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STREME - Sensitive, Thorough, Rapid, Enriched Motif Elicitation
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MEME version 5.3.3 (Release date: Sun Feb 7 15:39:52 2021 -0800)

For further information on how to interpret these results please access https://meme-suite.org/meme.
To get a copy of the MEME Suite software please access https://meme-suite.org.

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REFERENCE
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If you use this program in your research, please cite:

Timothy L. Bailey,
"STREME: Accurate and versatile sequence motif discovery",
bioRxiv, (preprint), Nov. 23, 2020.
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ALPHABET= ACGT

strands: + -

Background letter frequencies
A 0.22 C 0.28 G 0.28 T 0.22 

MOTIF 1-KCACGTGM STREME-1
letter-probability matrix: alength= 4 w= 8 nsites= 239 P= 2.0e-008
 0.084508 0.000295 0.595133 0.320064
 0.045245 0.954228 0.000295 0.000232
 0.960647 0.023856 0.009123 0.006374
 0.000232 0.999241 0.000295 0.000232
 0.000232 0.000295 0.999241 0.000232
 0.006374 0.009123 0.023856 0.960647
 0.000232 0.000295 0.954228 0.045245
 0.320064 0.595133 0.000295 0.084508

MOTIF 2-AGCCCAGG STREME-2
letter-probability matrix: alength= 4 w= 8 nsites= 46 P= 7.6e-001
 0.968534 0.025095 0.005138 0.001233
 0.017320 0.009003 0.933583 0.040094
 0.040094 0.781758 0.138055 0.040094
 0.001233 0.979877 0.017657 0.001233
 0.079079 0.902031 0.001570 0.017320
 0.846612 0.079415 0.001570 0.072402
 0.118190 0.001570 0.879007 0.001233
 0.065685 0.076496 0.817725 0.040094

MOTIF 3-ATTCAAAA STREME-3
letter-probability matrix: alength= 4 w= 8 nsites= 16 P= 7.6e-001
 0.992073 0.002846 0.002846 0.002236
 0.002236 0.002846 0.002846 0.992073
 0.284687 0.002846 0.002846 0.709622
 0.002236 0.992683 0.002846 0.002236
 0.921631 0.002846 0.073288 0.002236
 0.921631 0.002846 0.002846 0.072678
 0.992073 0.002846 0.002846 0.002236
 0.709622 0.285296 0.002846 0.002236

MOTIF 4-CTGAGTCA STREME-4
letter-probability matrix: alength= 4 w= 8 nsites= 19 P= 1.0e+000
 0.020000 0.934545 0.025455 0.020000
 0.020000 0.025455 0.025455 0.929091
 0.020000 0.025455 0.934545 0.020000
 0.929091 0.025455 0.025455 0.020000
 0.020000 0.025455 0.934545 0.020000
 0.020000 0.025455 0.025455 0.929091
 0.020000 0.934545 0.025455 0.020000
 0.929091 0.025455 0.025455 0.020000

MOTIF 5-ACTACAGG STREME-5
letter-probability matrix: alength= 4 w= 8 nsites= 22 P= 1.0e+000
 0.906513 0.046041 0.046041 0.001405
 0.045658 0.951149 0.001788 0.001405
 0.045658 0.046041 0.020107 0.888193
 0.683958 0.179661 0.001788 0.134594
 0.090054 0.818103 0.090438 0.001405
 0.906513 0.001788 0.046041 0.045658
 0.001405 0.001788 0.995403 0.001405
 0.045658 0.001788 0.862500 0.090054

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Stopped because maximum number of motifs (5) reached.
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COMMAND:	streme --p ../result/final_prediction/K562/fasta/RankLinear5.0_60/BHLHE40.fasta --oc ../result/final_prediction/K562/inference_raw/STREME/RankLinear5.0_60_BHLHE40/ --w 8 --nmotifs 5 --verbosity 1
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CPU:		c17n09.farnam.hpc.yale.internal
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FINALTIME:	1.66 seconds
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