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STREME - Sensitive, Thorough, Rapid, Enriched Motif Elicitation
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MEME version 5.3.3 (Release date: Sun Feb 7 15:39:52 2021 -0800)

For further information on how to interpret these results please access https://meme-suite.org/meme.
To get a copy of the MEME Suite software please access https://meme-suite.org.

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REFERENCE
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If you use this program in your research, please cite:

Timothy L. Bailey,
"STREME: Accurate and versatile sequence motif discovery",
bioRxiv, (preprint), Nov. 23, 2020.
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ALPHABET= ACGT

strands: + -

Background letter frequencies
A 0.28 C 0.22 G 0.22 T 0.28 

MOTIF 1-TTGCGCAA STREME-1
letter-probability matrix: alength= 4 w= 8 nsites= 226 P= 6.2e-011
 0.000226 0.000177 0.000177 0.999419
 0.000226 0.000177 0.006692 0.992905
 0.133508 0.000177 0.830969 0.035345
 0.010438 0.870689 0.007674 0.111200
 0.111200 0.007674 0.870689 0.010438
 0.035345 0.830969 0.000177 0.133508
 0.992905 0.006692 0.000177 0.000226
 0.999419 0.000177 0.000177 0.000226

MOTIF 2-ATTGAGAA STREME-2
letter-probability matrix: alength= 4 w= 8 nsites= 28 P= 5.0e-001
 0.911732 0.001329 0.085246 0.001693
 0.043584 0.001329 0.001329 0.953758
 0.043584 0.001329 0.212141 0.742946
 0.001693 0.001329 0.987273 0.009705
 0.831178 0.001329 0.018671 0.148823
 0.001693 0.043220 0.953394 0.001693
 0.974461 0.001329 0.018671 0.005540
 0.911867 0.043220 0.001329 0.043584

MOTIF 3-AGGCCCAG STREME-3
letter-probability matrix: alength= 4 w= 8 nsites= 19 P= 7.6e-001
 0.904695 0.089077 0.002739 0.003489
 0.003489 0.089216 0.903806 0.003489
 0.003489 0.002739 0.990283 0.003489
 0.003489 0.990283 0.002739 0.003489
 0.003489 0.990283 0.002739 0.003489
 0.003489 0.557481 0.262588 0.176442
 0.868954 0.038480 0.089077 0.003489
 0.003489 0.002739 0.990283 0.003489

MOTIF 4-AGTCCCTC STREME-4
letter-probability matrix: alength= 4 w= 8 nsites= 23 P= 9.5e-001
 0.905519 0.001425 0.046333 0.046723
 0.001815 0.046333 0.860076 0.091776
 0.001815 0.046405 0.020015 0.931765
 0.046723 0.905129 0.001425 0.046723
 0.091776 0.829451 0.001425 0.077348
 0.136974 0.859786 0.001425 0.001815
 0.091776 0.046333 0.001425 0.860466
 0.001815 0.904985 0.091386 0.001815

MOTIF 5-CTTTCCGA STREME-5
letter-probability matrix: alength= 4 w= 8 nsites= 20 P= 1.0e+000
 0.002212 0.939088 0.001737 0.056962
 0.002212 0.001737 0.001737 0.994314
 0.002212 0.001737 0.001737 0.994314
 0.056962 0.111413 0.001737 0.829888
 0.056962 0.939088 0.001737 0.002212
 0.094299 0.768939 0.001737 0.135026
 0.056962 0.166516 0.719560 0.056962
 0.830065 0.056487 0.056487 0.056962

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Stopped because maximum number of motifs (5) reached.
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COMMAND:	streme --p ../result/final_prediction/K562/fasta/RankLinear5.0_60/CEBPB.fasta --oc ../result/final_prediction/K562/inference_raw/STREME/RankLinear5.0_60_CEBPB/ --w 8 --nmotifs 5 --verbosity 1
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CPU:		c22n08.farnam.hpc.yale.internal
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FINALTIME:	3.74 seconds
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