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STREME - Sensitive, Thorough, Rapid, Enriched Motif Elicitation
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MEME version 5.3.3 (Release date: Sun Feb 7 15:39:52 2021 -0800)

For further information on how to interpret these results please access https://meme-suite.org/meme.
To get a copy of the MEME Suite software please access https://meme-suite.org.

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REFERENCE
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If you use this program in your research, please cite:

Timothy L. Bailey,
"STREME: Accurate and versatile sequence motif discovery",
bioRxiv, (preprint), Nov. 23, 2020.
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ALPHABET= ACGT

strands: + -

Background letter frequencies
A 0.27 C 0.23 G 0.23 T 0.27 

MOTIF 1-ASTCAGCA STREME-1
letter-probability matrix: alength= 4 w= 8 nsites= 230 P= 1.8e-007
 0.923408 0.006340 0.032311 0.037941
 0.094586 0.347849 0.466467 0.091098
 0.000239 0.000203 0.000203 0.999354
 0.000239 0.999318 0.000203 0.000239
 0.999354 0.000203 0.000203 0.000239
 0.020102 0.012517 0.836106 0.131275
 0.000239 0.999318 0.000203 0.000239
 0.942283 0.000203 0.015711 0.041803

MOTIF 2-GGAGAYAG STREME-2
letter-probability matrix: alength= 4 w= 8 nsites= 37 P= 2.4e-001
 0.001126 0.000958 0.996790 0.001126
 0.058992 0.000958 0.910038 0.030013
 0.881319 0.087710 0.000958 0.030013
 0.001126 0.223235 0.774513 0.001126
 0.948373 0.000958 0.049543 0.001126
 0.001126 0.368888 0.000958 0.629028
 0.823267 0.145763 0.029844 0.001126
 0.146119 0.000958 0.793931 0.058992

MOTIF 3-CTCCCACC STREME-3
letter-probability matrix: alength= 4 w= 8 nsites= 40 P= 3.0e-001
 0.001107 0.996845 0.000941 0.001107
 0.001107 0.092184 0.183056 0.723654
 0.029500 0.968452 0.000941 0.001107
 0.287633 0.710318 0.000941 0.001107
 0.086378 0.859672 0.029335 0.024615
 0.968617 0.000941 0.029335 0.001107
 0.001107 0.996845 0.000941 0.001107
 0.143624 0.626071 0.114515 0.115789

MOTIF 4-CCAATCAT STREME-4
letter-probability matrix: alength= 4 w= 8 nsites= 24 P= 5.0e-001
 0.050448 0.897495 0.001610 0.050448
 0.001893 0.994605 0.001610 0.001893
 0.877522 0.098876 0.001610 0.021993
 0.828967 0.098876 0.050165 0.021993
 0.001893 0.050165 0.050165 0.897778
 0.050448 0.946050 0.001610 0.001893
 0.946333 0.001610 0.001610 0.050448
 0.099159 0.021710 0.198046 0.681086

MOTIF 5-TAAAGAAA STREME-5
letter-probability matrix: alength= 4 w= 8 nsites= 24 P= 7.6e-001
 0.001805 0.001535 0.001535 0.995124
 0.948815 0.001535 0.001535 0.048115
 0.948740 0.001535 0.001535 0.048189
 0.836352 0.001535 0.141137 0.020976
 0.001805 0.001535 0.882516 0.114144
 0.895154 0.001535 0.055196 0.048115
 0.883186 0.020706 0.001535 0.094573
 0.883130 0.047845 0.053462 0.015563

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Stopped because maximum number of motifs (5) reached.
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COMMAND:	streme --p ../result/final_prediction/K562/fasta/RankLinear5.0_60/C11orf30.fasta --oc ../result/final_prediction/K562/inference_raw/STREME/RankLinear5.0_60_C11orf30/ --w 8 --nmotifs 5 --verbosity 1
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CPU:		c17n09.farnam.hpc.yale.internal
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FINALTIME:	1.59 seconds
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