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STREME - Sensitive, Thorough, Rapid, Enriched Motif Elicitation
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MEME version 5.3.3 (Release date: Sun Feb 7 15:39:52 2021 -0800)

For further information on how to interpret these results please access https://meme-suite.org/meme.
To get a copy of the MEME Suite software please access https://meme-suite.org.

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REFERENCE
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If you use this program in your research, please cite:

Timothy L. Bailey,
"STREME: Accurate and versatile sequence motif discovery",
bioRxiv, (preprint), Nov. 23, 2020.
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ALPHABET= ACGT

strands: + -

Background letter frequencies
A 0.306 C 0.194 G 0.194 T 0.306 

MOTIF 1-AACGAAAW STREME-1
letter-probability matrix: alength= 4 w= 8 nsites= 109 P= 3.1e-002
 0.998684 0.000368 0.000368 0.000581
 0.998684 0.000368 0.000368 0.000581
 0.000581 0.976665 0.000368 0.022387
 0.000581 0.049359 0.949480 0.000581
 0.919650 0.000368 0.079402 0.000581
 0.873059 0.007452 0.066275 0.053214
 0.694445 0.040933 0.002882 0.261740
 0.330242 0.045409 0.141025 0.483324

MOTIF 2-CACGCCTG STREME-2
letter-probability matrix: alength= 4 w= 8 nsites= 28 P= 5.0e-001
 0.177554 0.775394 0.045113 0.001939
 0.819992 0.088999 0.045184 0.045825
 0.001939 0.835700 0.019394 0.142967
 0.001939 0.001227 0.906982 0.089852
 0.045825 0.907123 0.045113 0.001939
 0.089711 0.775465 0.045113 0.089711
 0.089711 0.001227 0.176772 0.732290
 0.133597 0.001227 0.819351 0.045825

MOTIF 3-CCTTTGCA STREME-3
letter-probability matrix: alength= 4 w= 8 nsites= 13 P= 7.6e-001
 0.003117 0.991794 0.001973 0.003117
 0.003117 0.921239 0.072528 0.003117
 0.144454 0.072528 0.001973 0.781045
 0.073672 0.001973 0.001973 0.922383
 0.144454 0.001973 0.143310 0.710263
 0.003117 0.001973 0.991794 0.003117
 0.003117 0.991794 0.001973 0.003117
 0.709349 0.001973 0.001973 0.286705

MOTIF 4-ATTTTAAA STREME-4
letter-probability matrix: alength= 4 w= 8 nsites= 16 P= 1.0e+000
 0.936927 0.017618 0.017618 0.027836
 0.027836 0.017618 0.017618 0.936927
 0.027836 0.017618 0.017618 0.936927
 0.027836 0.017618 0.017618 0.936927
 0.027836 0.017618 0.017618 0.936927
 0.936927 0.017618 0.017618 0.027836
 0.936927 0.017618 0.017618 0.027836
 0.936927 0.017618 0.017618 0.027836

MOTIF 5-GGGCACTT STREME-5
letter-probability matrix: alength= 4 w= 8 nsites= 14 P= 1.0e+000
 0.027836 0.017618 0.926709 0.027836
 0.027836 0.017618 0.926709 0.027836
 0.027836 0.017618 0.926709 0.027836
 0.027836 0.926709 0.017618 0.027836
 0.936927 0.017618 0.017618 0.027836
 0.027836 0.926709 0.017618 0.027836
 0.027836 0.017618 0.017618 0.936927
 0.027836 0.017618 0.017618 0.936927

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Stopped because maximum number of motifs (5) reached.
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COMMAND:	streme --p ../result/final_prediction/K562/fasta/RankLinear5.0_60/CBX8.fasta --oc ../result/final_prediction/K562/inference_raw/STREME/RankLinear5.0_60_CBX8/ --w 8 --nmotifs 5 --verbosity 1
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CPU:		c23n02.farnam.hpc.yale.internal
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FINALTIME:	1.64 seconds
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