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STREME - Sensitive, Thorough, Rapid, Enriched Motif Elicitation
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MEME version 5.3.3 (Release date: Sun Feb 7 15:39:52 2021 -0800)

For further information on how to interpret these results please access https://meme-suite.org/meme.
To get a copy of the MEME Suite software please access https://meme-suite.org.

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REFERENCE
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If you use this program in your research, please cite:

Timothy L. Bailey,
"STREME: Accurate and versatile sequence motif discovery",
bioRxiv, (preprint), Nov. 23, 2020.
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ALPHABET= ACGT

strands: + -

Background letter frequencies
A 0.292 C 0.208 G 0.208 T 0.292 

MOTIF 1-TGATGCAA STREME-1
letter-probability matrix: alength= 4 w= 8 nsites= 213 P= 2.0e-008
 0.002027 0.000195 0.002888 0.994891
 0.002027 0.000195 0.976794 0.020984
 0.948734 0.000195 0.007717 0.043354
 0.002027 0.046247 0.002053 0.949673
 0.002027 0.000195 0.990211 0.007568
 0.288600 0.616534 0.000195 0.094671
 0.992831 0.000195 0.000195 0.006779
 0.999336 0.000195 0.000195 0.000274

MOTIF 2-TTGCGCAA STREME-2
letter-probability matrix: alength= 4 w= 8 nsites= 66 P= 3.2e-004
 0.001242 0.000883 0.015614 0.982261
 0.001242 0.015614 0.015614 0.967529
 0.206471 0.000883 0.776673 0.015974
 0.067330 0.556764 0.175691 0.200215
 0.200215 0.175691 0.556764 0.067330
 0.015974 0.776673 0.000883 0.206471
 0.967529 0.015614 0.015614 0.001242
 0.982261 0.015614 0.000883 0.001242

MOTIF 3-WTTTAAAW STREME-3
letter-probability matrix: alength= 4 w= 8 nsites= 46 P= 2.5e-002
 0.417941 0.032544 0.021995 0.527519
 0.001163 0.111626 0.130090 0.757122
 0.001163 0.000826 0.000826 0.997184
 0.001163 0.000826 0.000826 0.997184
 0.997184 0.000826 0.000826 0.001163
 0.997184 0.000826 0.000826 0.001163
 0.757122 0.130090 0.111626 0.001163
 0.527519 0.021995 0.032544 0.417941

MOTIF 4-GTGACTCA STREME-4
letter-probability matrix: alength= 4 w= 8 nsites= 44 P= 4.9e-002
 0.151777 0.032624 0.792788 0.022811
 0.044632 0.022474 0.000654 0.932240
 0.022741 0.044330 0.910188 0.022741
 0.964915 0.009687 0.022474 0.002924
 0.050315 0.830737 0.111183 0.007766
 0.044702 0.066116 0.044295 0.844887
 0.088626 0.909321 0.001133 0.000920
 0.866637 0.022474 0.022474 0.088414

MOTIF 5-TACTCAGA STREME-5
letter-probability matrix: alength= 4 w= 8 nsites= 20 P= 5.0e-001
 0.002507 0.001782 0.001782 0.993930
 0.993930 0.001782 0.001782 0.002507
 0.002507 0.933748 0.061238 0.002507
 0.061964 0.001782 0.061238 0.875017
 0.002507 0.933748 0.001782 0.061964
 0.969317 0.001782 0.001782 0.027120
 0.002507 0.001782 0.993204 0.002507
 0.934473 0.001782 0.061238 0.002507

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Stopped because maximum number of motifs (5) reached.
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COMMAND:	streme --p ../result/final_prediction/K562/fasta/RankLinear5.0_60/CEBPG.fasta --oc ../result/final_prediction/K562/inference_raw/STREME/RankLinear5.0_60_CEBPG/ --w 8 --nmotifs 5 --verbosity 1
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CPU:		c22n10.farnam.hpc.yale.internal
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FINALTIME:	4.20 seconds
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