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STREME - Sensitive, Thorough, Rapid, Enriched Motif Elicitation
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MEME version 5.3.3 (Release date: Sun Feb 7 15:39:52 2021 -0800)

For further information on how to interpret these results please access https://meme-suite.org/meme.
To get a copy of the MEME Suite software please access https://meme-suite.org.

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REFERENCE
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If you use this program in your research, please cite:

Timothy L. Bailey,
"STREME: Accurate and versatile sequence motif discovery",
bioRxiv, (preprint), Nov. 23, 2020.
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ALPHABET= ACGT

strands: + -

Background letter frequencies
A 0.257 C 0.243 G 0.243 T 0.257 

MOTIF 1-CAGCCTGG STREME-1
letter-probability matrix: alength= 4 w= 8 nsites= 29 P= 1.7e-001
 0.001522 0.954509 0.001436 0.042533
 0.954595 0.001436 0.042446 0.001522
 0.042533 0.001436 0.954509 0.001522
 0.001522 0.995519 0.001436 0.001522
 0.001522 0.831346 0.124599 0.042533
 0.001522 0.001436 0.001436 0.995606
 0.083543 0.001436 0.748662 0.166359
 0.001522 0.001436 0.995519 0.001522

MOTIF 2-CTGCCTCA STREME-2
letter-probability matrix: alength= 4 w= 8 nsites= 17 P= 2.4e-001
 0.002597 0.992357 0.002449 0.002597
 0.002597 0.282495 0.002449 0.712459
 0.002597 0.002449 0.992357 0.002597
 0.002597 0.992357 0.002449 0.002597
 0.002597 0.992357 0.002449 0.002597
 0.002597 0.002449 0.142585 0.852369
 0.002597 0.992357 0.002449 0.002597
 0.922549 0.002449 0.072405 0.002597

MOTIF 3-MAAATACA STREME-3
letter-probability matrix: alength= 4 w= 8 nsites= 23 P= 7.6e-001
 0.429539 0.520012 0.001648 0.048802
 0.853793 0.048703 0.001648 0.095857
 0.994958 0.001648 0.001648 0.001747
 0.994958 0.001648 0.001648 0.001747
 0.001747 0.001648 0.001648 0.994958
 0.994958 0.001648 0.001648 0.001747
 0.048802 0.806487 0.048703 0.096008
 0.900696 0.095909 0.001648 0.001747

MOTIF 4-AGAGATGG STREME-4
letter-probability matrix: alength= 4 w= 8 nsites= 18 P= 8.8e-001
 0.991630 0.002735 0.002735 0.002900
 0.002900 0.002735 0.991465 0.002900
 0.835143 0.159222 0.002735 0.002900
 0.002900 0.002735 0.991465 0.002900
 0.991630 0.002735 0.002735 0.002900
 0.002900 0.316721 0.002735 0.677644
 0.002900 0.002735 0.991465 0.002900
 0.002900 0.002735 0.991465 0.002900

MOTIF 5-CGMGATCT STREME-5
letter-probability matrix: alength= 4 w= 8 nsites= 14 P= 1.0e+000
 0.002611 0.992316 0.002462 0.002611
 0.072939 0.002462 0.921988 0.002611
 0.499714 0.354330 0.002462 0.143494
 0.002611 0.072791 0.921988 0.002611
 0.922136 0.002462 0.072791 0.002611
 0.002611 0.002462 0.002462 0.992464
 0.002611 0.992316 0.002462 0.002611
 0.002611 0.002462 0.002462 0.992464

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Stopped because maximum number of motifs (5) reached.
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COMMAND:	streme --p ../result/final_prediction/K562/fasta/RankLinear5.0_60/ARHGAP35.fasta --oc ../result/final_prediction/K562/inference_raw/STREME/RankLinear5.0_60_ARHGAP35/ --w 8 --nmotifs 5 --verbosity 1
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CPU:		c22n07.farnam.hpc.yale.internal
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FINALTIME:	1.35 seconds
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