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STREME - Sensitive, Thorough, Rapid, Enriched Motif Elicitation
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MEME version 5.3.3 (Release date: Sun Feb 7 15:39:52 2021 -0800)

For further information on how to interpret these results please access https://meme-suite.org/meme.
To get a copy of the MEME Suite software please access https://meme-suite.org.

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REFERENCE
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If you use this program in your research, please cite:

Timothy L. Bailey,
"STREME: Accurate and versatile sequence motif discovery",
bioRxiv, (preprint), Nov. 23, 2020.
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ALPHABET= ACGT

strands: + -

Background letter frequencies
A 0.298 C 0.202 G 0.202 T 0.298 

MOTIF 1-GACTCAGC STREME-1
letter-probability matrix: alength= 4 w= 8 nsites= 218 P= 5.3e-010
 0.000164 0.000111 0.999562 0.000164
 0.999615 0.000111 0.000111 0.000164
 0.019300 0.974027 0.000111 0.006562
 0.014978 0.003927 0.011542 0.969553
 0.019265 0.980460 0.000111 0.000164
 0.999615 0.000111 0.000111 0.000164
 0.003731 0.000111 0.975539 0.020620
 0.000164 0.999562 0.000111 0.000164

MOTIF 2-TAAGGGAA STREME-2
letter-probability matrix: alength= 4 w= 8 nsites= 34 P= 2.4e-001
 0.001568 0.037473 0.001059 0.959900
 0.740354 0.147423 0.001059 0.111164
 0.871564 0.037473 0.001059 0.089904
 0.089904 0.146834 0.725279 0.037983
 0.074515 0.001059 0.922859 0.001568
 0.001568 0.001059 0.944316 0.053057
 0.996315 0.001059 0.001059 0.001568
 0.777475 0.074005 0.074005 0.074515

MOTIF 3-TTACAAAA STREME-3
letter-probability matrix: alength= 4 w= 8 nsites= 51 P= 3.3e-001
 0.251490 0.111178 0.000875 0.636457
 0.031381 0.000875 0.000875 0.966869
 0.996955 0.000875 0.000875 0.001296
 0.001296 0.776319 0.221090 0.001296
 0.936783 0.030960 0.000875 0.031381
 0.936783 0.030960 0.000875 0.031381
 0.818737 0.000875 0.149006 0.031381
 0.893886 0.000875 0.000875 0.104364

MOTIF 4-TTTSSAAA STREME-4
letter-probability matrix: alength= 4 w= 8 nsites= 15 P= 5.0e-001
 0.027136 0.018318 0.018318 0.936227
 0.027136 0.018318 0.018318 0.936227
 0.027136 0.018318 0.018318 0.936227
 0.027136 0.472864 0.472864 0.027136
 0.027136 0.472864 0.472864 0.027136
 0.936227 0.018318 0.018318 0.027136
 0.936227 0.018318 0.018318 0.027136
 0.936227 0.018318 0.018318 0.027136

MOTIF 5-CACACAGA STREME-5
letter-probability matrix: alength= 4 w= 8 nsites= 22 P= 7.6e-001
 0.002591 0.960651 0.001749 0.035009
 0.993911 0.001749 0.001749 0.002591
 0.002591 0.993069 0.001749 0.002591
 0.873190 0.122470 0.001749 0.002591
 0.296249 0.639245 0.001749 0.062757
 0.933745 0.001749 0.061915 0.002591
 0.002591 0.001749 0.932806 0.062854
 0.993911 0.001749 0.001749 0.002591

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Stopped because maximum number of motifs (5) reached.
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COMMAND:	streme --p ../result/final_prediction/K562/fasta/RankLinear5.0_60/BACH1.fasta --oc ../result/final_prediction/K562/inference_raw/STREME/RankLinear5.0_60_BACH1/ --w 8 --nmotifs 5 --verbosity 1
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CPU:		c22n05.farnam.hpc.yale.internal
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FINALTIME:	3.04 seconds
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