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STREME - Sensitive, Thorough, Rapid, Enriched Motif Elicitation
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MEME version 5.3.3 (Release date: Sun Feb 7 15:39:52 2021 -0800)

For further information on how to interpret these results please access https://meme-suite.org/meme.
To get a copy of the MEME Suite software please access https://meme-suite.org.

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REFERENCE
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If you use this program in your research, please cite:

Timothy L. Bailey,
"STREME: Accurate and versatile sequence motif discovery",
bioRxiv, (preprint), Nov. 23, 2020.
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ALPHABET= ACGT

strands: + -

Background letter frequencies
A 0.276 C 0.224 G 0.224 T 0.276 

MOTIF 1-AATAAACA STREME-1
letter-probability matrix: alength= 4 w= 8 nsites= 24 P= 1.2e-001
 0.940864 0.001727 0.001727 0.055681
 0.994410 0.001727 0.001727 0.002135
 0.002135 0.001727 0.001727 0.994410
 0.679519 0.055273 0.001727 0.263481
 0.962002 0.001727 0.023894 0.012377
 0.833600 0.108991 0.001727 0.055681
 0.002135 0.832847 0.001727 0.163291
 0.994410 0.001727 0.001727 0.002135

MOTIF 2-GAAGTCAG STREME-2
letter-probability matrix: alength= 4 w= 8 nsites= 69 P= 1.6e-001
 0.315396 0.000697 0.683046 0.000861
 0.843007 0.155435 0.000697 0.000861
 0.911271 0.065569 0.022298 0.000861
 0.022462 0.000697 0.975979 0.000861
 0.080395 0.241766 0.080300 0.597538
 0.022462 0.911176 0.000697 0.065664
 0.997745 0.000697 0.000697 0.000861
 0.253986 0.022298 0.701254 0.022462

MOTIF 3-CTGAGCTA STREME-3
letter-probability matrix: alength= 4 w= 8 nsites= 48 P= 5.0e-001
 0.026644 0.894560 0.026448 0.052348
 0.001022 0.052153 0.000827 0.945999
 0.104006 0.000827 0.883539 0.011628
 0.868761 0.052153 0.000827 0.078260
 0.044116 0.026448 0.917807 0.011628
 0.026644 0.945886 0.026448 0.001022
 0.001022 0.000827 0.000827 0.997325
 0.997325 0.000827 0.000827 0.001022

MOTIF 4-GTGGCTCA STREME-4
letter-probability matrix: alength= 4 w= 8 nsites= 55 P= 5.0e-001
 0.051174 0.000808 0.947020 0.000999
 0.140535 0.000808 0.025855 0.832802
 0.000999 0.000808 0.997194 0.000999
 0.122780 0.025855 0.800272 0.051093
 0.000999 0.810277 0.000808 0.187916
 0.000999 0.000808 0.037520 0.960673
 0.026046 0.972147 0.000808 0.000999
 0.846354 0.034489 0.118158 0.000999

MOTIF 5-GCTCTACC STREME-5
letter-probability matrix: alength= 4 w= 8 nsites= 14 P= 1.0e+000
 0.025127 0.020327 0.929418 0.025127
 0.025127 0.929418 0.020327 0.025127
 0.025127 0.020327 0.020327 0.934218
 0.025127 0.929418 0.020327 0.025127
 0.025127 0.020327 0.020327 0.934218
 0.934218 0.020327 0.020327 0.025127
 0.025127 0.929418 0.020327 0.025127
 0.025127 0.929418 0.020327 0.025127

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Stopped because maximum number of motifs (5) reached.
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COMMAND:	streme --p ../result/final_prediction/K562/fasta/RankLinear5.0_60/BDP1.fasta --oc ../result/final_prediction/K562/inference_raw/STREME/RankLinear5.0_60_BDP1/ --w 8 --nmotifs 5 --verbosity 1
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CPU:		c22n05.farnam.hpc.yale.internal
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FINALTIME:	2.26 seconds
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