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STREME - Sensitive, Thorough, Rapid, Enriched Motif Elicitation
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MEME version 5.3.3 (Release date: Sun Feb 7 15:39:52 2021 -0800)

For further information on how to interpret these results please access https://meme-suite.org/meme.
To get a copy of the MEME Suite software please access https://meme-suite.org.

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REFERENCE
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If you use this program in your research, please cite:

Timothy L. Bailey,
"STREME: Accurate and versatile sequence motif discovery",
bioRxiv, (preprint), Nov. 23, 2020.
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ALPHABET= ACGT

strands: + -

Background letter frequencies
A 0.284 C 0.216 G 0.216 T 0.284 

MOTIF 1-CTTTGAAA STREME-1
letter-probability matrix: alength= 4 w= 8 nsites= 27 P= 2.4e-001
 0.001551 0.805406 0.191492 0.001551
 0.039369 0.064785 0.038995 0.856851
 0.077309 0.001177 0.001177 0.920337
 0.001551 0.001177 0.001177 0.996095
 0.001551 0.001177 0.995721 0.001551
 0.793201 0.128313 0.001177 0.077309
 0.960063 0.016832 0.021554 0.001551
 0.913104 0.001177 0.008410 0.077309

MOTIF 2-GCAAACAC STREME-2
letter-probability matrix: alength= 4 w= 8 nsites= 27 P= 5.0e-001
 0.001850 0.001403 0.994897 0.001850
 0.001850 0.994897 0.001403 0.001850
 0.950247 0.001403 0.001403 0.046946
 0.950247 0.001403 0.001403 0.046946
 0.862039 0.091741 0.025702 0.020518
 0.001850 0.768542 0.046500 0.183109
 0.859910 0.046500 0.001403 0.092187
 0.274623 0.677028 0.001403 0.046946

MOTIF 3-AGCCTTGA STREME-3
letter-probability matrix: alength= 4 w= 8 nsites= 19 P= 7.6e-001
 0.868667 0.001940 0.001940 0.127452
 0.127452 0.001940 0.805703 0.064905
 0.002557 0.841702 0.001940 0.153801
 0.002557 0.992945 0.001940 0.002557
 0.002557 0.001940 0.064288 0.931215
 0.028367 0.064288 0.001940 0.905405
 0.002557 0.001940 0.992945 0.002557
 0.993562 0.001940 0.001940 0.002557

MOTIF 4-AGRTAYCT STREME-4
letter-probability matrix: alength= 4 w= 8 nsites= 40 P= 9.5e-001
 0.804611 0.048533 0.034687 0.112169
 0.048998 0.024960 0.900617 0.025425
 0.380747 0.001462 0.521646 0.096145
 0.001928 0.001462 0.001462 0.995148
 0.995148 0.001462 0.001462 0.001928
 0.096145 0.521646 0.001462 0.380747
 0.025425 0.900617 0.024960 0.048998
 0.112169 0.034687 0.048533 0.804611

MOTIF 5-GGATGATC STREME-5
letter-probability matrix: alength= 4 w= 8 nsites= 19 P= 1.0e+000
 0.001862 0.001413 0.976064 0.020660
 0.092826 0.001413 0.812935 0.092826
 0.858646 0.001413 0.138078 0.001862
 0.047344 0.001413 0.183928 0.767314
 0.001862 0.001413 0.994862 0.001862
 0.976514 0.001413 0.001413 0.020660
 0.047271 0.001413 0.046822 0.904494
 0.047271 0.813081 0.046822 0.092826

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Stopped because maximum number of motifs (5) reached.
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COMMAND:	streme --p ../result/final_prediction/K562/fasta/RankLinear5.0_60/BRF2.fasta --oc ../result/final_prediction/K562/inference_raw/STREME/RankLinear5.0_60_BRF2/ --w 8 --nmotifs 5 --verbosity 1
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CPU:		c23n02.farnam.hpc.yale.internal
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FINALTIME:	1.69 seconds
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