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STREME - Sensitive, Thorough, Rapid, Enriched Motif Elicitation
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MEME version 5.3.3 (Release date: Sun Feb 7 15:39:52 2021 -0800)

For further information on how to interpret these results please access https://meme-suite.org/meme.
To get a copy of the MEME Suite software please access https://meme-suite.org.

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REFERENCE
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If you use this program in your research, please cite:

Timothy L. Bailey,
"STREME: Accurate and versatile sequence motif discovery",
bioRxiv, (preprint), Nov. 23, 2020.
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ALPHABET= ACGT

strands: + -

Background letter frequencies
A 0.25 C 0.25 G 0.25 T 0.25 

MOTIF 1-TGACGTCA STREME-1
letter-probability matrix: alength= 4 w= 8 nsites= 209 P= 6.2e-011
 0.000206 0.000206 0.000206 0.999382
 0.000206 0.000206 0.928571 0.071017
 0.999382 0.000206 0.000206 0.000206
 0.000206 0.822123 0.040031 0.137640
 0.137640 0.040031 0.822123 0.000206
 0.000206 0.000206 0.000206 0.999382
 0.071017 0.928571 0.000206 0.000206
 0.999382 0.000206 0.000206 0.000206

MOTIF 2-CCGGGAGT STREME-2
letter-probability matrix: alength= 4 w= 8 nsites= 29 P= 7.0e-001
 0.001825 0.943973 0.052377 0.001825
 0.001825 0.909497 0.001822 0.086856
 0.179385 0.001822 0.664814 0.153980
 0.001825 0.001822 0.994528 0.001825
 0.001825 0.001822 0.994528 0.001825
 0.893421 0.052377 0.001822 0.052380
 0.001825 0.001822 0.943973 0.052380
 0.052380 0.103095 0.124460 0.720065

MOTIF 3-AAACAAGA STREME-3
letter-probability matrix: alength= 4 w= 8 nsites= 27 P= 7.6e-001
 0.775278 0.147286 0.002603 0.074833
 0.847504 0.002603 0.002603 0.147290
 0.992187 0.002603 0.002603 0.002607
 0.002607 0.992183 0.002603 0.002607
 0.919962 0.002603 0.002603 0.074833
 0.992187 0.002603 0.002603 0.002607
 0.002607 0.147286 0.775274 0.074833
 0.774812 0.002603 0.002603 0.219982

MOTIF 4-CAAACCCC STREME-4
letter-probability matrix: alength= 4 w= 8 nsites= 29 P= 8.8e-001
 0.072423 0.853874 0.072421 0.001282
 0.687489 0.072421 0.179076 0.061014
 0.951020 0.010847 0.036850 0.001282
 0.981457 0.001280 0.015981 0.001282
 0.036795 0.925129 0.001280 0.036795
 0.108166 0.846966 0.036793 0.008075
 0.087125 0.839172 0.072421 0.001282
 0.108166 0.818131 0.001280 0.072423

MOTIF 5-AGCCAATA STREME-5
letter-probability matrix: alength= 4 w= 8 nsites= 28 P= 1.0e+000
 0.825101 0.035406 0.104085 0.035408
 0.015381 0.001232 0.947980 0.035408
 0.035408 0.927953 0.001232 0.035408
 0.035408 0.927953 0.035406 0.001234
 0.982156 0.015379 0.001232 0.001234
 0.859386 0.069690 0.069690 0.001234
 0.035408 0.001232 0.035406 0.927955
 0.576867 0.173490 0.138591 0.111053

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Stopped because maximum number of motifs (5) reached.
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COMMAND:	streme --p ../result/final_prediction/K562/fasta/RankLinear5.0_60/ATF7.fasta --oc ../result/final_prediction/K562/inference_raw/STREME/RankLinear5.0_60_ATF7/ --w 8 --nmotifs 5 --verbosity 1
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CPU:		c22n08.farnam.hpc.yale.internal
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FINALTIME:	3.73 seconds
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