******************************************************************************** MEME - Motif discovery tool ******************************************************************************** MEME version 5.3.3 (Release date: Sun Feb 7 15:39:52 2021 -0800) For further information on how to interpret these results please access https://meme-suite.org/meme. To get a copy of the MEME Suite software please access https://meme-suite.org. ******************************************************************************** ******************************************************************************** REFERENCE ******************************************************************************** If you use this program in your research, please cite: Timothy L. Bailey and Charles Elkan, "Fitting a mixture model by expectation maximization to discover motifs in biopolymers", Proceedings of the Second International Conference on Intelligent Systems for Molecular Biology, pp. 28-36, AAAI Press, Menlo Park, California, 1994. ******************************************************************************** ******************************************************************************** TRAINING SET ******************************************************************************** PRIMARY SEQUENCES= ../result/final_prediction/K562/fasta/RankLinear0.6_40/ZZZ3.fasta CONTROL SEQUENCES= --none-- ALPHABET= ACGT Sequence name Weight Length Sequence name Weight Length ------------- ------ ------ ------------- ------ ------ chr12:58129958-58130038 1.0000 80 chr20:56099635-56099715 1.0000 80 chr19:50256130-50256210 1.0000 80 chr20:39766829-39766909 1.0000 80 chr19:18433227-18433307 1.0000 80 chr7:120767147-120767227 1.0000 80 chr1:186296674-186296754 1.0000 80 chr9:95046904-95046984 1.0000 80 chr1:19567882-19567962 1.0000 80 chr17:37683565-37683645 1.0000 80 chr17:58433795-58433875 1.0000 80 chr2:85839486-85839566 1.0000 80 chr1:193030728-193030808 1.0000 80 chr7:135306139-135306219 1.0000 80 chr1:12332382-12332462 1.0000 80 chr1:19459402-19459482 1.0000 80 chr10:62749313-62749393 1.0000 80 chr7:2404501-2404581 1.0000 80 chr17:35596785-35596865 1.0000 80 chr10:131908904-13190898 1.0000 80 chr2:183844791-183844871 1.0000 80 chr11:118359356-11835943 1.0000 80 chr21:47442670-47442750 1.0000 80 chr5:54640440-54640520 1.0000 80 chr5:72861207-72861287 1.0000 80 chr6:168227315-168227395 1.0000 80 chr11:47788213-47788293 1.0000 80 chrX:70503637-70503717 1.0000 80 chr19:36630463-36630543 1.0000 80 chr22:22404992-22405072 1.0000 80 chr1:28535516-28535596 1.0000 80 chr7:156969140-156969220 1.0000 80 chr12:74931692-74931772 1.0000 80 chr5:159826972-159827052 1.0000 80 chr11:94226760-94226840 1.0000 80 chr9:135545630-135545710 1.0000 80 chr22:32149647-32149727 1.0000 80 chr16:18843460-18843540 1.0000 80 chr20:56784898-56784978 1.0000 80 chr2:176045733-176045813 1.0000 80 chr12:112480680-11248076 1.0000 80 chr16:74657285-74657365 1.0000 80 chr1:21503224-21503304 1.0000 80 chr19:36248300-36248380 1.0000 80 chr14:45553437-45553517 1.0000 80 chr1:6583925-6584005 1.0000 80 chr1:182816418-182816498 1.0000 80 chr17:36858848-36858928 1.0000 80 chr16:58580869-58580949 1.0000 80 chr16:30547398-30547478 1.0000 80 chr1:154193763-154193843 1.0000 80 chr19:48894062-48894142 1.0000 80 chr15:59430606-59430686 1.0000 80 chr7:138759857-138759937 1.0000 80 chr12:124103215-12410329 1.0000 80 chr17:34901679-34901759 1.0000 80 chr17:57232270-57232350 1.0000 80 chr17:45266401-45266481 1.0000 80 chrX:46988814-46988894 1.0000 80 chr1:46767571-46767651 1.0000 80 chr2:160615396-160615476 1.0000 80 chr1:47694826-47694906 1.0000 80 chr17:34005893-34005973 1.0000 80 chr7:106788108-106788188 1.0000 80 chr7:120672088-120672168 1.0000 80 chr1:200528139-200528219 1.0000 80 chr12:64799386-64799466 1.0000 80 chr1:186327001-186327081 1.0000 80 chr1:185139567-185139647 1.0000 80 chr1:91966498-91966578 1.0000 80 chr11:118661229-11866130 1.0000 80 chr5:415612-415692 1.0000 80 chr19:40336318-40336398 1.0000 80 chr22:21295079-21295159 1.0000 80 chr21:39485480-39485560 1.0000 80 chr6:31665316-31665396 1.0000 80 chr21:47706709-47706789 1.0000 80 chr15:44719856-44719936 1.0000 80 chr22:20925944-20926024 1.0000 80 chr11:116147332-11614741 1.0000 80 chr3:122135117-122135197 1.0000 80 chr22:42017652-42017732 1.0000 80 chr11:17297841-17297921 1.0000 80 chr12:56040178-56040258 1.0000 80 chr6:153304585-153304665 1.0000 80 chr12:121772618-12177269 1.0000 80 chr6:42629503-42629583 1.0000 80 chr4:124399-124479 1.0000 80 chr3:186502079-186502159 1.0000 80 chr17:41150711-41150791 1.0000 80 chr11:62341166-62341246 1.0000 80 chr1:249120875-249120955 1.0000 80 chr12:31226873-31226953 1.0000 80 chr6:147223750-147223830 1.0000 80 chr20:25388336-25388416 1.0000 80 chr10:75910508-75910588 1.0000 80 chr3:184429294-184429374 1.0000 80 chr17:48823152-48823232 1.0000 80 chr10:127408316-12740839 1.0000 80 chr15:44061955-44062035 1.0000 80 chr18:6683665-6683745 1.0000 80 chrX:118925415-118925495 1.0000 80 chr22:41318842-41318922 1.0000 80 chr1:62902665-62902745 1.0000 80 chr16:30662532-30662612 1.0000 80 chr13:41635744-41635824 1.0000 80 chr18:9024604-9024684 1.0000 80 chr1:35545142-35545222 1.0000 80 chrX:71496932-71497012 1.0000 80 chrX:48937430-48937510 1.0000 80 chr1:144918068-144918148 1.0000 80 chr7:120761623-120761703 1.0000 80 chr17:35596998-35597078 1.0000 80 chr14:69864896-69864976 1.0000 80 chr11:57103369-57103449 1.0000 80 chr10:28822996-28823076 1.0000 80 chr14:90798008-90798088 1.0000 80 chr9:37422945-37423025 1.0000 80 chr12:53846312-53846392 1.0000 80 chr11:4116273-4116353 1.0000 80 chr19:49588217-49588297 1.0000 80 chr17:80231421-80231501 1.0000 80 chr1:46713920-46714000 1.0000 80 chr1:16694256-16694336 1.0000 80 chr6:135760065-135760145 1.0000 80 chr14:23564817-23564897 1.0000 80 chr3:47879336-47879416 1.0000 80 chr19:18263646-18263726 1.0000 80 chr5:180673601-180673681 1.0000 80 chr1:19440323-19440403 1.0000 80 chr7:64734470-64734550 1.0000 80 chr11:62438933-62439013 1.0000 80 chr16:69184219-69184299 1.0000 80 chr1:226175386-226175466 1.0000 80 chr11:61197174-61197254 1.0000 80 chr6:43395390-43395470 1.0000 80 chr10:74821002-74821082 1.0000 80 chr11:107879887-10787996 1.0000 80 chr21:40760534-40760614 1.0000 80 chr10:96305586-96305666 1.0000 80 chr4:159771987-159772067 1.0000 80 chr22:38966091-38966171 1.0000 80 chr3:128902237-128902317 1.0000 80 chr15:72767475-72767555 1.0000 80 chr8:74205704-74205784 1.0000 80 chr22:19331752-19331832 1.0000 80 chr7:129806561-129806641 1.0000 80 chr9:33076558-33076638 1.0000 80 chrX:16901254-16901334 1.0000 80 chr3:39425256-39425336 1.0000 80 chr15:65789357-65789437 1.0000 80 chr1:31635723-31635803 1.0000 80 chr18:1406754-1406834 1.0000 80 chr22:36925055-36925135 1.0000 80 chr14:64854591-64854671 1.0000 80 chr9:102861759-102861839 1.0000 80 chr1:12335587-12335667 1.0000 80 chr17:79568646-79568726 1.0000 80 chr17:73201690-73201770 1.0000 80 chr2:152294141-152294221 1.0000 80 chr16:30389956-30390036 1.0000 80 chr17:44364177-44364257 1.0000 80 chr18:43753744-43753824 1.0000 80 chr7:72350774-72350854 1.0000 80 chr17:29159020-29159100 1.0000 80 chr7:139091531-139091611 1.0000 80 chr19:16221971-16222051 1.0000 80 chr2:217363634-217363714 1.0000 80 chr17:38279823-38279903 1.0000 80 chr1:171537998-171538078 1.0000 80 chr5:6618831-6618911 1.0000 80 chr2:157194479-157194559 1.0000 80 chr12:53739149-53739229 1.0000 80 chr2:24307526-24307606 1.0000 80 chr2:153573604-153573684 1.0000 80 chr1:224620629-224620709 1.0000 80 chr10:81108024-81108104 1.0000 80 chr21:35013883-35013963 1.0000 80 chr2:97778961-97779041 1.0000 80 chrX:41192963-41193043 1.0000 80 chr16:88355076-88355156 1.0000 80 chr10:28821865-28821945 1.0000 80 chr11:43333575-43333655 1.0000 80 chr13:99852755-99852835 1.0000 80 chr19:47777018-47777098 1.0000 80 chr11:16760465-16760545 1.0000 80 chr3:15316903-15316983 1.0000 80 chr1:11898882-11898962 1.0000 80 chr7:105988706-105988786 1.0000 80 chr17:73776453-73776533 1.0000 80 chr19:57791856-57791936 1.0000 80 chr19:46917086-46917166 1.0000 80 chr2:219536465-219536545 1.0000 80 chr17:8286375-8286455 1.0000 80 chr1:109290455-109290535 1.0000 80 chr7:87516371-87516451 1.0000 80 chr20:30468012-30468092 1.0000 80 chr11:66036451-66036531 1.0000 80 chr10:70846547-70846627 1.0000 80 chr5:150158668-150158748 1.0000 80 chr2:178199978-178200058 1.0000 80 chr7:73589014-73589094 1.0000 80 chr6:34393697-34393777 1.0000 80 chr18:47018723-47018803 1.0000 80 chr16:14013515-14013595 1.0000 80 chr15:101835050-10183513 1.0000 80 chr22:19477982-19478062 1.0000 80 chr19:47353967-47354047 1.0000 80 chr11:93517858-93517938 1.0000 80 chr4:467766-467846 1.0000 80 chr7:102212998-102213078 1.0000 80 chr11:62495902-62495982 1.0000 80 chr4:125634585-125634665 1.0000 80 chr1:45805490-45805570 1.0000 80 chr9:140222785-140222865 1.0000 80 chr7:102988331-102988411 1.0000 80 chr6:31588572-31588652 1.0000 80 chr8:141475293-141475373 1.0000 80 chr2:223520903-223520983 1.0000 80 chr16:48278251-48278331 1.0000 80 chr9:136215356-136215436 1.0000 80 chrX:53449408-53449488 1.0000 80 chr19:5903749-5903829 1.0000 80 chr11:57298313-57298393 1.0000 80 chr22:39715450-39715530 1.0000 80 chr1:12315424-12315504 1.0000 80 chrX:24712053-24712133 1.0000 80 chr19:49954733-49954813 1.0000 80 chr7:108209856-108209936 1.0000 80 chr1:35659070-35659150 1.0000 80 chr19:36545584-36545664 1.0000 80 chr3:101405390-101405470 1.0000 80 chr6:43872760-43872840 1.0000 80 chr16:70557832-70557912 1.0000 80 chr6:88411759-88411839 1.0000 80 chr1:235492046-235492126 1.0000 80 chr16:4524339-4524419 1.0000 80 chr16:25269476-25269556 1.0000 80 chr5:145530566-145530646 1.0000 80 chr3:197677125-197677205 1.0000 80 chr12:123850293-12385037 1.0000 80 chr2:69596031-69596111 1.0000 80 chr12:54673756-54673836 1.0000 80 chr17:38804074-38804154 1.0000 80 chr7:1500467-1500547 1.0000 80 chr6:170849860-170849940 1.0000 80 chr19:42388328-42388408 1.0000 80 chr2:85864860-85864940 1.0000 80 chr1:235336611-235336691 1.0000 80 chr1:145610733-145610813 1.0000 80 ******************************************************************************** ******************************************************************************** COMMAND LINE SUMMARY ******************************************************************************** This information can also be useful in the event you wish to report a problem with the MEME software. command: meme -oc ../result/final_prediction/K562/inference_raw/MEME/RankLinear0.6_40_ZZZ3/ -dna -nmotifs 5 -w 8 -maxsize 250000 -nostatus ../result/final_prediction/K562/fasta/RankLinear0.6_40/ZZZ3.fasta model: mod= zoops nmotifs= 5 evt= inf objective function: em= E-value of product of p-values starts= E-value of product of p-values strands: + width: minw= 8 maxw= 8 nsites: minsites= 2 maxsites= 250 wnsites= 0.8 theta: spmap= uni spfuzz= 0.5 em: prior= dirichlet b= 0.01 maxiter= 50 distance= 1e-05 trim: wg= 11 ws= 1 endgaps= yes data: n= 20000 N= 250 sample: seed= 0 hsfrac= 0 searchsize= 20000 norand= no csites= 1000 Letter frequencies in dataset: A 0.231 C 0.275 G 0.263 T 0.231 Background letter frequencies (from file dataset with add-one prior applied): A 0.231 C 0.275 G 0.263 T 0.231 Background model order: 0 ******************************************************************************** ******************************************************************************** MOTIF MWTTTWAA MEME-1 width = 8 sites = 24 llr = 218 E-value = 2.7e-001 ******************************************************************************** -------------------------------------------------------------------------------- Motif MWTTTWAA MEME-1 Description -------------------------------------------------------------------------------- Simplified A 66:::5aa pos.-specific C 4::::::: probability G ::::2::: matrix T :4aa85:: bits 2.1 ** ** 1.9 ** ** 1.7 ** ** 1.5 ** ** Relative 1.3 *** ** Entropy 1.1 ******** (13.1 bits) 0.8 ******** 0.6 ******** 0.4 ******** 0.2 ******** 0.0 -------- Multilevel AATTTTAA consensus CT GA sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif MWTTTWAA MEME-1 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr1:109290455-109290535 7 8.11e-06 TTAGAT AATTTTAA GGTTGGCATT chr2:157194479-157194559 72 8.11e-06 TCAAGCCTAC AATTTTAA C chr7:129806561-129806641 61 8.11e-06 CTAACAGAAT AATTTTAA CAAGCAAGAT chr10:74821002-74821082 16 8.11e-06 ctatggagtt aattttaa aatttaactc chr6:135760065-135760145 8 8.11e-06 AAAAGTA AATTTTAA TACTAAAATG chr22:22404992-22405072 64 8.11e-06 aCAGGACTAT AATTTTAA AAATTATGT chr1:19459402-19459482 51 8.11e-06 gaatacacct aattttaa atcttccctt chr17:38279823-38279903 52 1.62e-05 CCAAAGGGTT AATTTAAA ATGACAGCCC chr1:193030728-193030808 38 1.62e-05 TTCTAAATTA AATTTAAA AGTAGAGAAA chr17:41150711-41150791 20 2.43e-05 GGCTTTACGG ATTTTTAA GTGGCCCTTT chr12:112480680-11248076 5 3.24e-05 AGTG ATTTTAAA TATGGAATGG chr6:42629503-42629583 20 4.21e-05 TATTAGCGAT CATTTTAA CCCAGCTGCC chr1:6583925-6584005 6 5.17e-05 GGCCG CATTTAAA GCCTGAAGGC chr7:120767147-120767227 6 5.17e-05 ACGAG CATTTAAA TTTTCAAGAT chr2:223520903-223520983 19 6.14e-05 TTCCTGTTCT CTTTTTAA CCTAAAAACA chr5:54640440-54640520 26 6.14e-05 AGTAATTGTC CTTTTTAA ATCTATAATG chr2:183844791-183844871 7 6.14e-05 GGTTTA CTTTTTAA ACTGTATGCT chr7:87516371-87516451 21 7.10e-05 ATCTTGTGGC CTTTTAAA ATATTACTGG chr7:106788108-106788188 67 7.10e-05 TATGTATTTT CTTTTAAA ATTGTT chr7:105988706-105988786 10 8.95e-05 acaaaacta aattgaaa ttccaggact chr7:120761623-120761703 42 8.95e-05 ACATTTATTT AATTGAAA AACATTGATT chr4:159771987-159772067 44 9.87e-05 ATTATTTTGC ATTTGTAA TATGGGCCTG chr1:224620629-224620709 22 1.08e-04 CCTAAATTGT ATTTGAAA ACAAATGGTT chr22:19331752-19331832 8 1.52e-04 gttgatt ctttgaaa agatgaacaa -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif MWTTTWAA MEME-1 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr1:109290455-109290535 8.1e-06 6_[+1]_66 chr2:157194479-157194559 8.1e-06 71_[+1]_1 chr7:129806561-129806641 8.1e-06 60_[+1]_12 chr10:74821002-74821082 8.1e-06 15_[+1]_57 chr6:135760065-135760145 8.1e-06 7_[+1]_65 chr22:22404992-22405072 8.1e-06 63_[+1]_9 chr1:19459402-19459482 8.1e-06 50_[+1]_22 chr17:38279823-38279903 1.6e-05 51_[+1]_21 chr1:193030728-193030808 1.6e-05 37_[+1]_35 chr17:41150711-41150791 2.4e-05 19_[+1]_53 chr12:112480680-11248076 3.2e-05 4_[+1]_68 chr6:42629503-42629583 4.2e-05 19_[+1]_53 chr1:6583925-6584005 5.2e-05 5_[+1]_67 chr7:120767147-120767227 5.2e-05 5_[+1]_67 chr2:223520903-223520983 6.1e-05 18_[+1]_54 chr5:54640440-54640520 6.1e-05 25_[+1]_47 chr2:183844791-183844871 6.1e-05 6_[+1]_66 chr7:87516371-87516451 7.1e-05 20_[+1]_52 chr7:106788108-106788188 7.1e-05 66_[+1]_6 chr7:105988706-105988786 9e-05 9_[+1]_63 chr7:120761623-120761703 9e-05 41_[+1]_31 chr4:159771987-159772067 9.9e-05 43_[+1]_29 chr1:224620629-224620709 0.00011 21_[+1]_51 chr22:19331752-19331832 0.00015 7_[+1]_65 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif MWTTTWAA MEME-1 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF MWTTTWAA width=8 seqs=24 chr1:109290455-109290535 ( 7) AATTTTAA 1 chr2:157194479-157194559 ( 72) AATTTTAA 1 chr7:129806561-129806641 ( 61) AATTTTAA 1 chr10:74821002-74821082 ( 16) AATTTTAA 1 chr6:135760065-135760145 ( 8) AATTTTAA 1 chr22:22404992-22405072 ( 64) AATTTTAA 1 chr1:19459402-19459482 ( 51) AATTTTAA 1 chr17:38279823-38279903 ( 52) AATTTAAA 1 chr1:193030728-193030808 ( 38) AATTTAAA 1 chr17:41150711-41150791 ( 20) ATTTTTAA 1 chr12:112480680-11248076 ( 5) ATTTTAAA 1 chr6:42629503-42629583 ( 20) CATTTTAA 1 chr1:6583925-6584005 ( 6) CATTTAAA 1 chr7:120767147-120767227 ( 6) CATTTAAA 1 chr2:223520903-223520983 ( 19) CTTTTTAA 1 chr5:54640440-54640520 ( 26) CTTTTTAA 1 chr2:183844791-183844871 ( 7) CTTTTTAA 1 chr7:87516371-87516451 ( 21) CTTTTAAA 1 chr7:106788108-106788188 ( 67) CTTTTAAA 1 chr7:105988706-105988786 ( 10) AATTGAAA 1 chr7:120761623-120761703 ( 42) AATTGAAA 1 chr4:159771987-159772067 ( 44) ATTTGTAA 1 chr1:224620629-224620709 ( 22) ATTTGAAA 1 chr22:19331752-19331832 ( 8) CTTTGAAA 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif MWTTTWAA MEME-1 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 18250 bayes= 10.6693 E= 2.7e-001 143 45 -1123 -1123 133 -1123 -1123 85 -1123 -1123 -1123 212 -1123 -1123 -1123 212 -1123 -1123 -34 178 99 -1123 -1123 123 211 -1123 -1123 -1123 211 -1123 -1123 -1123 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif MWTTTWAA MEME-1 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 24 E= 2.7e-001 0.625000 0.375000 0.000000 0.000000 0.583333 0.000000 0.000000 0.416667 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.208333 0.791667 0.458333 0.000000 0.000000 0.541667 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif MWTTTWAA MEME-1 regular expression -------------------------------------------------------------------------------- [AC][AT]TT[TG][TA]AA -------------------------------------------------------------------------------- Time 5.02 secs. ******************************************************************************** ******************************************************************************** MOTIF AAAACARA MEME-2 width = 8 sites = 27 llr = 227 E-value = 4.0e+003 ******************************************************************************** -------------------------------------------------------------------------------- Motif AAAACARA MEME-2 Description -------------------------------------------------------------------------------- Simplified A 9a98:a56 pos.-specific C ::::9::2 probability G :::2::5: matrix T 1:1:1::2 bits 2.1 * * 1.9 * * 1.7 *** * 1.5 *** ** Relative 1.3 ****** Entropy 1.1 ******* (12.1 bits) 0.8 ******** 0.6 ******** 0.4 ******** 0.2 ******** 0.0 -------- Multilevel AAAACAAA consensus G G sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AAAACARA MEME-2 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr1:235336611-235336691 70 9.65e-06 acacaaaaac aaaacaaa ACA chrX:41192963-41193043 8 9.65e-06 Gaaaaaa aaaacaaa aacaaaaaaa chr22:41318842-41318922 32 9.65e-06 AACATGGATT AAAACAAA GGAAGTCAGT chr16:58580869-58580949 10 9.65e-06 TTCAAAAAC AAAACAAA ACAAAAAACC chr12:74931692-74931772 7 9.65e-06 AACGTC AAAACAAA CAGAAGGACT chr1:35659070-35659150 54 2.06e-05 CTTGCCCAGA AAAACAGA TGTTTTCCGA chr1:12315424-12315504 48 2.06e-05 tttatttaag aaaacaga aaattacagg chr1:109290455-109290535 71 3.03e-05 GAGATGTTTT AAAACAAT GG chr7:105988706-105988786 49 3.03e-05 tatctgatct aaaacaat cactgaagag chr22:39715450-39715530 45 4.13e-05 CCGTGCCCCT AAAGCAAA CCCCCGGCGC chr9:140222785-140222865 50 6.38e-05 ATGATGAGTA AAAACAAC TAATATACAC chr1:186327001-186327081 23 6.38e-05 CCAGTTTTGT AAAACAGT GATCAAATAA chr15:72767475-72767555 42 7.63e-05 GAGGGTGTCG AAAGCAGA GGTTCGCCGA chr17:58433795-58433875 9 7.63e-05 tgaaggct aaagcaga gttgcaaact chr6:88411759-88411839 30 8.94e-05 TCTGAAGTCG AAAACAGC ACCGTGGGGT chr16:70557832-70557912 5 8.94e-05 TAAA AAAACAGC CTGGAGACTT chr18:6683665-6683745 25 8.94e-05 GCCATTGACA AAAACAGC CCTGCTTGGG chr17:73776453-73776533 43 9.90e-05 GTAAATAATA AATACAAA TAAACATGTT chr1:19567882-19567962 9 1.10e-04 taggccta aatacaga gcaccaatca chr7:120767147-120767227 51 1.10e-04 TGAGGACCAA AATACAGA AGAATTCCTT chr2:152294141-152294221 64 1.18e-04 actctattaa aaaataaa aaaTATGAA chr1:19459402-19459482 8 1.18e-04 tgaaacc aaaataaa taaaaataat chr6:170849860-170849940 17 1.48e-04 accagaaata aaagcaat cagtaaagga chr7:120672088-120672168 37 1.48e-04 ttattttggg aaagcaat ctggaaatat chrX:16901254-16901334 29 1.85e-04 ATCCTTTGTT TAAACAGA GAACGTCTTT chr7:138759857-138759937 14 1.85e-04 ggaatagtgc taaacaga atctggccca chr17:79568646-79568726 21 1.99e-04 TGTGCTTCGA AAAGCAGC ATCCTGAGTA -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AAAACARA MEME-2 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr1:235336611-235336691 9.7e-06 69_[+2]_3 chrX:41192963-41193043 9.7e-06 7_[+2]_65 chr22:41318842-41318922 9.7e-06 31_[+2]_41 chr16:58580869-58580949 9.7e-06 9_[+2]_63 chr12:74931692-74931772 9.7e-06 6_[+2]_66 chr1:35659070-35659150 2.1e-05 53_[+2]_19 chr1:12315424-12315504 2.1e-05 47_[+2]_25 chr1:109290455-109290535 3e-05 70_[+2]_2 chr7:105988706-105988786 3e-05 48_[+2]_24 chr22:39715450-39715530 4.1e-05 44_[+2]_28 chr9:140222785-140222865 6.4e-05 49_[+2]_23 chr1:186327001-186327081 6.4e-05 22_[+2]_50 chr15:72767475-72767555 7.6e-05 41_[+2]_31 chr17:58433795-58433875 7.6e-05 8_[+2]_64 chr6:88411759-88411839 8.9e-05 29_[+2]_43 chr16:70557832-70557912 8.9e-05 4_[+2]_68 chr18:6683665-6683745 8.9e-05 24_[+2]_48 chr17:73776453-73776533 9.9e-05 42_[+2]_30 chr1:19567882-19567962 0.00011 8_[+2]_64 chr7:120767147-120767227 0.00011 50_[+2]_22 chr2:152294141-152294221 0.00012 63_[+2]_9 chr1:19459402-19459482 0.00012 7_[+2]_65 chr6:170849860-170849940 0.00015 16_[+2]_56 chr7:120672088-120672168 0.00015 36_[+2]_36 chrX:16901254-16901334 0.00018 28_[+2]_44 chr7:138759857-138759937 0.00018 13_[+2]_59 chr17:79568646-79568726 0.0002 20_[+2]_52 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AAAACARA MEME-2 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF AAAACARA width=8 seqs=27 chr1:235336611-235336691 ( 70) AAAACAAA 1 chrX:41192963-41193043 ( 8) AAAACAAA 1 chr22:41318842-41318922 ( 32) AAAACAAA 1 chr16:58580869-58580949 ( 10) AAAACAAA 1 chr12:74931692-74931772 ( 7) AAAACAAA 1 chr1:35659070-35659150 ( 54) AAAACAGA 1 chr1:12315424-12315504 ( 48) AAAACAGA 1 chr1:109290455-109290535 ( 71) AAAACAAT 1 chr7:105988706-105988786 ( 49) AAAACAAT 1 chr22:39715450-39715530 ( 45) AAAGCAAA 1 chr9:140222785-140222865 ( 50) AAAACAAC 1 chr1:186327001-186327081 ( 23) AAAACAGT 1 chr15:72767475-72767555 ( 42) AAAGCAGA 1 chr17:58433795-58433875 ( 9) AAAGCAGA 1 chr6:88411759-88411839 ( 30) AAAACAGC 1 chr16:70557832-70557912 ( 5) AAAACAGC 1 chr18:6683665-6683745 ( 25) AAAACAGC 1 chr17:73776453-73776533 ( 43) AATACAAA 1 chr1:19567882-19567962 ( 9) AATACAGA 1 chr7:120767147-120767227 ( 51) AATACAGA 1 chr2:152294141-152294221 ( 64) AAAATAAA 1 chr1:19459402-19459482 ( 8) AAAATAAA 1 chr6:170849860-170849940 ( 17) AAAGCAAT 1 chr7:120672088-120672168 ( 37) AAAGCAAT 1 chrX:16901254-16901334 ( 29) TAAACAGA 1 chr7:138759857-138759937 ( 14) TAAACAGA 1 chr17:79568646-79568726 ( 21) AAAGCAGC 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AAAACARA MEME-2 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 18250 bayes= 10.594 E= 4.0e+003 200 -1140 -1140 -164 211 -1140 -1140 -1140 194 -1140 -1140 -105 175 -1140 -25 -1140 -1140 175 -1140 -164 211 -1140 -1140 -1140 116 -1140 87 -1140 144 -57 -1140 -32 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AAAACARA MEME-2 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 27 E= 4.0e+003 0.925926 0.000000 0.000000 0.074074 1.000000 0.000000 0.000000 0.000000 0.888889 0.000000 0.000000 0.111111 0.777778 0.000000 0.222222 0.000000 0.000000 0.925926 0.000000 0.074074 1.000000 0.000000 0.000000 0.000000 0.518519 0.000000 0.481481 0.000000 0.629630 0.185185 0.000000 0.185185 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AAAACARA MEME-2 regular expression -------------------------------------------------------------------------------- AAA[AG]CA[AG]A -------------------------------------------------------------------------------- Time 8.82 secs. ******************************************************************************** ******************************************************************************** MOTIF TTTTCTTT MEME-3 width = 8 sites = 2 llr = 23 E-value = 1.7e+005 ******************************************************************************** -------------------------------------------------------------------------------- Motif TTTTCTTT MEME-3 Description -------------------------------------------------------------------------------- Simplified A :::::::: pos.-specific C ::::a::: probability G :::::::: matrix T aaaa:aaa bits 2.1 **** *** 1.9 ******** 1.7 ******** 1.5 ******** Relative 1.3 ******** Entropy 1.1 ******** (16.7 bits) 0.8 ******** 0.6 ******** 0.4 ******** 0.2 ******** 0.0 -------- Multilevel TTTTCTTT consensus sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTTTCTTT MEME-3 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr1:35659070-35659150 3 9.65e-06 TC TTTTCTTT CTTGATTGTC chr17:34005893-34005973 43 9.65e-06 TCCCCAGATG TTTTCTTT TACTGTTGTG -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTTTCTTT MEME-3 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr1:35659070-35659150 9.7e-06 2_[+3]_70 chr17:34005893-34005973 9.7e-06 42_[+3]_30 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTTTCTTT MEME-3 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF TTTTCTTT width=8 seqs=2 chr1:35659070-35659150 ( 3) TTTTCTTT 1 chr17:34005893-34005973 ( 43) TTTTCTTT 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTTTCTTT MEME-3 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 18250 bayes= 13.1555 E= 1.7e+005 -765 -765 -765 211 -765 -765 -765 211 -765 -765 -765 211 -765 -765 -765 211 -765 186 -765 -765 -765 -765 -765 211 -765 -765 -765 211 -765 -765 -765 211 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTTTCTTT MEME-3 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 2 E= 1.7e+005 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTTTCTTT MEME-3 regular expression -------------------------------------------------------------------------------- TTTTCTTT -------------------------------------------------------------------------------- Time 12.57 secs. ******************************************************************************** ******************************************************************************** MOTIF YTTCTTCT MEME-4 width = 8 sites = 11 llr = 108 E-value = 6.9e+004 ******************************************************************************** -------------------------------------------------------------------------------- Motif YTTCTTCT MEME-4 Description -------------------------------------------------------------------------------- Simplified A ::::::2: pos.-specific C 4::a::6: probability G :::::::: matrix T 6aa:aa2a bits 2.1 ** ** * 1.9 ***** * 1.7 ***** * 1.5 ***** * Relative 1.3 ***** * Entropy 1.1 ****** * (14.2 bits) 0.8 ****** * 0.6 ******** 0.4 ******** 0.2 ******** 0.0 -------- Multilevel TTTCTTCT consensus C sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif YTTCTTCT MEME-4 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr6:43872760-43872840 8 1.15e-05 ctttttc tttcttct ttctttcttt chr2:217363634-217363714 22 1.15e-05 CTGTCCTTGT TTTCTTCT CCCGCACCCA chr5:72861207-72861287 57 1.15e-05 TCACTTCCGA TTTCTTCT TTCGCCTTCT chr10:62749313-62749393 15 1.15e-05 GACACTCATC TTTCTTCT CTTACCACCC chr2:153573604-153573684 56 2.52e-05 CCACTCTTAT CTTCTTCT CCTTTCGGAG chr3:184429294-184429374 34 2.52e-05 TGATGGGACT CTTCTTCT TGTCTTTCAC chr16:18843460-18843540 52 2.52e-05 CTCAATTATA CTTCTTCT GTGAATTAGA chr12:121772618-12177269 47 4.45e-05 AATGACCTAA TTTCTTTT TCACTGAACG chr3:122135117-122135197 62 4.45e-05 TCAAAAACCA TTTCTTTT TGGAAATTGT chr16:58580869-58580949 54 4.45e-05 CATTATAATC TTTCTTAT TTCACCCAGC chr2:69596031-69596111 2 6.75e-05 T CTTCTTAT CTTGCTATGC -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif YTTCTTCT MEME-4 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr6:43872760-43872840 1.1e-05 7_[+4]_65 chr2:217363634-217363714 1.1e-05 21_[+4]_51 chr5:72861207-72861287 1.1e-05 56_[+4]_16 chr10:62749313-62749393 1.1e-05 14_[+4]_58 chr2:153573604-153573684 2.5e-05 55_[+4]_17 chr3:184429294-184429374 2.5e-05 33_[+4]_39 chr16:18843460-18843540 2.5e-05 51_[+4]_21 chr12:121772618-12177269 4.4e-05 46_[+4]_26 chr3:122135117-122135197 4.4e-05 61_[+4]_11 chr16:58580869-58580949 4.4e-05 53_[+4]_19 chr2:69596031-69596111 6.7e-05 1_[+4]_71 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif YTTCTTCT MEME-4 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF YTTCTTCT width=8 seqs=11 chr6:43872760-43872840 ( 8) TTTCTTCT 1 chr2:217363634-217363714 ( 22) TTTCTTCT 1 chr5:72861207-72861287 ( 57) TTTCTTCT 1 chr10:62749313-62749393 ( 15) TTTCTTCT 1 chr2:153573604-153573684 ( 56) CTTCTTCT 1 chr3:184429294-184429374 ( 34) CTTCTTCT 1 chr16:18843460-18843540 ( 52) CTTCTTCT 1 chr12:121772618-12177269 ( 47) TTTCTTTT 1 chr3:122135117-122135197 ( 62) TTTCTTTT 1 chr16:58580869-58580949 ( 54) TTTCTTAT 1 chr2:69596031-69596111 ( 2) CTTCTTAT 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif YTTCTTCT MEME-4 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 18250 bayes= 11.7222 E= 6.9e+004 -1010 40 -1010 146 -1010 -1010 -1010 211 -1010 -1010 -1010 211 -1010 186 -1010 -1010 -1010 -1010 -1010 211 -1010 -1010 -1010 211 -35 121 -1010 -34 -1010 -1010 -1010 211 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif YTTCTTCT MEME-4 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 11 E= 6.9e+004 0.000000 0.363636 0.000000 0.636364 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.181818 0.636364 0.000000 0.181818 0.000000 0.000000 0.000000 1.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif YTTCTTCT MEME-4 regular expression -------------------------------------------------------------------------------- [TC]TTCTTCT -------------------------------------------------------------------------------- Time 16.33 secs. ******************************************************************************** ******************************************************************************** MOTIF TTGTTCTT MEME-5 width = 8 sites = 2 llr = 23 E-value = 3.0e+005 ******************************************************************************** -------------------------------------------------------------------------------- Motif TTGTTCTT MEME-5 Description -------------------------------------------------------------------------------- Simplified A :::::::: pos.-specific C :::::a:: probability G ::a::::: matrix T aa:aa:aa bits 2.1 ** ** ** 1.9 ******** 1.7 ******** 1.5 ******** Relative 1.3 ******** Entropy 1.1 ******** (16.5 bits) 0.8 ******** 0.6 ******** 0.4 ******** 0.2 ******** 0.0 -------- Multilevel TTGTTCTT consensus sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTGTTCTT MEME-5 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr12:121772618-12177269 70 1.10e-05 GAACGGCCTG TTGTTCTT AGA chr17:37683565-37683645 47 1.10e-05 AGTGGCTCAC TTGTTCTT GTTTCTCCCC -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTGTTCTT MEME-5 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr12:121772618-12177269 1.1e-05 69_[+5]_3 chr17:37683565-37683645 1.1e-05 46_[+5]_26 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTGTTCTT MEME-5 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF TTGTTCTT width=8 seqs=2 chr12:121772618-12177269 ( 70) TTGTTCTT 1 chr17:37683565-37683645 ( 47) TTGTTCTT 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTGTTCTT MEME-5 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 18250 bayes= 13.1555 E= 3.0e+005 -765 -765 -765 211 -765 -765 -765 211 -765 -765 192 -765 -765 -765 -765 211 -765 -765 -765 211 -765 186 -765 -765 -765 -765 -765 211 -765 -765 -765 211 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTGTTCTT MEME-5 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 2 E= 3.0e+005 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTGTTCTT MEME-5 regular expression -------------------------------------------------------------------------------- TTGTTCTT -------------------------------------------------------------------------------- Time 20.07 secs. ******************************************************************************** ******************************************************************************** SUMMARY OF MOTIFS ******************************************************************************** -------------------------------------------------------------------------------- Combined block diagrams: non-overlapping sites with p-value < 0.0001 -------------------------------------------------------------------------------- SEQUENCE NAME COMBINED P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr12:58129958-58130038 9.98e-01 80 chr20:56099635-56099715 9.85e-01 80 chr19:50256130-50256210 5.57e-01 80 chr20:39766829-39766909 8.59e-01 80 chr19:18433227-18433307 5.17e-01 80 chr7:120767147-120767227 4.58e-04 5_[+1(5.17e-05)]_52_[+1(7.10e-05)]_\ 7 chr1:186296674-186296754 7.77e-02 80 chr9:95046904-95046984 9.93e-01 80 chr1:19567882-19567962 4.56e-01 80 chr17:37683565-37683645 9.30e-04 46_[+5(1.10e-05)]_26 chr17:58433795-58433875 8.04e-02 8_[+2(7.63e-05)]_64 chr2:85839486-85839566 5.78e-01 80 chr1:193030728-193030808 2.86e-03 37_[+1(1.62e-05)]_35 chr7:135306139-135306219 9.99e-04 [+5(7.08e-05)]_72 chr1:12332382-12332462 9.69e-04 57_[+3(3.51e-05)]_15 chr1:19459402-19459482 1.94e-03 32_[+1(5.17e-05)]_10_[+1(8.11e-06)]_\ 22 chr10:62749313-62749393 3.99e-03 14_[+4(1.15e-05)]_58 chr7:2404501-2404581 1.08e-01 80 chr17:35596785-35596865 6.70e-02 80 chr10:131908904-13190898 1.00e+00 80 chr2:183844791-183844871 2.11e-04 6_[+1(6.14e-05)]_66 chr11:118359356-11835943 2.61e-02 11_[+3(3.51e-05)]_61 chr21:47442670-47442750 8.81e-01 80 chr5:54640440-54640520 9.41e-05 25_[+1(6.14e-05)]_31_[+5(4.00e-05)]_\ 8 chr5:72861207-72861287 2.70e-04 56_[+4(1.15e-05)]_16 chr6:168227315-168227395 1.00e+00 80 chr11:47788213-47788293 8.46e-01 80 chrX:70503637-70503717 8.94e-01 80 chr19:36630463-36630543 9.63e-01 80 chr22:22404992-22405072 2.73e-02 63_[+1(8.11e-06)]_9 chr1:28535516-28535596 9.92e-01 80 chr7:156969140-156969220 3.11e-01 80 chr12:74931692-74931772 5.59e-02 6_[+2(9.65e-06)]_66 chr5:159826972-159827052 1.00e+00 80 chr11:94226760-94226840 9.43e-01 80 chr9:135545630-135545710 9.14e-01 80 chr22:32149647-32149727 5.24e-01 80 chr16:18843460-18843540 5.91e-03 51_[+4(2.52e-05)]_21 chr20:56784898-56784978 6.64e-01 80 chr2:176045733-176045813 9.25e-01 80 chr12:112480680-11248076 1.25e-02 4_[+1(3.24e-05)]_68 chr16:74657285-74657365 3.42e-01 80 chr1:21503224-21503304 9.82e-01 80 chr19:36248300-36248380 8.36e-01 80 chr14:45553437-45553517 4.63e-01 80 chr1:6583925-6584005 6.04e-04 5_[+1(5.17e-05)]_67 chr1:182816418-182816498 5.44e-01 80 chr17:36858848-36858928 1.21e-01 80 chr16:58580869-58580949 2.88e-06 4_[+2(9.65e-06)]_2_[+2(9.65e-06)]_\ 31_[+4(4.45e-05)]_19 chr16:30547398-30547478 4.36e-01 80 chr1:154193763-154193843 1.00e+00 80 chr19:48894062-48894142 1.00e+00 80 chr15:59430606-59430686 8.04e-01 80 chr7:138759857-138759937 4.76e-01 80 chr12:124103215-12410329 8.23e-01 80 chr17:34901679-34901759 9.72e-01 80 chr17:57232270-57232350 9.97e-01 80 chr17:45266401-45266481 8.66e-01 80 chrX:46988814-46988894 3.02e-01 80 chr1:46767571-46767651 1.00e+00 80 chr2:160615396-160615476 6.91e-01 80 chr1:47694826-47694906 9.38e-01 80 chr17:34005893-34005973 5.41e-04 42_[+3(9.65e-06)]_30 chr7:106788108-106788188 6.00e-07 62_[+3(9.65e-06)]_10 chr7:120672088-120672168 1.58e-03 80 chr1:200528139-200528219 3.92e-01 80 chr12:64799386-64799466 5.62e-03 14_[+5(4.00e-05)]_58 chr1:186327001-186327081 1.63e-03 22_[+2(6.38e-05)]_50 chr1:185139567-185139647 1.83e-01 80 chr1:91966498-91966578 3.77e-01 80 chr11:118661229-11866130 1.00e+00 80 chr5:415612-415692 1.00e+00 80 chr19:40336318-40336398 7.98e-01 80 chr22:21295079-21295159 5.26e-02 80 chr21:39485480-39485560 8.59e-01 80 chr6:31665316-31665396 2.34e-01 80 chr21:47706709-47706789 1.09e-02 80 chr15:44719856-44719936 6.40e-01 80 chr22:20925944-20926024 9.86e-01 80 chr11:116147332-11614741 4.91e-01 80 chr3:122135117-122135197 2.58e-04 61_[+4(4.45e-05)]_11 chr22:42017652-42017732 9.87e-01 80 chr11:17297841-17297921 1.00e+00 80 chr12:56040178-56040258 1.00e+00 80 chr6:153304585-153304665 1.31e-01 80 chr12:121772618-12177269 2.65e-05 46_[+4(4.45e-05)]_15_[+5(1.10e-05)]_\ 3 chr6:42629503-42629583 2.57e-04 19_[+1(4.21e-05)]_53 chr4:124399-124479 9.98e-01 80 chr3:186502079-186502159 9.04e-01 80 chr17:41150711-41150791 1.24e-03 19_[+1(2.43e-05)]_53 chr11:62341166-62341246 9.84e-01 80 chr1:249120875-249120955 9.58e-01 80 chr12:31226873-31226953 9.99e-01 80 chr6:147223750-147223830 6.94e-02 80 chr20:25388336-25388416 9.35e-01 80 chr10:75910508-75910588 9.94e-01 80 chr3:184429294-184429374 4.86e-04 33_[+4(2.52e-05)]_39 chr17:48823152-48823232 8.84e-01 80 chr10:127408316-12740839 9.38e-01 80 chr15:44061955-44062035 2.28e-01 80 chr18:6683665-6683745 1.77e-01 24_[+2(8.94e-05)]_48 chrX:118925415-118925495 6.52e-01 80 chr22:41318842-41318922 3.12e-04 31_[+2(9.65e-06)]_41 chr1:62902665-62902745 9.98e-01 80 chr16:30662532-30662612 9.97e-01 80 chr13:41635744-41635824 1.00e+00 80 chr18:9024604-9024684 2.31e-01 80 chr1:35545142-35545222 9.96e-01 80 chrX:71496932-71497012 1.00e+00 80 chrX:48937430-48937510 1.00e+00 80 chr1:144918068-144918148 1.84e-01 80 chr7:120761623-120761703 5.14e-03 41_[+1(8.95e-05)]_31 chr17:35596998-35597078 8.65e-01 80 chr14:69864896-69864976 9.33e-01 80 chr11:57103369-57103449 1.00e+00 80 chr10:28822996-28823076 9.91e-01 80 chr14:90798008-90798088 9.28e-01 80 chr9:37422945-37423025 7.15e-01 80 chr12:53846312-53846392 9.98e-01 80 chr11:4116273-4116353 1.00e+00 80 chr19:49588217-49588297 2.38e-01 80 chr17:80231421-80231501 1.00e+00 80 chr1:46713920-46714000 2.46e-01 80 chr1:16694256-16694336 5.08e-01 80 chr6:135760065-135760145 6.11e-03 7_[+1(8.11e-06)]_65 chr14:23564817-23564897 9.83e-01 80 chr3:47879336-47879416 9.54e-01 80 chr19:18263646-18263726 1.00e+00 80 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-------------------------------------------------------------------------------- ******************************************************************************** ******************************************************************************** Stopped because requested number of motifs (5) found. ******************************************************************************** CPU: c22n05.farnam.hpc.yale.internal ********************************************************************************