********************************************************************************
STREME - Sensitive, Thorough, Rapid, Enriched Motif Elicitation
********************************************************************************
MEME version 5.3.3 (Release date: Sun Feb 7 15:39:52 2021 -0800)

For further information on how to interpret these results please access https://meme-suite.org/meme.
To get a copy of the MEME Suite software please access https://meme-suite.org.

********************************************************************************


********************************************************************************
REFERENCE
********************************************************************************
If you use this program in your research, please cite:

Timothy L. Bailey,
"STREME: Accurate and versatile sequence motif discovery",
bioRxiv, (preprint), Nov. 23, 2020.
********************************************************************************


ALPHABET= ACGT

strands: + -

Background letter frequencies
A 0.239 C 0.261 G 0.261 T 0.239 

MOTIF 1-CCAATCAG STREME-1
letter-probability matrix: alength= 4 w= 8 nsites= 41 P= 5.5e-002
 0.001221 0.996225 0.001333 0.001221
 0.001221 0.960758 0.001333 0.036688
 0.996112 0.001333 0.001333 0.001221
 0.996112 0.001333 0.001333 0.001221
 0.001221 0.001333 0.001333 0.996112
 0.001221 0.905438 0.072267 0.021074
 0.960645 0.001333 0.036800 0.001221
 0.001221 0.178617 0.812168 0.007994

MOTIF 2-GAGDHCTC STREME-2
letter-probability matrix: alength= 4 w= 8 nsites= 79 P= 2.1e-001
 0.000568 0.000620 0.813315 0.185498
 0.807650 0.191163 0.000620 0.000568
 0.000568 0.122873 0.851221 0.025338
 0.345087 0.000620 0.247423 0.406871
 0.406871 0.247423 0.000620 0.345087
 0.025338 0.851221 0.122873 0.000568
 0.000568 0.000620 0.191163 0.807650
 0.185498 0.813315 0.000620 0.000568

MOTIF 3-ATCACRAG STREME-3
letter-probability matrix: alength= 4 w= 8 nsites= 32 P= 2.4e-001
 0.982562 0.015036 0.001254 0.001148
 0.001148 0.101243 0.101243 0.796367
 0.001148 0.896461 0.101243 0.001148
 0.963051 0.001254 0.034548 0.001148
 0.001148 0.963156 0.001254 0.034442
 0.470624 0.001254 0.526975 0.001148
 0.963051 0.001254 0.034548 0.001148
 0.001148 0.001254 0.996450 0.001148

MOTIF 4-CCACCAGA STREME-4
letter-probability matrix: alength= 4 w= 8 nsites= 34 P= 9.5e-001
 0.029579 0.911081 0.058354 0.000986
 0.000986 0.882304 0.115724 0.000986
 0.853389 0.001077 0.144548 0.000986
 0.087041 0.882304 0.001077 0.029579
 0.049077 0.776935 0.029669 0.144318
 0.939583 0.001077 0.058354 0.000986
 0.000986 0.086947 0.882489 0.029579
 0.996861 0.001077 0.001077 0.000986

MOTIF 5-TAGACACA STREME-5
letter-probability matrix: alength= 4 w= 8 nsites= 15 P= 1.0e+000
 0.002411 0.002633 0.002633 0.992323
 0.922400 0.072556 0.002633 0.002411
 0.002411 0.002633 0.992545 0.002411
 0.992323 0.002633 0.002633 0.002411
 0.002411 0.992545 0.002633 0.002411
 0.992323 0.002633 0.002633 0.002411
 0.002411 0.992545 0.002633 0.002411
 0.781876 0.002633 0.213080 0.002411

********************************************************************************
Stopped because maximum number of motifs (5) reached.
********************************************************************************
COMMAND:	streme --p ../result/final_prediction/K562/fasta/RankLinear5.0_60/CC2D1A.fasta --oc ../result/final_prediction/K562/inference_raw/STREME/RankLinear5.0_60_CC2D1A/ --w 8 --nmotifs 5 --verbosity 1
********************************************************************************
CPU:		c22n06.farnam.hpc.yale.internal
********************************************************************************
FINALTIME:	1.63 seconds
********************************************************************************