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STREME - Sensitive, Thorough, Rapid, Enriched Motif Elicitation
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MEME version 5.3.3 (Release date: Sun Feb 7 15:39:52 2021 -0800)

For further information on how to interpret these results please access https://meme-suite.org/meme.
To get a copy of the MEME Suite software please access https://meme-suite.org.

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REFERENCE
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If you use this program in your research, please cite:

Timothy L. Bailey,
"STREME: Accurate and versatile sequence motif discovery",
bioRxiv, (preprint), Nov. 23, 2020.
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ALPHABET= ACGT

strands: + -

Background letter frequencies
A 0.364 C 0.136 G 0.136 T 0.364 

MOTIF 1-AAAGAAAA STREME-1
letter-probability matrix: alength= 4 w= 8 nsites= 41 P= 1.2e-001
 0.993526 0.001385 0.001385 0.003704
 0.993526 0.001385 0.001385 0.003704
 0.852198 0.142713 0.001385 0.003704
 0.003704 0.001385 0.991207 0.003704
 0.734461 0.241594 0.001385 0.022560
 0.782930 0.142713 0.001385 0.072972
 0.993526 0.001385 0.001385 0.003704
 0.993526 0.001385 0.001385 0.003704

MOTIF 2-ACAAAYAC STREME-2
letter-probability matrix: alength= 4 w= 8 nsites= 27 P= 7.6e-001
 0.853730 0.000658 0.143852 0.001759
 0.001759 0.995823 0.000658 0.001759
 0.688670 0.101201 0.000658 0.209471
 0.864052 0.000658 0.133530 0.001759
 0.996924 0.000658 0.000658 0.001759
 0.001759 0.519053 0.000658 0.478530
 0.594213 0.201852 0.202176 0.001759
 0.001759 0.995823 0.000658 0.001759

MOTIF 3-AGAGGGCA STREME-3
letter-probability matrix: alength= 4 w= 8 nsites= 36 P= 8.8e-001
 0.622925 0.031252 0.092751 0.253072
 0.106249 0.031252 0.860889 0.001609
 0.800497 0.031252 0.031252 0.136999
 0.001609 0.000602 0.860593 0.137196
 0.001609 0.000602 0.903932 0.093857
 0.014297 0.000602 0.922190 0.062910
 0.222322 0.713968 0.000602 0.063108
 0.769747 0.062002 0.013290 0.154961

MOTIF 4-ATTGATGA STREME-4
letter-probability matrix: alength= 4 w= 8 nsites= 22 P= 9.5e-001
 0.982236 0.000690 0.015230 0.001844
 0.036968 0.015230 0.003915 0.943887
 0.056110 0.000690 0.000690 0.942510
 0.114715 0.000690 0.783956 0.100639
 0.926528 0.035814 0.000690 0.036968
 0.072205 0.000690 0.015230 0.911875
 0.042544 0.035814 0.743040 0.178602
 0.919697 0.007408 0.000690 0.072205

MOTIF 5-ATTGGAWR STREME-5
letter-probability matrix: alength= 4 w= 8 nsites= 29 P= 1.0e+000
 0.762985 0.233920 0.000842 0.002252
 0.002252 0.000842 0.000842 0.996063
 0.002252 0.043740 0.000842 0.953166
 0.002252 0.043740 0.951756 0.002252
 0.002252 0.000842 0.994653 0.002252
 0.691250 0.305655 0.000842 0.002252
 0.561583 0.000842 0.000842 0.436732
 0.652467 0.000842 0.344438 0.002252

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Stopped because maximum number of motifs (5) reached.
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COMMAND:	streme --p ../result/final_prediction/K562/fasta/RankLinear5.0_60/BRCA1.fasta --oc ../result/final_prediction/K562/inference_raw/STREME/RankLinear5.0_60_BRCA1/ --w 8 --nmotifs 5 --verbosity 1
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CPU:		c22n05.farnam.hpc.yale.internal
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FINALTIME:	2.31 seconds
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