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STREME - Sensitive, Thorough, Rapid, Enriched Motif Elicitation
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MEME version 5.3.3 (Release date: Sun Feb 7 15:39:52 2021 -0800)

For further information on how to interpret these results please access https://meme-suite.org/meme.
To get a copy of the MEME Suite software please access https://meme-suite.org.

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REFERENCE
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If you use this program in your research, please cite:

Timothy L. Bailey,
"STREME: Accurate and versatile sequence motif discovery",
bioRxiv, (preprint), Nov. 23, 2020.
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ALPHABET= ACGT

strands: + -

Background letter frequencies
A 0.258 C 0.242 G 0.242 T 0.258 

MOTIF 1-TAAACACA STREME-1
letter-probability matrix: alength= 4 w= 8 nsites= 22 P= 2.4e-001
 0.004203 0.003958 0.003958 0.987882
 0.987882 0.003958 0.003958 0.004203
 0.987882 0.003958 0.003958 0.004203
 0.987882 0.003958 0.003958 0.004203
 0.004203 0.987637 0.003958 0.004203
 0.648138 0.003958 0.230575 0.117329
 0.004203 0.987637 0.003958 0.004203
 0.987882 0.003958 0.003958 0.004203

MOTIF 2-AGAGACAG STREME-2
letter-probability matrix: alength= 4 w= 8 nsites= 16 P= 5.0e-001
 0.917678 0.076958 0.002601 0.002762
 0.033544 0.002601 0.961093 0.002762
 0.917678 0.002601 0.076958 0.002762
 0.226552 0.002601 0.768085 0.002762
 0.843321 0.076958 0.002601 0.077119
 0.077119 0.917517 0.002601 0.002762
 0.917678 0.002601 0.002601 0.077119
 0.002762 0.002601 0.991874 0.002762

MOTIF 3-AGGGCAGG STREME-3
letter-probability matrix: alength= 4 w= 8 nsites= 12 P= 1.0e+000
 0.770500 0.002576 0.224188 0.002735
 0.002735 0.002576 0.991953 0.002735
 0.002735 0.002576 0.991953 0.002735
 0.002735 0.076209 0.844686 0.076369
 0.150239 0.844449 0.002576 0.002735
 0.961631 0.002576 0.002576 0.033217
 0.076369 0.002576 0.918320 0.002735
 0.076369 0.076209 0.844686 0.002735

MOTIF 4-CACAAATG STREME-4
letter-probability matrix: alength= 4 w= 8 nsites= 12 P= 1.0e+000
 0.023409 0.931136 0.022045 0.023409
 0.932500 0.022045 0.022045 0.023409
 0.023409 0.931136 0.022045 0.023409
 0.932500 0.022045 0.022045 0.023409
 0.932500 0.022045 0.022045 0.023409
 0.932500 0.022045 0.022045 0.023409
 0.023409 0.022045 0.022045 0.932500
 0.023409 0.022045 0.931136 0.023409

MOTIF 5-AAGGATGG STREME-5
letter-probability matrix: alength= 4 w= 8 nsites= 11 P= 1.0e+000
 0.781547 0.003622 0.003622 0.211210
 0.988911 0.003622 0.003622 0.003846
 0.003846 0.003622 0.988687 0.003846
 0.055603 0.003622 0.936930 0.003846
 0.677697 0.211320 0.003622 0.107361
 0.003846 0.003622 0.210986 0.781547
 0.003846 0.003622 0.988687 0.003846
 0.003846 0.003622 0.988687 0.003846

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Stopped because maximum number of motifs (5) reached.
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COMMAND:	streme --p ../result/final_prediction/K562/fasta/RankLinear5.0_60/CDC5L.fasta --oc ../result/final_prediction/K562/inference_raw/STREME/RankLinear5.0_60_CDC5L/ --w 8 --nmotifs 5 --verbosity 1
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CPU:		c22n12.farnam.hpc.yale.internal
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FINALTIME:	1.27 seconds
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