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STREME - Sensitive, Thorough, Rapid, Enriched Motif Elicitation
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MEME version 5.3.3 (Release date: Sun Feb 7 15:39:52 2021 -0800)

For further information on how to interpret these results please access https://meme-suite.org/meme.
To get a copy of the MEME Suite software please access https://meme-suite.org.

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REFERENCE
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If you use this program in your research, please cite:

Timothy L. Bailey,
"STREME: Accurate and versatile sequence motif discovery",
bioRxiv, (preprint), Nov. 23, 2020.
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ALPHABET= ACGT

strands: + -

Background letter frequencies
A 0.209 C 0.291 G 0.291 T 0.209 

MOTIF 1-ACGTCAYM STREME-1
letter-probability matrix: alength= 4 w= 8 nsites= 127 P= 2.9e-004
 0.959220 0.000494 0.039930 0.000356
 0.012144 0.909689 0.035895 0.042272
 0.000356 0.000494 0.998794 0.000356
 0.000356 0.053731 0.000494 0.945419
 0.012163 0.986987 0.000494 0.000356
 0.998656 0.000494 0.000494 0.000356
 0.002611 0.468084 0.026080 0.503225
 0.374814 0.465133 0.095829 0.064224

MOTIF 2-CCCCGCCC STREME-2
letter-probability matrix: alength= 4 w= 8 nsites= 22 P= 1.2e-001
 0.019036 0.935509 0.026418 0.019036
 0.019036 0.935509 0.026418 0.019036
 0.019036 0.935509 0.026418 0.019036
 0.019036 0.935509 0.026418 0.019036
 0.019036 0.026418 0.935509 0.019036
 0.019036 0.935509 0.026418 0.019036
 0.019036 0.935509 0.026418 0.019036
 0.019036 0.935509 0.026418 0.019036

MOTIF 3-AAACCAGA STREME-3
letter-probability matrix: alength= 4 w= 8 nsites= 31 P= 2.4e-001
 0.772506 0.155390 0.036256 0.035849
 0.974966 0.001459 0.022524 0.001051
 0.717317 0.175669 0.071165 0.035849
 0.019800 0.754052 0.225096 0.001051
 0.001051 0.996439 0.001459 0.001051
 0.996031 0.001459 0.001459 0.001051
 0.175150 0.036256 0.787543 0.001051
 0.752226 0.175669 0.036256 0.035849

MOTIF 4-CTCGGCTG STREME-4
letter-probability matrix: alength= 4 w= 8 nsites= 17 P= 5.0e-001
 0.002750 0.899661 0.094839 0.002750
 0.002750 0.003816 0.003816 0.989618
 0.002750 0.990684 0.003816 0.002750
 0.002750 0.003816 0.990684 0.002750
 0.002750 0.003816 0.990684 0.002750
 0.002750 0.990684 0.003816 0.002750
 0.002750 0.094839 0.169420 0.732991
 0.002750 0.186155 0.717323 0.093773

MOTIF 5-GCGACAGG STREME-5
letter-probability matrix: alength= 4 w= 8 nsites= 15 P= 7.6e-001
 0.002291 0.155097 0.840321 0.002291
 0.002291 0.992239 0.003179 0.002291
 0.002291 0.003179 0.992239 0.002291
 0.991350 0.003179 0.003179 0.002291
 0.002291 0.992239 0.003179 0.002291
 0.686533 0.003179 0.307997 0.002291
 0.230535 0.079016 0.688158 0.002291
 0.002291 0.003179 0.992239 0.002291

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Stopped because maximum number of motifs (5) reached.
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COMMAND:	streme --p ../result/final_prediction/K562/fasta/RankLinear5.0_60/ATF1.fasta --oc ../result/final_prediction/K562/inference_raw/STREME/RankLinear5.0_60_ATF1/ --w 8 --nmotifs 5 --verbosity 1
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CPU:		c22n04.farnam.hpc.yale.internal
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FINALTIME:	1.69 seconds
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