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STREME - Sensitive, Thorough, Rapid, Enriched Motif Elicitation
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MEME version 5.3.3 (Release date: Sun Feb 7 15:39:52 2021 -0800)

For further information on how to interpret these results please access https://meme-suite.org/meme.
To get a copy of the MEME Suite software please access https://meme-suite.org.

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REFERENCE
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If you use this program in your research, please cite:

Timothy L. Bailey,
"STREME: Accurate and versatile sequence motif discovery",
bioRxiv, (preprint), Nov. 23, 2020.
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ALPHABET= ACGT

strands: + -

Background letter frequencies
A 0.311 C 0.189 G 0.189 T 0.311 

MOTIF 1-AACAWAGT STREME-1
letter-probability matrix: alength= 4 w= 8 nsites= 18 P= 7.7e-001
 0.932235 0.063319 0.001683 0.002763
 0.993871 0.001683 0.001683 0.002763
 0.002763 0.868701 0.001683 0.126853
 0.993871 0.001683 0.001683 0.002763
 0.623238 0.063319 0.001683 0.311760
 0.932235 0.063319 0.001683 0.002763
 0.064398 0.001683 0.931156 0.002763
 0.126853 0.187409 0.063319 0.622419

MOTIF 2-CCTWTAAR STREME-2
letter-probability matrix: alength= 4 w= 8 nsites= 8 P= 1.0e+000
 0.007232 0.981129 0.004406 0.007232
 0.007232 0.981129 0.004406 0.007232
 0.007232 0.004406 0.004406 0.983955
 0.332071 0.004406 0.004406 0.659116
 0.007232 0.004406 0.004406 0.983955
 0.983955 0.004406 0.004406 0.007232
 0.983955 0.004406 0.004406 0.007232
 0.493418 0.004406 0.494943 0.007232

MOTIF 3-AGAGGAAA STREME-3
letter-probability matrix: alength= 4 w= 8 nsites= 16 P= 1.0e+000
 0.731963 0.001786 0.197936 0.068314
 0.002931 0.001786 0.992353 0.002931
 0.928114 0.067169 0.001786 0.002931
 0.002931 0.001786 0.992353 0.002931
 0.002931 0.001786 0.796202 0.199082
 0.993498 0.001786 0.001786 0.002931
 0.665710 0.001786 0.264189 0.068314
 0.993498 0.001786 0.001786 0.002931

MOTIF 4-CATCACAA STREME-4
letter-probability matrix: alength= 4 w= 8 nsites= 10 P= 1.0e+000
 0.004236 0.950140 0.002581 0.043043
 0.801593 0.191590 0.002581 0.004236
 0.004236 0.002581 0.002581 0.990602
 0.194502 0.609672 0.002581 0.193245
 0.990602 0.002581 0.002581 0.004236
 0.194502 0.798681 0.002581 0.004236
 0.896097 0.097086 0.002581 0.004236
 0.896097 0.097086 0.002581 0.004236

MOTIF 5-CATCTCCC STREME-5
letter-probability matrix: alength= 4 w= 8 nsites= 10 P= 1.0e+000
 0.004008 0.989542 0.002442 0.004008
 0.811095 0.002442 0.002442 0.184021
 0.004008 0.182455 0.002442 0.811095
 0.184021 0.720117 0.002442 0.093420
 0.093420 0.002442 0.002442 0.901696
 0.004008 0.900130 0.091854 0.004008
 0.093420 0.900130 0.002442 0.004008
 0.004008 0.989542 0.002442 0.004008

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Stopped because maximum number of motifs (5) reached.
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COMMAND:	streme --p ../result/final_prediction/K562/fasta/RankLinear5.0_60/COPS2.fasta --oc ../result/final_prediction/K562/inference_raw/STREME/RankLinear5.0_60_COPS2/ --w 8 --nmotifs 5 --verbosity 1
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CPU:		c22n07.farnam.hpc.yale.internal
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FINALTIME:	0.81 seconds
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