********************************************************************************
STREME - Sensitive, Thorough, Rapid, Enriched Motif Elicitation
********************************************************************************
MEME version 5.3.3 (Release date: Sun Feb 7 15:39:52 2021 -0800)

For further information on how to interpret these results please access https://meme-suite.org/meme.
To get a copy of the MEME Suite software please access https://meme-suite.org.

********************************************************************************


********************************************************************************
REFERENCE
********************************************************************************
If you use this program in your research, please cite:

Timothy L. Bailey,
"STREME: Accurate and versatile sequence motif discovery",
bioRxiv, (preprint), Nov. 23, 2020.
********************************************************************************


ALPHABET= ACGT

strands: + -

Background letter frequencies
A 0.216 C 0.284 G 0.284 T 0.216 

MOTIF 1-TCACGTGA STREME-1
letter-probability matrix: alength= 4 w= 8 nsites= 89 P= 3.2e-004
 0.018002 0.162176 0.130504 0.689319
 0.013352 0.958183 0.000740 0.027725
 0.997955 0.000740 0.000740 0.000565
 0.018681 0.905140 0.000740 0.075439
 0.075439 0.000740 0.905140 0.018681
 0.000565 0.000740 0.000740 0.997955
 0.027725 0.000740 0.958183 0.013352
 0.689319 0.130504 0.162176 0.018002

MOTIF 2-AAGGGAGG STREME-2
letter-probability matrix: alength= 4 w= 8 nsites= 34 P= 2.1e-001
 0.892146 0.050944 0.028334 0.028576
 0.849679 0.028845 0.120610 0.000865
 0.000865 0.001134 0.941624 0.056377
 0.017641 0.112247 0.785845 0.084267
 0.168756 0.022541 0.780127 0.028576
 0.985396 0.012605 0.001134 0.000865
 0.040048 0.056646 0.887510 0.015796
 0.028666 0.001134 0.941624 0.028576

MOTIF 3-AGAAGCTG STREME-3
letter-probability matrix: alength= 4 w= 8 nsites= 25 P= 5.0e-001
 0.825077 0.002292 0.170882 0.001749
 0.001749 0.058308 0.882178 0.057765
 0.937651 0.002292 0.002292 0.057765
 0.881455 0.002292 0.002292 0.113961
 0.057765 0.002292 0.882178 0.057765
 0.001749 0.994210 0.002292 0.001749
 0.001749 0.002292 0.002292 0.993667
 0.095965 0.058308 0.731766 0.113961

MOTIF 4-ATTGGCTG STREME-4
letter-probability matrix: alength= 4 w= 8 nsites= 18 P= 7.6e-001
 0.928764 0.025782 0.025782 0.019673
 0.019673 0.025782 0.025782 0.928764
 0.019673 0.025782 0.025782 0.928764
 0.019673 0.025782 0.934873 0.019673
 0.019673 0.025782 0.934873 0.019673
 0.019673 0.934873 0.025782 0.019673
 0.019673 0.025782 0.025782 0.928764
 0.019673 0.025782 0.934873 0.019673

MOTIF 5-AGGTGTGG STREME-5
letter-probability matrix: alength= 4 w= 8 nsites= 21 P= 7.6e-001
 0.992421 0.002743 0.002743 0.002093
 0.002093 0.002743 0.993071 0.002093
 0.002093 0.002743 0.993071 0.002093
 0.002093 0.137048 0.002743 0.858116
 0.002093 0.137265 0.858549 0.002093
 0.002093 0.137048 0.002743 0.858116
 0.002093 0.002743 0.993071 0.002093
 0.002093 0.204525 0.791288 0.002093

********************************************************************************
Stopped because maximum number of motifs (5) reached.
********************************************************************************
COMMAND:	streme --p ../result/final_prediction/K562/fasta/RankLinear5.0_60/ATF3.fasta --oc ../result/final_prediction/K562/inference_raw/STREME/RankLinear5.0_60_ATF3/ --w 8 --nmotifs 5 --verbosity 1
********************************************************************************
CPU:		c17n09.farnam.hpc.yale.internal
********************************************************************************
FINALTIME:	3.17 seconds
********************************************************************************