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STREME - Sensitive, Thorough, Rapid, Enriched Motif Elicitation
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MEME version 5.3.3 (Release date: Sun Feb 7 15:39:52 2021 -0800)

For further information on how to interpret these results please access https://meme-suite.org/meme.
To get a copy of the MEME Suite software please access https://meme-suite.org.

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REFERENCE
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If you use this program in your research, please cite:

Timothy L. Bailey,
"STREME: Accurate and versatile sequence motif discovery",
bioRxiv, (preprint), Nov. 23, 2020.
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ALPHABET= ACGT

strands: + -

Background letter frequencies
A 0.254 C 0.246 G 0.246 T 0.254 

MOTIF 1-TCAGGAGA STREME-1
letter-probability matrix: alength= 4 w= 8 nsites= 103 P= 8.2e-004
 0.000580 0.000561 0.102072 0.896787
 0.000580 0.998279 0.000561 0.000580
 0.966606 0.000561 0.032253 0.000580
 0.032272 0.094780 0.723214 0.149734
 0.016400 0.000561 0.975909 0.007129
 0.966555 0.000561 0.000561 0.032323
 0.000580 0.000561 0.998279 0.000580
 0.927927 0.007110 0.000561 0.064402

MOTIF 2-CCTCCCAA STREME-2
letter-probability matrix: alength= 4 w= 8 nsites= 104 P= 5.3e-003
 0.000540 0.998396 0.000523 0.000540
 0.000540 0.998396 0.000523 0.000540
 0.000540 0.000523 0.000523 0.998413
 0.000540 0.898353 0.050089 0.051018
 0.000540 0.998396 0.000523 0.000540
 0.000540 0.947044 0.000523 0.051892
 0.854318 0.000523 0.144619 0.000540
 0.609700 0.289806 0.055290 0.045204

MOTIF 3-GGATTACA STREME-3
letter-probability matrix: alength= 4 w= 8 nsites= 93 P= 5.3e-003
 0.000561 0.000543 0.998336 0.000561
 0.092703 0.000543 0.906193 0.000561
 0.967705 0.015892 0.015842 0.000561
 0.146514 0.143082 0.015842 0.694562
 0.000561 0.000543 0.000543 0.998354
 0.936656 0.000543 0.062240 0.000561
 0.000561 0.998336 0.000543 0.000561
 0.812761 0.000543 0.000543 0.186153

MOTIF 4-ARACCATC STREME-4
letter-probability matrix: alength= 4 w= 8 nsites= 69 P= 1.7e-001
 0.998248 0.000578 0.000578 0.000597
 0.438154 0.000578 0.560671 0.000597
 0.998248 0.000578 0.000578 0.000597
 0.000597 0.998228 0.000578 0.000597
 0.000597 0.981944 0.000578 0.016882
 0.954573 0.000578 0.044252 0.000597
 0.000597 0.000578 0.000578 0.998248
 0.148324 0.850501 0.000578 0.000597

MOTIF 5-CRTGATCC STREME-5
letter-probability matrix: alength= 4 w= 8 nsites= 92 P= 7.9e-001
 0.000497 0.998525 0.000481 0.000497
 0.437317 0.000481 0.561705 0.000497
 0.000497 0.000481 0.000481 0.998541
 0.123648 0.000481 0.875374 0.000497
 0.984987 0.000481 0.014036 0.000497
 0.068534 0.014036 0.000481 0.916950
 0.041292 0.717113 0.000481 0.241114
 0.000497 0.998525 0.000481 0.000497

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Stopped because maximum number of motifs (5) reached.
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COMMAND:	streme --p ../result/final_prediction/K562/fasta/RankLinear5.0_60/CHAMP1.fasta --oc ../result/final_prediction/K562/inference_raw/STREME/RankLinear5.0_60_CHAMP1/ --w 8 --nmotifs 5 --verbosity 1
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CPU:		c22n04.farnam.hpc.yale.internal
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FINALTIME:	1.64 seconds
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