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STREME - Sensitive, Thorough, Rapid, Enriched Motif Elicitation
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MEME version 5.3.3 (Release date: Sun Feb 7 15:39:52 2021 -0800)

For further information on how to interpret these results please access https://meme-suite.org/meme.
To get a copy of the MEME Suite software please access https://meme-suite.org.

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REFERENCE
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If you use this program in your research, please cite:

Timothy L. Bailey,
"STREME: Accurate and versatile sequence motif discovery",
bioRxiv, (preprint), Nov. 23, 2020.
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ALPHABET= ACGT

strands: + -

Background letter frequencies
A 0.294 C 0.206 G 0.206 T 0.294 

MOTIF 1-GTTTAACA STREME-1
letter-probability matrix: alength= 4 w= 8 nsites= 41 P= 1.2e-001
 0.114085 0.000834 0.883889 0.001192
 0.285368 0.113364 0.000834 0.600435
 0.001192 0.000834 0.141769 0.856205
 0.001192 0.091092 0.000834 0.906882
 0.997140 0.000834 0.000834 0.001192
 0.856159 0.000834 0.000834 0.142172
 0.001192 0.996782 0.000834 0.001192
 0.997140 0.000834 0.000834 0.001192

MOTIF 2-CAAKGGAR STREME-2
letter-probability matrix: alength= 4 w= 8 nsites= 59 P= 3.3e-001
 0.000884 0.976791 0.000619 0.021707
 0.997879 0.000619 0.000619 0.000884
 0.977056 0.000619 0.000619 0.021707
 0.000884 0.000619 0.659573 0.338925
 0.138995 0.004601 0.832171 0.024233
 0.000884 0.000619 0.997614 0.000884
 0.956232 0.000619 0.021442 0.021707
 0.416465 0.009239 0.552589 0.021707

MOTIF 3-AAGTCAGC STREME-3
letter-probability matrix: alength= 4 w= 8 nsites= 46 P= 5.0e-001
 0.920160 0.000832 0.021829 0.057180
 0.969153 0.000832 0.028828 0.001188
 0.227712 0.009149 0.757793 0.005346
 0.029184 0.000832 0.000832 0.969153
 0.001188 0.949705 0.000832 0.048276
 0.928118 0.000832 0.028828 0.042223
 0.048276 0.000832 0.881792 0.069101
 0.066809 0.838435 0.061129 0.033628

MOTIF 4-GAAACMAT STREME-4
letter-probability matrix: alength= 4 w= 8 nsites= 33 P= 5.0e-001
 0.033036 0.014061 0.951558 0.001345
 0.951961 0.032633 0.014061 0.001345
 0.933389 0.032633 0.032633 0.001345
 0.983653 0.000941 0.000941 0.014464
 0.001345 0.991154 0.000941 0.006560
 0.322934 0.459519 0.032633 0.184914
 0.990711 0.000941 0.000941 0.007406
 0.033036 0.014061 0.077820 0.875083

MOTIF 5-AGGAGGCG STREME-5
letter-probability matrix: alength= 4 w= 8 nsites= 23 P= 9.1e-001
 0.955507 0.001200 0.001200 0.042094
 0.042094 0.122341 0.833851 0.001713
 0.082604 0.017916 0.817005 0.082475
 0.713094 0.001200 0.162852 0.122855
 0.001713 0.001200 0.914613 0.082475
 0.001713 0.081961 0.833851 0.082475
 0.042094 0.752373 0.082091 0.123442
 0.069631 0.021390 0.785994 0.122985

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Stopped because maximum number of motifs (5) reached.
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COMMAND:	streme --p ../result/final_prediction/K562/fasta/RankLinear5.0_60/CBX3.fasta --oc ../result/final_prediction/K562/inference_raw/STREME/RankLinear5.0_60_CBX3/ --w 8 --nmotifs 5 --verbosity 1
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CPU:		c17n09.farnam.hpc.yale.internal
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FINALTIME:	5.60 seconds
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