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STREME - Sensitive, Thorough, Rapid, Enriched Motif Elicitation
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MEME version 5.3.3 (Release date: Sun Feb 7 15:39:52 2021 -0800)

For further information on how to interpret these results please access https://meme-suite.org/meme.
To get a copy of the MEME Suite software please access https://meme-suite.org.

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REFERENCE
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If you use this program in your research, please cite:

Timothy L. Bailey,
"STREME: Accurate and versatile sequence motif discovery",
bioRxiv, (preprint), Nov. 23, 2020.
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ALPHABET= ACGT

strands: + -

Background letter frequencies
A 0.266 C 0.234 G 0.234 T 0.266 

MOTIF 1-GCAGCACC STREME-1
letter-probability matrix: alength= 4 w= 8 nsites= 47 P= 1.1e-002
 0.118367 0.000988 0.879523 0.001121
 0.001121 0.967529 0.000988 0.030362
 0.879845 0.000988 0.118045 0.001121
 0.118179 0.088804 0.746719 0.046298
 0.001121 0.967529 0.000988 0.030362
 0.996903 0.000988 0.000988 0.001121
 0.033909 0.963982 0.000988 0.001121
 0.001121 0.996769 0.000988 0.001121

MOTIF 2-CATTTCYC STREME-2
letter-probability matrix: alength= 4 w= 8 nsites= 56 P= 1.1e-002
 0.033131 0.751271 0.166450 0.049148
 0.996974 0.000965 0.000965 0.001096
 0.033131 0.000965 0.000965 0.964939
 0.058327 0.000965 0.000965 0.939743
 0.001096 0.000965 0.086950 0.910989
 0.001096 0.996844 0.000965 0.001096
 0.058327 0.409356 0.000965 0.531352
 0.001096 0.996844 0.000965 0.001096

MOTIF 3-ATGAGGGC STREME-3
letter-probability matrix: alength= 4 w= 8 nsites= 37 P= 2.4e-001
 0.872914 0.000946 0.113476 0.012663
 0.001074 0.012536 0.000946 0.985445
 0.085471 0.000946 0.884467 0.029116
 0.968993 0.000946 0.000946 0.029116
 0.001074 0.000946 0.968910 0.029071
 0.001074 0.000946 0.940823 0.057157
 0.029071 0.000946 0.968910 0.001074
 0.001074 0.996907 0.000946 0.001074

MOTIF 4-GCCTGGAC STREME-4
letter-probability matrix: alength= 4 w= 8 nsites= 29 P= 7.6e-001
 0.001633 0.001439 0.995295 0.001633
 0.086941 0.909987 0.001439 0.001633
 0.001633 0.952709 0.001439 0.044219
 0.001633 0.001439 0.001439 0.995489
 0.086941 0.001439 0.909987 0.001633
 0.001633 0.001439 0.995295 0.001633
 0.995489 0.001439 0.001439 0.001633
 0.001633 0.995295 0.001439 0.001633

MOTIF 5-AGAAGGCT STREME-5
letter-probability matrix: alength= 4 w= 8 nsites= 26 P= 1.0e+000
 0.933255 0.021291 0.021291 0.024164
 0.024164 0.021291 0.930382 0.024164
 0.933255 0.021291 0.021291 0.024164
 0.933255 0.021291 0.021291 0.024164
 0.024164 0.021291 0.930382 0.024164
 0.024164 0.021291 0.930382 0.024164
 0.024164 0.930382 0.021291 0.024164
 0.024164 0.021291 0.021291 0.933255

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Stopped because maximum number of motifs (5) reached.
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COMMAND:	streme --p ../result/final_prediction/K562/fasta/RankLinear5.0_60/CBX5.fasta --oc ../result/final_prediction/K562/inference_raw/STREME/RankLinear5.0_60_CBX5/ --w 8 --nmotifs 5 --verbosity 1
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CPU:		c22n12.farnam.hpc.yale.internal
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FINALTIME:	1.65 seconds
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