831 0.730489 0.139884 0.035796
 0.857962 0.001197 0.139549 0.001292
 0.035796 0.001197 0.208780 0.754227
 0.035796 0.869176 0.035702 0.059326
 0.001292 0.035757 0.173942 0.789009

MOTIF 5-GCCCAGTA STREME-5
letter-probability matrix: alength= 4 w= 8 nsites= 26 P= 1.0e+000
 0.075638 0.038351 0.884623 0.001388
 0.001388 0.958873 0.001286 0.038453
 0.075638 0.785097 0.075536 0.063730
 0.075638 0.772708 0.001286 0.150368
 0.996040 0.001286 0.001286 0.001388
 0.001388 0.001286 0.921689 0.075638
 0.001388 0.001286 0.001286 0.996040
 0.996040 0.001286 0.001286 0.001388

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Stopped because maximum number of motifs (5) reached.
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COMMAND:	streme --p ../result/final_prediction/K562/fasta/RankLinear5.0_60/CREB3.fasta --oc ../result/final_prediction/K562/inference_raw/STREME/RankLinear5.0_60_CREB3/ --w 8 --nmotifs 5 --verbosity 1
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CPU:		c22n07.farnam.hpc.yale.internal
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FINALTIME:	1.61 seconds
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