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STREME - Sensitive, Thorough, Rapid, Enriched Motif Elicitation
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MEME version 5.3.3 (Release date: Sun Feb 7 15:39:52 2021 -0800)

For further information on how to interpret these results please access https://meme-suite.org/meme.
To get a copy of the MEME Suite software please access https://meme-suite.org.

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REFERENCE
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If you use this program in your research, please cite:

Timothy L. Bailey,
"STREME: Accurate and versatile sequence motif discovery",
bioRxiv, (preprint), Nov. 23, 2020.
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ALPHABET= ACGT

strands: + -

Background letter frequencies
A 0.272 C 0.228 G 0.228 T 0.272 

MOTIF 1-AGATAAGV STREME-1
letter-probability matrix: alength= 4 w= 8 nsites= 223 P= 5.1e-003
 0.717938 0.046103 0.000284 0.235675
 0.000340 0.000284 0.999035 0.000340
 0.999091 0.000284 0.000284 0.000340
 0.000340 0.000284 0.000284 0.999091
 0.999091 0.000284 0.000284 0.000340
 0.945582 0.012541 0.041537 0.000340
 0.157459 0.132152 0.700979 0.009411
 0.343451 0.216646 0.369445 0.070458

MOTIF 2-TGGAAACA STREME-2
letter-probability matrix: alength= 4 w= 8 nsites= 54 P= 5.5e-002
 0.156720 0.001016 0.062946 0.779319
 0.063145 0.001016 0.903710 0.032130
 0.037037 0.062545 0.824207 0.076210
 0.934924 0.031931 0.031931 0.001214
 0.934924 0.031931 0.001016 0.032130
 0.996754 0.001016 0.001016 0.001214
 0.001214 0.871839 0.001016 0.125931
 0.950741 0.010200 0.031931 0.007128

MOTIF 3-GAGTCABC STREME-3
letter-probability matrix: alength= 4 w= 8 nsites= 25 P= 5.5e-002
 0.002403 0.002010 0.870637 0.124950
 0.932403 0.063185 0.002010 0.002403
 0.002403 0.002010 0.993184 0.002403
 0.002403 0.002010 0.002010 0.993578
 0.002403 0.993184 0.002010 0.002403
 0.871228 0.063185 0.063185 0.002403
 0.063578 0.248294 0.439838 0.248289
 0.002403 0.993184 0.002010 0.002403

MOTIF 4-ATTACCAG STREME-4
letter-probability matrix: alength= 4 w= 8 nsites= 20 P= 1.0e+000
 0.994526 0.001713 0.001713 0.002048
 0.106502 0.263353 0.053856 0.576290
 0.002048 0.001713 0.106166 0.890073
 0.994526 0.001713 0.001713 0.002048
 0.002048 0.994190 0.001713 0.002048
 0.002048 0.994190 0.001713 0.002048
 0.837930 0.001713 0.158309 0.002048
 0.054191 0.210619 0.628855 0.106334

MOTIF 5-AGACATTG STREME-5
letter-probability matrix: alength= 4 w= 8 nsites= 16 P= 1.0e+000
 0.840602 0.002488 0.078212 0.078699
 0.002975 0.002488 0.991563 0.002975
 0.612454 0.154179 0.002488 0.230879
 0.002975 0.991563 0.002488 0.002975
 0.992050 0.002488 0.002488 0.002975
 0.002975 0.002488 0.002488 0.992050
 0.002975 0.002488 0.002488 0.992050
 0.002975 0.002488 0.991563 0.002975

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Stopped because maximum number of motifs (5) reached.
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COMMAND:	streme --p ../result/final_prediction/K562/fasta/RankLinear5.0_60/ARID1B.fasta --oc ../result/final_prediction/K562/inference_raw/STREME/RankLinear5.0_60_ARID1B/ --w 8 --nmotifs 5 --verbosity 1
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CPU:		c22n08.farnam.hpc.yale.internal
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FINALTIME:	2.46 seconds
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