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STREME - Sensitive, Thorough, Rapid, Enriched Motif Elicitation
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MEME version 5.3.3 (Release date: Sun Feb 7 15:39:52 2021 -0800)

For further information on how to interpret these results please access https://meme-suite.org/meme.
To get a copy of the MEME Suite software please access https://meme-suite.org.

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REFERENCE
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If you use this program in your research, please cite:

Timothy L. Bailey,
"STREME: Accurate and versatile sequence motif discovery",
bioRxiv, (preprint), Nov. 23, 2020.
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ALPHABET= ACGT

strands: + -

Background letter frequencies
A 0.263 C 0.237 G 0.237 T 0.263 

MOTIF 1-CCAATCAG STREME-1
letter-probability matrix: alength= 4 w= 8 nsites= 235 P= 3.6e-009
 0.000153 0.999555 0.000139 0.000153
 0.000153 0.999555 0.000139 0.000153
 0.991466 0.008242 0.000139 0.000153
 0.999569 0.000139 0.000139 0.000153
 0.000153 0.000139 0.000139 0.999569
 0.001897 0.960720 0.037229 0.000153
 0.987305 0.000139 0.012403 0.000153
 0.000153 0.016352 0.983342 0.000153

MOTIF 2-AGCTAGAC STREME-2
letter-probability matrix: alength= 4 w= 8 nsites= 117 P= 2.0e-003
 0.932973 0.021573 0.021573 0.023882
 0.023882 0.021573 0.930664 0.023882
 0.023882 0.930664 0.021573 0.023882
 0.023882 0.021573 0.021573 0.932973
 0.932973 0.021573 0.021573 0.023882
 0.023882 0.021573 0.930664 0.023882
 0.932973 0.021573 0.021573 0.023882
 0.023882 0.930664 0.021573 0.023882

MOTIF 3-ACAGAGTG STREME-3
letter-probability matrix: alength= 4 w= 8 nsites= 146 P= 1.3e-002
 0.977298 0.004032 0.000308 0.018362
 0.000341 0.999010 0.000308 0.000341
 0.999043 0.000308 0.000308 0.000341
 0.000341 0.000308 0.999010 0.000341
 0.962972 0.000308 0.027383 0.009337
 0.000341 0.000308 0.990014 0.009337
 0.000341 0.297246 0.045653 0.656760
 0.000341 0.000308 0.999010 0.000341

MOTIF 4-GGWTTGTA STREME-4
letter-probability matrix: alength= 4 w= 8 nsites= 135 P= 8.5e-002
 0.000370 0.000334 0.998926 0.000370
 0.000370 0.000334 0.989146 0.010150
 0.591629 0.010114 0.000334 0.397923
 0.000370 0.019957 0.000334 0.979339
 0.000370 0.000334 0.000334 0.998961
 0.000370 0.000334 0.998926 0.000370
 0.000370 0.000334 0.000334 0.998961
 0.998961 0.000334 0.000334 0.000370

MOTIF 5-AAAAYGCA STREME-5
letter-probability matrix: alength= 4 w= 8 nsites= 105 P= 8.5e-002
 0.998237 0.000567 0.000567 0.000628
 0.998237 0.000567 0.000567 0.000628
 0.965097 0.017137 0.000567 0.017198
 0.998237 0.000567 0.000567 0.000628
 0.000628 0.610684 0.000567 0.388121
 0.000628 0.000567 0.998177 0.000628
 0.000628 0.820378 0.145173 0.033821
 0.998237 0.000567 0.000567 0.000628

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Stopped because maximum number of motifs (5) reached.
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COMMAND:	streme --p ../result/final_prediction/K562/fasta/RankLinear5.0_60/ASH1L.fasta --oc ../result/final_prediction/K562/inference_raw/STREME/RankLinear5.0_60_ASH1L/ --w 8 --nmotifs 5 --verbosity 1
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CPU:		c23n02.farnam.hpc.yale.internal
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FINALTIME:	1.54 seconds
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