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STREME - Sensitive, Thorough, Rapid, Enriched Motif Elicitation
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MEME version 5.3.3 (Release date: Sun Feb 7 15:39:52 2021 -0800)

For further information on how to interpret these results please access https://meme-suite.org/meme.
To get a copy of the MEME Suite software please access https://meme-suite.org.

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REFERENCE
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If you use this program in your research, please cite:

Timothy L. Bailey,
"STREME: Accurate and versatile sequence motif discovery",
bioRxiv, (preprint), Nov. 23, 2020.
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ALPHABET= ACGT

strands: + -

Background letter frequencies
A 0.244 C 0.256 G 0.256 T 0.244 

MOTIF 1-TGAACCCA STREME-1
letter-probability matrix: alength= 4 w= 8 nsites= 15 P= 2.4e-001
 0.002797 0.002923 0.002923 0.991357
 0.002797 0.082224 0.912181 0.002797
 0.958528 0.002923 0.002923 0.035625
 0.912055 0.002923 0.002923 0.082099
 0.002797 0.991482 0.002923 0.002797
 0.002797 0.991482 0.002923 0.002797
 0.082099 0.832880 0.002923 0.082099
 0.832499 0.002923 0.161781 0.002797

MOTIF 2-AGCAACAG STREME-2
letter-probability matrix: alength= 4 w= 8 nsites= 27 P= 9.5e-001
 0.820576 0.052630 0.125004 0.001790
 0.087165 0.001871 0.909174 0.001790
 0.001790 0.841533 0.154886 0.001790
 0.756653 0.087245 0.052630 0.103472
 0.994467 0.001871 0.001871 0.001790
 0.154559 0.841780 0.001871 0.001790
 0.994467 0.001871 0.001871 0.001790
 0.103472 0.001871 0.883158 0.011499

MOTIF 3-GTCACCTC STREME-3
letter-probability matrix: alength= 4 w= 8 nsites= 17 P= 1.0e+000
 0.127216 0.002300 0.868283 0.002201
 0.002201 0.002300 0.002300 0.993198
 0.002201 0.679242 0.316355 0.002201
 0.993198 0.002300 0.002300 0.002201
 0.002201 0.967463 0.002300 0.028036
 0.127216 0.680459 0.002300 0.190025
 0.064608 0.002300 0.002300 0.930791
 0.028036 0.967463 0.002300 0.002201

MOTIF 4-AGGGTCCC STREME-4
letter-probability matrix: alength= 4 w= 8 nsites= 49 P= 1.0e+000
 0.741288 0.080074 0.080623 0.098015
 0.074756 0.068341 0.720793 0.136111
 0.040371 0.078357 0.801357 0.079915
 0.153024 0.006613 0.819860 0.020503
 0.010601 0.024751 0.006613 0.958035
 0.040371 0.919528 0.019599 0.020503
 0.103507 0.770360 0.088209 0.037924
 0.068437 0.761557 0.119682 0.050324

MOTIF 5-GGTGGGGA STREME-5
letter-probability matrix: alength= 4 w= 8 nsites= 18 P= 1.0e+000
 0.002013 0.034103 0.961871 0.002013
 0.025640 0.002104 0.913168 0.059088
 0.002013 0.002104 0.002104 0.993779
 0.002013 0.025731 0.786833 0.185423
 0.002013 0.002104 0.993870 0.002013
 0.002013 0.002104 0.936795 0.059088
 0.002013 0.002104 0.936795 0.059088
 0.764001 0.002104 0.002104 0.231791

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Stopped because maximum number of motifs (5) reached.
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COMMAND:	streme --p ../result/final_prediction/K562/fasta/RankLinear5.0_60/BRD4.fasta --oc ../result/final_prediction/K562/inference_raw/STREME/RankLinear5.0_60_BRD4/ --w 8 --nmotifs 5 --verbosity 1
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CPU:		c17n09.farnam.hpc.yale.internal
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FINALTIME:	4.02 seconds
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