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STREME - Sensitive, Thorough, Rapid, Enriched Motif Elicitation
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MEME version 5.3.3 (Release date: Sun Feb 7 15:39:52 2021 -0800)

For further information on how to interpret these results please access https://meme-suite.org/meme.
To get a copy of the MEME Suite software please access https://meme-suite.org.

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REFERENCE
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If you use this program in your research, please cite:

Timothy L. Bailey,
"STREME: Accurate and versatile sequence motif discovery",
bioRxiv, (preprint), Nov. 23, 2020.
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ALPHABET= ACGT

strands: + -

Background letter frequencies
A 0.236 C 0.264 G 0.264 T 0.236 

MOTIF 1-AAATGGGK STREME-1
letter-probability matrix: alength= 4 w= 8 nsites= 85 P= 4.1e-003
 0.909904 0.089003 0.000576 0.000517
 0.983187 0.000576 0.000576 0.015662
 0.972237 0.000576 0.026671 0.000517
 0.000517 0.000576 0.000576 0.998332
 0.000517 0.015721 0.983246 0.000517
 0.000517 0.000576 0.906784 0.092123
 0.000517 0.000576 0.998391 0.000517
 0.156716 0.125792 0.459490 0.258002

MOTIF 2-ACTGAGGC STREME-2
letter-probability matrix: alength= 4 w= 8 nsites= 88 P= 2.4e-002
 0.998239 0.000608 0.000608 0.000545
 0.000545 0.877475 0.121435 0.000545
 0.000545 0.167961 0.032579 0.798915
 0.007163 0.016619 0.975673 0.000545
 0.998239 0.000608 0.000608 0.000545
 0.000545 0.000608 0.998301 0.000545
 0.139720 0.048667 0.746816 0.064797
 0.000545 0.870312 0.016593 0.112549

MOTIF 3-GGGCTCCA STREME-3
letter-probability matrix: alength= 4 w= 8 nsites= 27 P= 2.4e-001
 0.001894 0.057631 0.938580 0.001894
 0.001894 0.169208 0.827003 0.001894
 0.001894 0.002111 0.994101 0.001894
 0.001894 0.994101 0.002111 0.001894
 0.001894 0.002111 0.180525 0.815470
 0.057415 0.938580 0.002111 0.001894
 0.001894 0.994101 0.002111 0.001894
 0.826787 0.002111 0.169208 0.001894

MOTIF 4-CATCTGTA STREME-4
letter-probability matrix: alength= 4 w= 8 nsites= 68 P= 5.0e-001
 0.000551 0.803976 0.000614 0.194859
 0.784733 0.000614 0.214103 0.000551
 0.081325 0.000614 0.000614 0.917447
 0.000551 0.982140 0.000614 0.016695
 0.000551 0.113781 0.032903 0.852765
 0.217425 0.032903 0.700662 0.049010
 0.000551 0.057846 0.000614 0.940990
 0.686333 0.000614 0.312502 0.000551

MOTIF 5-RGTCACAC STREME-5
letter-probability matrix: alength= 4 w= 8 nsites= 34 P= 5.0e-001
 0.392083 0.001475 0.527244 0.079198
 0.001324 0.001475 0.995876 0.001324
 0.001324 0.001475 0.001475 0.995725
 0.001324 0.745727 0.251625 0.001324
 0.917977 0.079224 0.001475 0.001324
 0.001324 0.995876 0.001475 0.001324
 0.995725 0.001475 0.001475 0.001324
 0.001324 0.995876 0.001475 0.001324

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Stopped because maximum number of motifs (5) reached.
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COMMAND:	streme --p ../result/final_prediction/K562/fasta/RankLinear5.0_60/CBX1.fasta --oc ../result/final_prediction/K562/inference_raw/STREME/RankLinear5.0_60_CBX1/ --w 8 --nmotifs 5 --verbosity 1
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CPU:		c22n05.farnam.hpc.yale.internal
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FINALTIME:	3.34 seconds
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