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STREME - Sensitive, Thorough, Rapid, Enriched Motif Elicitation
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MEME version 5.3.3 (Release date: Sun Feb 7 15:39:52 2021 -0800)

For further information on how to interpret these results please access https://meme-suite.org/meme.
To get a copy of the MEME Suite software please access https://meme-suite.org.

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REFERENCE
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If you use this program in your research, please cite:

Timothy L. Bailey,
"STREME: Accurate and versatile sequence motif discovery",
bioRxiv, (preprint), Nov. 23, 2020.
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ALPHABET= ACGT

strands: + -

Background letter frequencies
A 0.16 C 0.34 G 0.34 T 0.16 

MOTIF 1-GCAGGTGA STREME-1
letter-probability matrix: alength= 4 w= 8 nsites= 22 P= 1.2e-001
 0.001410 0.002986 0.933254 0.062350
 0.001410 0.994194 0.002986 0.001410
 0.992618 0.002986 0.002986 0.001410
 0.001410 0.002986 0.872119 0.123486
 0.184229 0.002986 0.811375 0.001410
 0.001410 0.259755 0.002986 0.735849
 0.123290 0.002986 0.872315 0.001410
 0.992618 0.002986 0.002986 0.001410

MOTIF 2-GGCCCCAA STREME-2
letter-probability matrix: alength= 4 w= 8 nsites= 30 P= 5.0e-001
 0.161646 0.018482 0.818948 0.000924
 0.000924 0.001956 0.996196 0.000924
 0.000924 0.916224 0.001956 0.080896
 0.000924 0.755890 0.081800 0.161386
 0.000924 0.836122 0.162030 0.000924
 0.000924 0.956274 0.001956 0.040846
 0.818477 0.001956 0.001956 0.177612
 0.995164 0.001956 0.001956 0.000924

MOTIF 3-AGGAAGCA STREME-3
letter-probability matrix: alength= 4 w= 8 nsites= 31 P= 5.0e-001
 0.838329 0.041104 0.001920 0.118647
 0.000907 0.001920 0.996267 0.000907
 0.000907 0.119597 0.878589 0.000907
 0.863526 0.001920 0.133647 0.000907
 0.995254 0.001920 0.001920 0.000907
 0.000907 0.001920 0.996267 0.000907
 0.197015 0.800158 0.001920 0.000907
 0.541599 0.198599 0.023032 0.236770

MOTIF 4-GGACACGG STREME-4
letter-probability matrix: alength= 4 w= 8 nsites= 41 P= 8.8e-001
 0.000644 0.129545 0.869168 0.000644
 0.000644 0.001363 0.874488 0.123506
 0.781106 0.161259 0.001363 0.056273
 0.056273 0.913906 0.001363 0.028458
 0.771267 0.001363 0.143193 0.084177
 0.145216 0.755158 0.001363 0.098264
 0.060550 0.117682 0.821124 0.000644
 0.028458 0.001363 0.774743 0.195436

MOTIF 5-MAGGCCTK STREME-5
letter-probability matrix: alength= 4 w= 8 nsites= 27 P= 8.8e-001
 0.440283 0.460887 0.097637 0.001193
 0.993753 0.002527 0.002527 0.001193
 0.052849 0.002527 0.943431 0.001193
 0.115262 0.002527 0.881017 0.001193
 0.001193 0.881017 0.002527 0.115262
 0.001193 0.943431 0.002527 0.052849
 0.001193 0.002527 0.002527 0.993753
 0.001193 0.097637 0.460887 0.440283

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Stopped because maximum number of motifs (5) reached.
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COMMAND:	streme --p ../result/final_prediction/K562/fasta/RankLinear5.0_60/AGO1.fasta --oc ../result/final_prediction/K562/inference_raw/STREME/RankLinear5.0_60_AGO1/ --w 8 --nmotifs 5 --verbosity 1
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CPU:		c22n04.farnam.hpc.yale.internal
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FINALTIME:	2.89 seconds
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