********************************************************************************
STREME - Sensitive, Thorough, Rapid, Enriched Motif Elicitation
********************************************************************************
MEME version 5.3.3 (Release date: Sun Feb 7 15:39:52 2021 -0800)

For further information on how to interpret these results please access https://meme-suite.org/meme.
To get a copy of the MEME Suite software please access https://meme-suite.org.

********************************************************************************


********************************************************************************
REFERENCE
********************************************************************************
If you use this program in your research, please cite:

Timothy L. Bailey,
"STREME: Accurate and versatile sequence motif discovery",
bioRxiv, (preprint), Nov. 23, 2020.
********************************************************************************


ALPHABET= ACGT

strands: + -

Background letter frequencies
A 0.239 C 0.261 G 0.261 T 0.239 

MOTIF 1-GAAGACWA STREME-1
letter-probability matrix: alength= 4 w= 8 nsites= 35 P= 5.0e-001
 0.001036 0.181787 0.803703 0.013473
 0.786243 0.151500 0.001131 0.061125
 0.906567 0.091266 0.001131 0.001036
 0.061222 0.001131 0.876521 0.061125
 0.966657 0.031176 0.001131 0.001036
 0.001036 0.765801 0.001131 0.232031
 0.422146 0.091556 0.201985 0.284312
 0.906277 0.001131 0.001131 0.091461

MOTIF 2-AAGGTAGA STREME-2
letter-probability matrix: alength= 4 w= 8 nsites= 18 P= 7.6e-001
 0.991967 0.002755 0.002755 0.002523
 0.918798 0.002755 0.075924 0.002523
 0.002523 0.002755 0.919030 0.075692
 0.075692 0.033045 0.888741 0.002523
 0.125589 0.002755 0.002755 0.868901
 0.918798 0.002755 0.075924 0.002523
 0.032812 0.075924 0.888741 0.002523
 0.625180 0.222969 0.149328 0.002523

MOTIF 3-CTGTAATC STREME-3
letter-probability matrix: alength= 4 w= 8 nsites= 22 P= 8.8e-001
 0.002425 0.922156 0.002649 0.072770
 0.072770 0.002649 0.002649 0.921933
 0.002425 0.002649 0.922156 0.072770
 0.002425 0.002649 0.002649 0.992277
 0.921933 0.002649 0.002649 0.072770
 0.921933 0.002649 0.072993 0.002425
 0.002425 0.002649 0.002649 0.992277
 0.143340 0.851585 0.002649 0.002425

MOTIF 4-CTCTACCT STREME-4
letter-probability matrix: alength= 4 w= 8 nsites= 17 P= 1.0e+000
 0.001630 0.947690 0.001780 0.048900
 0.048977 0.001780 0.190862 0.758381
 0.143594 0.758455 0.096321 0.001630
 0.048900 0.112579 0.001780 0.836740
 0.916409 0.001780 0.001780 0.080031
 0.001630 0.947690 0.001780 0.048900
 0.001630 0.805726 0.001780 0.190864
 0.048900 0.049051 0.049051 0.852998

MOTIF 5-CTCGGYCY STREME-5
letter-probability matrix: alength= 4 w= 8 nsites= 21 P= 1.0e+000
 0.001787 0.994476 0.001951 0.001787
 0.001787 0.209294 0.001951 0.786968
 0.059887 0.936376 0.001951 0.001787
 0.001787 0.053849 0.942577 0.001787
 0.001787 0.001951 0.890762 0.105500
 0.001787 0.579539 0.105748 0.312927
 0.001787 0.994476 0.001951 0.001787
 0.001787 0.417642 0.001951 0.578620

********************************************************************************
Stopped because maximum number of motifs (5) reached.
********************************************************************************
COMMAND:	streme --p ../result/final_prediction/K562/fasta/RankLinear5.0_60/CCAR2.fasta --oc ../result/final_prediction/K562/inference_raw/STREME/RankLinear5.0_60_CCAR2/ --w 8 --nmotifs 5 --verbosity 1
********************************************************************************
CPU:		c22n11.farnam.hpc.yale.internal
********************************************************************************
FINALTIME:	1.55 seconds
********************************************************************************