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STREME - Sensitive, Thorough, Rapid, Enriched Motif Elicitation
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MEME version 5.3.3 (Release date: Sun Feb 7 15:39:52 2021 -0800)

For further information on how to interpret these results please access https://meme-suite.org/meme.
To get a copy of the MEME Suite software please access https://meme-suite.org.

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REFERENCE
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If you use this program in your research, please cite:

Timothy L. Bailey,
"STREME: Accurate and versatile sequence motif discovery",
bioRxiv, (preprint), Nov. 23, 2020.
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ALPHABET= ACGT

strands: + -

Background letter frequencies
A 0.288 C 0.212 G 0.212 T 0.288 

MOTIF 1-TGATGCAA STREME-1
letter-probability matrix: alength= 4 w= 8 nsites= 239 P= 3.6e-009
 0.000131 0.003243 0.000096 0.996531
 0.000131 0.000096 0.999643 0.000131
 0.999677 0.000096 0.000096 0.000131
 0.000131 0.019157 0.000096 0.980616
 0.000131 0.000096 0.999643 0.000131
 0.000131 0.971903 0.000096 0.027870
 0.999677 0.000096 0.000096 0.000131
 0.999677 0.000096 0.000096 0.000131

MOTIF 2-GTGAGCCA STREME-2
letter-probability matrix: alength= 4 w= 8 nsites= 23 P= 3.0e-001
 0.026145 0.019309 0.928400 0.026145
 0.026145 0.019309 0.019309 0.935236
 0.026145 0.019309 0.928400 0.026145
 0.935236 0.019309 0.019309 0.026145
 0.026145 0.019309 0.928400 0.026145
 0.026145 0.928400 0.019309 0.026145
 0.026145 0.928400 0.019309 0.026145
 0.935236 0.019309 0.019309 0.026145

MOTIF 3-GTCTCAAA STREME-3
letter-probability matrix: alength= 4 w= 8 nsites= 20 P= 3.0e-001
 0.003081 0.002275 0.991563 0.003081
 0.003081 0.002275 0.002275 0.992369
 0.003081 0.991563 0.002275 0.003081
 0.003081 0.002275 0.002275 0.992369
 0.003081 0.991563 0.002275 0.003081
 0.768893 0.002275 0.225751 0.003081
 0.992369 0.002275 0.002275 0.003081
 0.992369 0.002275 0.002275 0.003081

MOTIF 4-CTCCCCCT STREME-4
letter-probability matrix: alength= 4 w= 8 nsites= 27 P= 5.0e-001
 0.002537 0.931920 0.063007 0.002537
 0.125000 0.001873 0.001873 0.871254
 0.063670 0.931920 0.001873 0.002537
 0.002537 0.931920 0.063007 0.002537
 0.063670 0.624275 0.309519 0.002537
 0.300914 0.694677 0.001873 0.002537
 0.002537 0.993054 0.001873 0.002537
 0.002537 0.001873 0.001873 0.993717

MOTIF 5-RCCCAGGR STREME-5
letter-probability matrix: alength= 4 w= 8 nsites= 42 P= 7.6e-001
 0.622596 0.000644 0.319550 0.057210
 0.060311 0.830566 0.108252 0.000872
 0.000872 0.976607 0.000644 0.021878
 0.000872 0.997613 0.000644 0.000872
 0.953280 0.000644 0.000644 0.045433
 0.021878 0.000644 0.976607 0.000872
 0.294846 0.000644 0.703639 0.000872
 0.271337 0.193338 0.525757 0.009568

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Stopped because maximum number of motifs (5) reached.
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COMMAND:	streme --p ../result/final_prediction/K562/fasta/RankLinear5.0_60/ATF4.fasta --oc ../result/final_prediction/K562/inference_raw/STREME/RankLinear5.0_60_ATF4/ --w 8 --nmotifs 5 --verbosity 1
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CPU:		c22n08.farnam.hpc.yale.internal
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FINALTIME:	2.61 seconds
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