********************************************************************************
STREME - Sensitive, Thorough, Rapid, Enriched Motif Elicitation
********************************************************************************
MEME version 5.3.3 (Release date: Sun Feb 7 15:39:52 2021 -0800)

For further information on how to interpret these results please access https://meme-suite.org/meme.
To get a copy of the MEME Suite software please access https://meme-suite.org.

********************************************************************************


********************************************************************************
REFERENCE
********************************************************************************
If you use this program in your research, please cite:

Timothy L. Bailey,
"STREME: Accurate and versatile sequence motif discovery",
bioRxiv, (preprint), Nov. 23, 2020.
********************************************************************************


ALPHABET= ACGT

strands: + -

Background letter frequencies
A 0.245 C 0.255 G 0.255 T 0.245 

MOTIF 1-CTGAGCTA STREME-1
letter-probability matrix: alength= 4 w= 8 nsites= 27 P= 2.4e-001
 0.022318 0.932227 0.023136 0.022318
 0.022318 0.023136 0.023136 0.931409
 0.022318 0.023136 0.932227 0.022318
 0.931409 0.023136 0.023136 0.022318
 0.022318 0.023136 0.932227 0.022318
 0.022318 0.932227 0.023136 0.022318
 0.022318 0.023136 0.023136 0.931409
 0.931409 0.023136 0.023136 0.022318

MOTIF 2-CTCTACCA STREME-2
letter-probability matrix: alength= 4 w= 8 nsites= 26 P= 5.0e-001
 0.022318 0.932227 0.023136 0.022318
 0.022318 0.023136 0.023136 0.931409
 0.022318 0.932227 0.023136 0.022318
 0.022318 0.023136 0.023136 0.931409
 0.931409 0.023136 0.023136 0.022318
 0.022318 0.932227 0.023136 0.022318
 0.022318 0.932227 0.023136 0.022318
 0.931409 0.023136 0.023136 0.022318

MOTIF 3-AACCACTA STREME-3
letter-probability matrix: alength= 4 w= 8 nsites= 46 P= 6.8e-001
 0.683975 0.110046 0.012182 0.193797
 0.877213 0.028108 0.028108 0.066571
 0.028073 0.969971 0.000995 0.000960
 0.000960 0.942859 0.028108 0.028073
 0.711489 0.220945 0.055420 0.012147
 0.000960 0.860722 0.000995 0.137323
 0.000960 0.137765 0.000995 0.860279
 0.887392 0.110653 0.000995 0.000960

MOTIF 4-AGGCGCTG STREME-4
letter-probability matrix: alength= 4 w= 8 nsites= 27 P= 7.6e-001
 0.918544 0.078680 0.001413 0.001363
 0.001363 0.157094 0.824298 0.017245
 0.039855 0.001413 0.957368 0.001363
 0.001363 0.957368 0.001413 0.039855
 0.001363 0.001413 0.995860 0.001363
 0.078630 0.762914 0.001413 0.157044
 0.039855 0.001413 0.040046 0.918685
 0.001363 0.039905 0.832626 0.126106

MOTIF 5-GATCKTAB STREME-5
letter-probability matrix: alength= 4 w= 8 nsites= 16 P= 1.0e+000
 0.002603 0.002698 0.992097 0.002603
 0.961682 0.033018 0.002698 0.002603
 0.002603 0.002698 0.002698 0.992001
 0.002603 0.992097 0.002698 0.002603
 0.002603 0.076182 0.445769 0.475446
 0.150111 0.002698 0.002698 0.844493
 0.992001 0.002698 0.002698 0.002603
 0.150111 0.401517 0.223690 0.224682

********************************************************************************
Stopped because maximum number of motifs (5) reached.
********************************************************************************
COMMAND:	streme --p ../result/final_prediction/K562/fasta/RankLinear5.0_60/BRF1.fasta --oc ../result/final_prediction/K562/inference_raw/STREME/RankLinear5.0_60_BRF1/ --w 8 --nmotifs 5 --verbosity 1
********************************************************************************
CPU:		c22n06.farnam.hpc.yale.internal
********************************************************************************
FINALTIME:	0.97 seconds
********************************************************************************