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STREME - Sensitive, Thorough, Rapid, Enriched Motif Elicitation
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MEME version 5.3.3 (Release date: Sun Feb 7 15:39:52 2021 -0800)

For further information on how to interpret these results please access https://meme-suite.org/meme.
To get a copy of the MEME Suite software please access https://meme-suite.org.

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REFERENCE
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If you use this program in your research, please cite:

Timothy L. Bailey,
"STREME: Accurate and versatile sequence motif discovery",
bioRxiv, (preprint), Nov. 23, 2020.
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ALPHABET= ACGT

strands: + -

Background letter frequencies
A 0.25 C 0.25 G 0.25 T 0.25 

MOTIF 1-AGRKGGCR STREME-1
letter-probability matrix: alength= 4 w= 8 nsites= 160 P= 5.1e-005
 0.976411 0.022782 0.000403 0.000404
 0.000404 0.000403 0.998789 0.000404
 0.608938 0.011611 0.356669 0.022783
 0.000404 0.038639 0.628341 0.332616
 0.000404 0.000403 0.998789 0.000404
 0.000404 0.000403 0.963864 0.035329
 0.092799 0.814733 0.000403 0.092065
 0.631500 0.000403 0.367693 0.000404

MOTIF 2-CACTTGAG STREME-2
letter-probability matrix: alength= 4 w= 8 nsites= 19 P= 5.0e-001
 0.002106 0.935335 0.060453 0.002106
 0.993688 0.002103 0.002103 0.002106
 0.060456 0.876985 0.060453 0.002106
 0.002106 0.002103 0.236634 0.759157
 0.143653 0.002103 0.002103 0.852141
 0.002106 0.002103 0.993685 0.002106
 0.962248 0.033543 0.002103 0.002106
 0.118994 0.060453 0.701559 0.118994

MOTIF 3-AGAGCTAA STREME-3
letter-probability matrix: alength= 4 w= 8 nsites= 25 P= 5.0e-001
 0.897925 0.001742 0.001742 0.098590
 0.098590 0.147244 0.704075 0.050090
 0.974757 0.001742 0.021755 0.001745
 0.083058 0.001742 0.913454 0.001745
 0.098590 0.897922 0.001742 0.001745
 0.001745 0.001742 0.050087 0.946426
 0.897925 0.001742 0.001742 0.098590
 0.752657 0.098587 0.050165 0.098590

MOTIF 4-AAAACGGC STREME-4
letter-probability matrix: alength= 4 w= 8 nsites= 18 P= 9.5e-001
 0.993054 0.002314 0.002314 0.002318
 0.902266 0.028894 0.002314 0.066526
 0.864638 0.066522 0.066522 0.002318
 0.864638 0.066522 0.002314 0.066526
 0.002318 0.864428 0.002314 0.130941
 0.002318 0.066522 0.864634 0.066526
 0.002318 0.002314 0.993051 0.002318
 0.195563 0.735597 0.066522 0.002318

MOTIF 5-AAAGACAM STREME-5
letter-probability matrix: alength= 4 w= 8 nsites= 46 P= 9.7e-001
 0.991109 0.002962 0.002962 0.002967
 0.908919 0.002962 0.002962 0.085157
 0.744274 0.085152 0.002962 0.167612
 0.002967 0.002962 0.991104 0.002967
 0.991109 0.002962 0.002962 0.002967
 0.002967 0.991104 0.002962 0.002967
 0.744538 0.085152 0.085152 0.085157
 0.333322 0.660749 0.002962 0.002967

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Stopped because maximum number of motifs (5) reached.
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COMMAND:	streme --p ../result/final_prediction/K562/fasta/RankLinear5.0_60/ARID2.fasta --oc ../result/final_prediction/K562/inference_raw/STREME/RankLinear5.0_60_ARID2/ --w 8 --nmotifs 5 --verbosity 1
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CPU:		c17n09.farnam.hpc.yale.internal
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FINALTIME:	1.69 seconds
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