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STREME - Sensitive, Thorough, Rapid, Enriched Motif Elicitation
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MEME version 5.3.3 (Release date: Sun Feb 7 15:39:52 2021 -0800)

For further information on how to interpret these results please access https://meme-suite.org/meme.
To get a copy of the MEME Suite software please access https://meme-suite.org.

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REFERENCE
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If you use this program in your research, please cite:

Timothy L. Bailey,
"STREME: Accurate and versatile sequence motif discovery",
bioRxiv, (preprint), Nov. 23, 2020.
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ALPHABET= ACGT

strands: + -

Background letter frequencies
A 0.272 C 0.228 G 0.228 T 0.272 

MOTIF 1-MTCYAGAA STREME-1
letter-probability matrix: alength= 4 w= 8 nsites= 205 P= 5.8e-006
 0.424342 0.353815 0.040879 0.180965
 0.000384 0.000323 0.000323 0.998970
 0.000384 0.998909 0.000323 0.000384
 0.000384 0.544817 0.019925 0.434874
 0.959623 0.039670 0.000323 0.000384
 0.000384 0.000323 0.998909 0.000384
 0.998970 0.000323 0.000323 0.000384
 0.924569 0.000323 0.000323 0.074785

MOTIF 2-AGATAAGR STREME-2
letter-probability matrix: alength= 4 w= 8 nsites= 38 P= 1.2e-001
 0.922784 0.036306 0.036306 0.004605
 0.001377 0.001158 0.960940 0.036525
 0.961159 0.001158 0.036306 0.001377
 0.001377 0.001158 0.001158 0.996306
 0.996306 0.001158 0.001158 0.001377
 0.937190 0.001158 0.001158 0.060494
 0.142649 0.142430 0.678395 0.036525
 0.534911 0.106941 0.321623 0.036525

MOTIF 3-MTGACTCA STREME-3
letter-probability matrix: alength= 4 w= 8 nsites= 27 P= 2.4e-001
 0.523485 0.377675 0.001569 0.097270
 0.001866 0.001569 0.001569 0.994995
 0.144895 0.001569 0.831954 0.021581
 0.994995 0.001569 0.001569 0.001866
 0.001866 0.994698 0.001569 0.001866
 0.001866 0.001569 0.001569 0.994995
 0.001866 0.899448 0.001569 0.097117
 0.994995 0.001569 0.001569 0.001866

MOTIF 4-GCAGGTCA STREME-4
letter-probability matrix: alength= 4 w= 8 nsites= 16 P= 5.0e-001
 0.024691 0.020764 0.929855 0.024691
 0.024691 0.929855 0.020764 0.024691
 0.933782 0.020764 0.020764 0.024691
 0.024691 0.020764 0.929855 0.024691
 0.024691 0.020764 0.929855 0.024691
 0.024691 0.020764 0.020764 0.933782
 0.024691 0.929855 0.020764 0.024691
 0.933782 0.020764 0.020764 0.024691

MOTIF 5-ACGTAYAC STREME-5
letter-probability matrix: alength= 4 w= 8 nsites= 15 P= 7.6e-001
 0.909414 0.002701 0.084673 0.003212
 0.003212 0.990875 0.002701 0.003212
 0.003212 0.002701 0.990875 0.003212
 0.003212 0.002701 0.002701 0.991386
 0.991386 0.002701 0.002701 0.003212
 0.003212 0.661397 0.002701 0.332690
 0.827178 0.166909 0.002701 0.003212
 0.003212 0.990875 0.002701 0.003212

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Stopped because maximum number of motifs (5) reached.
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COMMAND:	streme --p ../result/final_prediction/K562/fasta/RankLinear5.0_60/ARNT.fasta --oc ../result/final_prediction/K562/inference_raw/STREME/RankLinear5.0_60_ARNT/ --w 8 --nmotifs 5 --verbosity 1
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CPU:		c17n10.farnam.hpc.yale.internal
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FINALTIME:	1.57 seconds
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