******************************************************************************** MEME - Motif discovery tool ******************************************************************************** MEME version 5.3.3 (Release date: Sun Feb 7 15:39:52 2021 -0800) For further information on how to interpret these results please access https://meme-suite.org/meme. To get a copy of the MEME Suite software please access https://meme-suite.org. ******************************************************************************** ******************************************************************************** REFERENCE ******************************************************************************** If you use this program in your research, please cite: Timothy L. Bailey and Charles Elkan, "Fitting a mixture model by expectation maximization to discover motifs in biopolymers", Proceedings of the Second International Conference on Intelligent Systems for Molecular Biology, pp. 28-36, AAAI Press, Menlo Park, California, 1994. ******************************************************************************** ******************************************************************************** TRAINING SET ******************************************************************************** PRIMARY SEQUENCES= ../result/final_prediction/K562/fasta/RankLinear0.6_40/ZNF830.fasta CONTROL SEQUENCES= --none-- ALPHABET= ACGT Sequence name Weight Length Sequence name Weight Length ------------- ------ ------ ------------- ------ ------ chr11:34380131-34380211 1.0000 80 chr2:158454017-158454097 1.0000 80 chrX:117480562-117480642 1.0000 80 chr9:129485489-129485569 1.0000 80 chr16:81772620-81772700 1.0000 80 chr19:13209268-13209348 1.0000 80 chr19:12946118-12946198 1.0000 80 chr12:50100553-50100633 1.0000 80 chr22:36783086-36783166 1.0000 80 chr19:5827572-5827652 1.0000 80 chr6:170101535-170101615 1.0000 80 chr14:35514950-35515030 1.0000 80 chr17:4958980-4959060 1.0000 80 chr17:34091676-34091756 1.0000 80 chr20:23285409-23285489 1.0000 80 chr20:3154605-3154685 1.0000 80 chr3:152880552-152880632 1.0000 80 chr14:73712834-73712914 1.0000 80 chr21:34143422-34143502 1.0000 80 chr14:24665630-24665710 1.0000 80 chr19:42891403-42891483 1.0000 80 chr6:82462104-82462184 1.0000 80 chr12:111284728-11128480 1.0000 80 chr3:169755668-169755748 1.0000 80 chr19:43967268-43967348 1.0000 80 chr17:42030445-42030525 1.0000 80 chr5:10548959-10549039 1.0000 80 chr9:115096424-115096504 1.0000 80 chr4:170534035-170534115 1.0000 80 chr6:105400993-105401073 1.0000 80 chr17:48350304-48350384 1.0000 80 chr22:49779889-49779969 1.0000 80 chr14:94639901-94639981 1.0000 80 chr20:44935994-44936074 1.0000 80 chr8:94929231-94929311 1.0000 80 chr4:87857053-87857133 1.0000 80 chr8:2481012-2481092 1.0000 80 chr3:50264533-50264613 1.0000 80 chr14:64761201-64761281 1.0000 80 chr13:114894318-11489439 1.0000 80 chr14:103799613-10379969 1.0000 80 chr3:50310750-50310830 1.0000 80 chr4:129208403-129208483 1.0000 80 chr2:131090239-131090319 1.0000 80 chr19:44037907-44037987 1.0000 80 chrX:84499396-84499476 1.0000 80 chr6:26550867-26550947 1.0000 80 chr19:12936584-12936664 1.0000 80 chr20:44640303-44640383 1.0000 80 chr15:85525779-85525859 1.0000 80 chr19:45578956-45579036 1.0000 80 chr11:100998683-10099876 1.0000 80 chr17:34900380-34900460 1.0000 80 chr15:43212158-43212238 1.0000 80 chr17:654971-655051 1.0000 80 chr7:44621342-44621422 1.0000 80 chr11:64216723-64216803 1.0000 80 chr16:2478814-2478894 1.0000 80 chr6:87837607-87837687 1.0000 80 chr11:407561-407641 1.0000 80 chr12:110562443-11056252 1.0000 80 chr14:91883026-91883106 1.0000 80 chr7:66206131-66206211 1.0000 80 chr8:94753598-94753678 1.0000 80 chr1:23810226-23810306 1.0000 80 chr17:8093085-8093165 1.0000 80 chr2:37552406-37552486 1.0000 80 chr19:10445892-10445972 1.0000 80 chr14:75078966-75079046 1.0000 80 chr12:99039770-99039850 1.0000 80 chr6:27342721-27342801 1.0000 80 chr8:37558005-37558085 1.0000 80 chr12:51785283-51785363 1.0000 80 chr20:10654800-10654880 1.0000 80 chr12:42984245-42984325 1.0000 80 chr5:180631151-180631231 1.0000 80 chr7:8009534-8009614 1.0000 80 chrX:52987542-52987622 1.0000 80 chr1:109843408-109843488 1.0000 80 chr2:71453973-71454053 1.0000 80 chr7:92157351-92157431 1.0000 80 chr13:41240411-41240491 1.0000 80 chr2:16795717-16795797 1.0000 80 chr1:16543692-16543772 1.0000 80 chr12:28128368-28128448 1.0000 80 chr6:130257767-130257847 1.0000 80 chr10:93170526-93170606 1.0000 80 chr2:203879678-203879758 1.0000 80 chr12:56473101-56473181 1.0000 80 chr6:41691367-41691447 1.0000 80 chr7:16439354-16439434 1.0000 80 chr10:103990925-10399100 1.0000 80 chr17:40440982-40441062 1.0000 80 chr19:5805762-5805842 1.0000 80 chr6:125284297-125284377 1.0000 80 chr19:15666974-15667054 1.0000 80 chr11:65101555-65101635 1.0000 80 chr9:97137534-97137614 1.0000 80 chr3:195163184-195163264 1.0000 80 chrX:3630959-3631039 1.0000 80 chr12:99039118-99039198 1.0000 80 chr10:96162069-96162149 1.0000 80 chr7:23145990-23146070 1.0000 80 chr11:68608111-68608191 1.0000 80 chr19:47163029-47163109 1.0000 80 chr12:107487046-10748712 1.0000 80 chr2:172421198-172421278 1.0000 80 chr1:212769328-212769408 1.0000 80 chr13:111162278-11116235 1.0000 80 chr14:93799784-93799864 1.0000 80 chr6:28956341-28956421 1.0000 80 chr19:17531180-17531260 1.0000 80 chr3:155571176-155571256 1.0000 80 chr16:29823675-29823755 1.0000 80 chr6:170102872-170102952 1.0000 80 chr2:24715063-24715143 1.0000 80 chr11:62368557-62368637 1.0000 80 chr17:65989208-65989288 1.0000 80 chr2:111879760-111879840 1.0000 80 chr8:99261634-99261714 1.0000 80 chr15:23932341-23932421 1.0000 80 chr7:66147446-66147526 1.0000 80 chr6:157803229-157803309 1.0000 80 chr19:29218102-29218182 1.0000 80 chr5:42908833-42908913 1.0000 80 chr6:168226118-168226198 1.0000 80 chr3:195270602-195270682 1.0000 80 chr5:122372859-122372939 1.0000 80 chr20:35169939-35170019 1.0000 80 chr4:141073124-141073204 1.0000 80 chr14:21492776-21492856 1.0000 80 chr4:48486176-48486256 1.0000 80 chr22:44319782-44319862 1.0000 80 chr14:39735560-39735640 1.0000 80 chr6:99283685-99283765 1.0000 80 chr21:33672742-33672822 1.0000 80 chr17:44344761-44344841 1.0000 80 chr14:89882879-89882959 1.0000 80 chr1:113497192-113497272 1.0000 80 chr6:142136231-142136311 1.0000 80 chr20:307436-307516 1.0000 80 chr14:24899581-24899661 1.0000 80 chr16:81812461-81812541 1.0000 80 chr16:1463831-1463911 1.0000 80 chr3:42543464-42543544 1.0000 80 chr10:119811-119891 1.0000 80 chr7:128865516-128865596 1.0000 80 chr11:73020153-73020233 1.0000 80 chr5:54522890-54522970 1.0000 80 chr19:10444528-10444608 1.0000 80 chr1:23857028-23857108 1.0000 80 chr8:127353902-127353982 1.0000 80 chr7:128865311-128865391 1.0000 80 chr20:42073780-42073860 1.0000 80 chr10:94050541-94050621 1.0000 80 chr14:93673131-93673211 1.0000 80 chr5:56110756-56110836 1.0000 80 chr1:40105542-40105622 1.0000 80 chr5:180644436-180644516 1.0000 80 chr11:72854249-72854329 1.0000 80 chr14:75593181-75593261 1.0000 80 chr2:202898071-202898151 1.0000 80 chr7:35839979-35840059 1.0000 80 chr1:116710290-116710370 1.0000 80 chr22:17518260-17518340 1.0000 80 chr11:72852880-72852960 1.0000 80 chr20:32700514-32700594 1.0000 80 chr17:79259270-79259350 1.0000 80 chr6:157009154-157009234 1.0000 80 chr19:7702323-7702403 1.0000 80 chr3:150959879-150959959 1.0000 80 chr14:50065320-50065400 1.0000 80 chr6:28953350-28953430 1.0000 80 chr2:172907520-172907600 1.0000 80 chr1:94884433-94884513 1.0000 80 chr17:58041718-58041798 1.0000 80 chr5:180596821-180596901 1.0000 80 chr22:29138152-29138232 1.0000 80 chr6:144417322-144417402 1.0000 80 chr22:29999739-29999819 1.0000 80 chr2:174397682-174397762 1.0000 80 chr15:85525980-85526060 1.0000 80 chr9:97811182-97811262 1.0000 80 chr14:31028428-31028508 1.0000 80 chr1:112281691-112281771 1.0000 80 chr1:180991496-180991576 1.0000 80 chr8:132916970-132917050 1.0000 80 chr2:239149014-239149094 1.0000 80 chr20:33297178-33297258 1.0000 80 chr1:40781276-40781356 1.0000 80 chr9:125703428-125703508 1.0000 80 chr19:57702744-57702824 1.0000 80 chr19:50528338-50528418 1.0000 80 chr19:58858741-58858821 1.0000 80 chr12:16064650-16064730 1.0000 80 chr1:173444167-173444247 1.0000 80 chr14:96969211-96969291 1.0000 80 chr9:115514070-115514150 1.0000 80 chr1:149878304-149878384 1.0000 80 chr12:76478994-76479074 1.0000 80 chr19:41119468-41119548 1.0000 80 chr4:183727812-183727892 1.0000 80 chr1:154910049-154910129 1.0000 80 chr3:121264856-121264936 1.0000 80 chr4:151873675-151873755 1.0000 80 chr17:48046564-48046644 1.0000 80 chr17:40574997-40575077 1.0000 80 chr2:37550948-37551028 1.0000 80 chr1:22029352-22029432 1.0000 80 chr6:26522690-26522770 1.0000 80 chr1:117910425-117910505 1.0000 80 chr14:74769709-74769789 1.0000 80 chr7:6098268-6098348 1.0000 80 chr6:110012343-110012423 1.0000 80 chr16:82045042-82045122 1.0000 80 chr8:38644983-38645063 1.0000 80 chr11:3602091-3602171 1.0000 80 chr13:37633509-37633589 1.0000 80 chr11:57227984-57228064 1.0000 80 chr9:114245284-114245364 1.0000 80 chr14:64195113-64195193 1.0000 80 chr2:64455734-64455814 1.0000 80 chr1:211687626-211687706 1.0000 80 chr19:16606707-16606787 1.0000 80 chrX:154254858-154254938 1.0000 80 chr14:75229853-75229933 1.0000 80 chr12:52445314-52445394 1.0000 80 chr19:36486510-36486590 1.0000 80 chr7:22767150-22767230 1.0000 80 chr11:65222378-65222458 1.0000 80 chr1:40098508-40098588 1.0000 80 chr2:197035145-197035225 1.0000 80 chr22:22652146-22652226 1.0000 80 chr2:69534384-69534464 1.0000 80 chr7:75947673-75947753 1.0000 80 chr17:73201162-73201242 1.0000 80 chr20:3220363-3220443 1.0000 80 chr2:101768246-101768326 1.0000 80 chr8:19615245-19615325 1.0000 80 chr15:67253780-67253860 1.0000 80 chr2:219524280-219524360 1.0000 80 chr7:103630439-103630519 1.0000 80 chr16:50776489-50776569 1.0000 80 chr22:43506276-43506356 1.0000 80 chr6:32053773-32053853 1.0000 80 chr12:121838523-12183860 1.0000 80 chr15:85144543-85144623 1.0000 80 chr4:3294272-3294352 1.0000 80 chr12:49371737-49371817 1.0000 80 chr19:8408032-8408112 1.0000 80 ******************************************************************************** ******************************************************************************** COMMAND LINE SUMMARY ******************************************************************************** This information can also be useful in the event you wish to report a problem with the MEME software. command: meme -oc ../result/final_prediction/K562/inference_raw/MEME/RankLinear0.6_40_ZNF830/ -dna -nmotifs 5 -w 8 -maxsize 250000 -nostatus ../result/final_prediction/K562/fasta/RankLinear0.6_40/ZNF830.fasta model: mod= zoops nmotifs= 5 evt= inf objective function: em= E-value of product of p-values starts= E-value of product of p-values strands: + width: minw= 8 maxw= 8 nsites: minsites= 2 maxsites= 250 wnsites= 0.8 theta: spmap= uni spfuzz= 0.5 em: prior= dirichlet b= 0.01 maxiter= 50 distance= 1e-05 trim: wg= 11 ws= 1 endgaps= yes data: n= 20000 N= 250 sample: seed= 0 hsfrac= 0 searchsize= 20000 norand= no csites= 1000 Letter frequencies in dataset: A 0.198 C 0.306 G 0.3 T 0.196 Background letter frequencies (from file dataset with add-one prior applied): A 0.198 C 0.306 G 0.3 T 0.196 Background model order: 0 ******************************************************************************** ******************************************************************************** MOTIF CCGACGGS MEME-1 width = 8 sites = 33 llr = 278 E-value = 4.5e-002 ******************************************************************************** -------------------------------------------------------------------------------- Motif CCGACGGS MEME-1 Description -------------------------------------------------------------------------------- Simplified A :1:7:::: pos.-specific C a9::a::5 probability G ::a::aa5 matrix T :::3:::: bits 2.3 2.1 1.9 1.6 * * *** Relative 1.4 ******* Entropy 1.2 ******* (12.2 bits) 0.9 ******* 0.7 ******** 0.5 ******** 0.2 ******** 0.0 -------- Multilevel CCGACGGG consensus T C sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CCGACGGS MEME-1 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr9:97811182-97811262 62 4.60e-05 GCGCGTTCAC CCGACGGG ACCTCGCCTG chr17:79259270-79259350 32 4.60e-05 GCATGCGTTC CCGACGGG GCGGCCGAAT chr10:119811-119891 31 4.60e-05 TACAAACAGC CCGACGGG AAACGCGGCC chr6:142136231-142136311 22 4.60e-05 ctgcgctttt ccgacggg cttaaaaaac chr2:111879760-111879840 29 4.60e-05 GGGTCTGCCC CCGACGGG CCAAAACAAG chr11:65101555-65101635 46 4.60e-05 CACTGGAGCC CCGACGGG CGGCATCCCT chr10:103990925-10399100 1 4.60e-05 . CCGACGGG GCTTCCAGCC chr4:3294272-3294352 42 9.28e-05 TCCTCGGACA CCGACGGC GAAGGACAGA chr16:50776489-50776569 22 9.28e-05 CTGGCGGGCC CCGACGGC CACGGTTGGC chr17:40574997-40575077 10 9.28e-05 AGCCGGCCC CCGACGGC TCCTCCGCTG chr19:57702744-57702824 70 9.28e-05 GGGGACGTTT CCGACGGC TCA chr9:125703428-125703508 8 9.28e-05 GTATTTT CCGACGGC CCCTGCGGGG chr11:72852880-72852960 68 9.28e-05 TCAATCCTCC CCGACGGC AGCGT chr5:54522890-54522970 41 9.28e-05 TGTCGAAGGC CCGAcggc cggccgcgcc chr14:21492776-21492856 52 9.28e-05 CCGTTCTCCC CCGACGGC CCGCGAAGGC chr7:66147446-66147526 59 9.28e-05 CGGCCGTGCC CCGACGGC CTGACCTGGA chr16:29823675-29823755 13 9.28e-05 AGTGGACCGA CCGACGGC TGACGCCGGG chr6:125284297-125284377 46 9.28e-05 TCCCTCTCCC CCGACGGC GGCAGCATCG chr6:41691367-41691447 62 9.28e-05 GAACTGCGCC CCGACGGC ACAGTCCCAC chr8:37558005-37558085 36 9.28e-05 CGCACTAGCC CCGACGGC ACCTTGGTTC chr20:44640303-44640383 9 9.28e-05 CGGTCGCT CCGACGGC TACCGCTGGT chr8:132916970-132917050 70 1.38e-04 GTCCGTATCG CCGTCGGG GCG chr1:112281691-112281771 67 1.38e-04 GACCAGGTGC CCGTCGGG GCGGAG chr16:1463831-1463911 22 1.38e-04 TTACTCGTCG CCGTCGGG GCACACGCCG chr17:65989208-65989288 26 1.38e-04 GAAGAAGAAG CCGTCGGG GGTGAGGTAC chr7:23145990-23146070 35 1.38e-04 CTGGCTTTCG CCGTCGGG TATCGGTTGT chr17:654971-655051 72 1.38e-04 GGAAATGAGG CCGTCGGG G chr17:42030445-42030525 56 1.38e-04 GCGGTCCTCG CCGTCGGG GAAGAACGTT chr16:81772620-81772700 69 1.38e-04 GCTGGGGCCG CCGTCGGG CCTT chr6:28956341-28956421 8 1.85e-04 TAGAGTT CCGTCGGC CAAAACCACT chr6:157803229-157803309 2 2.14e-04 G CAGACGGG CGTCTTCTAC chr17:34900380-34900460 13 2.14e-04 AGCCCCGAAT CAGACGGG CTTGACTCGC chr1:149878304-149878384 70 2.45e-04 TACTGTTTAT CAGACGGC TGT -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CCGACGGS MEME-1 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr9:97811182-97811262 4.6e-05 61_[+1]_11 chr17:79259270-79259350 4.6e-05 31_[+1]_41 chr10:119811-119891 4.6e-05 30_[+1]_42 chr6:142136231-142136311 4.6e-05 21_[+1]_51 chr2:111879760-111879840 4.6e-05 28_[+1]_44 chr11:65101555-65101635 4.6e-05 45_[+1]_27 chr10:103990925-10399100 4.6e-05 [+1]_72 chr4:3294272-3294352 9.3e-05 41_[+1]_31 chr16:50776489-50776569 9.3e-05 21_[+1]_51 chr17:40574997-40575077 9.3e-05 9_[+1]_63 chr19:57702744-57702824 9.3e-05 69_[+1]_3 chr9:125703428-125703508 9.3e-05 7_[+1]_65 chr11:72852880-72852960 9.3e-05 67_[+1]_5 chr5:54522890-54522970 9.3e-05 40_[+1]_32 chr14:21492776-21492856 9.3e-05 51_[+1]_21 chr7:66147446-66147526 9.3e-05 58_[+1]_14 chr16:29823675-29823755 9.3e-05 12_[+1]_60 chr6:125284297-125284377 9.3e-05 45_[+1]_27 chr6:41691367-41691447 9.3e-05 61_[+1]_11 chr8:37558005-37558085 9.3e-05 35_[+1]_37 chr20:44640303-44640383 9.3e-05 8_[+1]_64 chr8:132916970-132917050 0.00014 69_[+1]_3 chr1:112281691-112281771 0.00014 66_[+1]_6 chr16:1463831-1463911 0.00014 21_[+1]_51 chr17:65989208-65989288 0.00014 25_[+1]_47 chr7:23145990-23146070 0.00014 34_[+1]_38 chr17:654971-655051 0.00014 71_[+1]_1 chr17:42030445-42030525 0.00014 55_[+1]_17 chr16:81772620-81772700 0.00014 68_[+1]_4 chr6:28956341-28956421 0.00018 7_[+1]_65 chr6:157803229-157803309 0.00021 1_[+1]_71 chr17:34900380-34900460 0.00021 12_[+1]_60 chr1:149878304-149878384 0.00024 69_[+1]_3 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CCGACGGS MEME-1 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF CCGACGGS width=8 seqs=33 chr9:97811182-97811262 ( 62) CCGACGGG 1 chr17:79259270-79259350 ( 32) CCGACGGG 1 chr10:119811-119891 ( 31) CCGACGGG 1 chr6:142136231-142136311 ( 22) CCGACGGG 1 chr2:111879760-111879840 ( 29) CCGACGGG 1 chr11:65101555-65101635 ( 46) CCGACGGG 1 chr10:103990925-10399100 ( 1) CCGACGGG 1 chr4:3294272-3294352 ( 42) CCGACGGC 1 chr16:50776489-50776569 ( 22) CCGACGGC 1 chr17:40574997-40575077 ( 10) CCGACGGC 1 chr19:57702744-57702824 ( 70) CCGACGGC 1 chr9:125703428-125703508 ( 8) CCGACGGC 1 chr11:72852880-72852960 ( 68) CCGACGGC 1 chr5:54522890-54522970 ( 41) CCGACGGC 1 chr14:21492776-21492856 ( 52) CCGACGGC 1 chr7:66147446-66147526 ( 59) CCGACGGC 1 chr16:29823675-29823755 ( 13) CCGACGGC 1 chr6:125284297-125284377 ( 46) CCGACGGC 1 chr6:41691367-41691447 ( 62) CCGACGGC 1 chr8:37558005-37558085 ( 36) CCGACGGC 1 chr20:44640303-44640383 ( 9) CCGACGGC 1 chr8:132916970-132917050 ( 70) CCGTCGGG 1 chr1:112281691-112281771 ( 67) CCGTCGGG 1 chr16:1463831-1463911 ( 22) CCGTCGGG 1 chr17:65989208-65989288 ( 26) CCGTCGGG 1 chr7:23145990-23146070 ( 35) CCGTCGGG 1 chr17:654971-655051 ( 72) CCGTCGGG 1 chr17:42030445-42030525 ( 56) CCGTCGGG 1 chr16:81772620-81772700 ( 69) CCGTCGGG 1 chr6:28956341-28956421 ( 8) CCGTCGGC 1 chr6:157803229-157803309 ( 2) CAGACGGG 1 chr17:34900380-34900460 ( 13) CAGACGGG 1 chr1:149878304-149878384 ( 70) CAGACGGC 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CCGACGGS MEME-1 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 18250 bayes= 8.29803 E= 4.5e-002 -1169 171 -1169 -1169 -112 157 -1169 -1169 -1169 -1169 174 -1169 188 -1169 -1169 47 -1169 171 -1169 -1169 -1169 -1169 174 -1169 -1169 -1169 174 -1169 -1169 66 78 -1169 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CCGACGGS MEME-1 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 33 E= 4.5e-002 0.000000 1.000000 0.000000 0.000000 0.090909 0.909091 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.727273 0.000000 0.000000 0.272727 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.484848 0.515152 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CCGACGGS MEME-1 regular expression -------------------------------------------------------------------------------- CCG[AT]CGG[GC] -------------------------------------------------------------------------------- Time 5.06 secs. ******************************************************************************** ******************************************************************************** MOTIF TTTTAAAA MEME-2 width = 8 sites = 21 llr = 189 E-value = 1.7e+001 ******************************************************************************** -------------------------------------------------------------------------------- Motif TTTTAAAA MEME-2 Description -------------------------------------------------------------------------------- Simplified A ::1:5a99 pos.-specific C :::1:::: probability G 2::12::1 matrix T 8a982:1: bits 2.3 * * 2.1 * * 1.9 * ** 1.6 *** *** Relative 1.4 *** *** Entropy 1.2 **** *** (13.0 bits) 0.9 **** *** 0.7 **** *** 0.5 ******** 0.2 ******** 0.0 -------- Multilevel TTTTAAAA consensus T sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTTTAAAA MEME-2 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr2:197035145-197035225 32 2.27e-06 AGTATTACGA TTTTAAAA ACGTATTTTC chr6:144417322-144417402 6 2.27e-06 TCGCG TTTTAAAA GTGATCTGGG chr11:68608111-68608191 8 4.51e-06 TTTTCTT TTTTTAAA GTAAGATCGG chr8:38644983-38645063 46 7.95e-06 GTTCCCTCCA TTTTGAAA GGGAAAAAGG chr14:24665630-24665710 38 7.95e-06 TGGCAGATTA TTTTGAAA AAGTTTACCC chr2:101768246-101768326 36 1.14e-05 AGTGCGCTGG GTTTAAAA TAGCAACAAC chr4:141073124-141073204 31 1.14e-05 GTGCACGCAA GTTTAAAA GGAAAAAAGG chr7:92157351-92157431 7 1.72e-05 GAATAT TTATAAAA ACAGTGGTAG chr6:26522690-26522770 48 1.94e-05 CACCCCAACC TTTTAATA GAAAACATTT chr12:16064650-16064730 70 1.94e-05 TTTCTCCTCC TTTTAATA GAA chr6:170101535-170101615 57 2.98e-05 CTACTGAATC TTTTAAAG AGATCTGAGT chr8:19615245-19615325 23 4.13e-05 ATGCAAAAAC TTTGTAAA TCGCACTTCG chr14:94639901-94639981 1 4.13e-05 . TTTTCAAA CACAACCAAA chr11:72854249-72854329 34 5.23e-05 gagggaagcc tttctaaa ggttacacag chr2:174397682-174397762 50 5.92e-05 ggtgcgccgg tttttaag cccgtcggaa chr8:94753598-94753678 4 5.92e-05 ATC TTCTAAAA AGCTCCTGTg chr11:65101555-65101635 4 6.80e-05 TTC TTTGGAAA CTTGTGGAGG chr17:42030445-42030525 73 6.80e-05 GGAAGAACGT TTTGGAAA chr1:113497192-113497272 8 7.36e-05 TTTTTCC TTTTTAAT CTGTTTAAGG chr6:27342721-27342801 62 9.30e-05 ACAGACGCAG GTATAAAA GAGAGCCTCC chr14:91883026-91883106 73 1.18e-04 GCATAATTTG GTTCAAAA -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTTTAAAA MEME-2 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr2:197035145-197035225 2.3e-06 31_[+2]_41 chr6:144417322-144417402 2.3e-06 5_[+2]_67 chr11:68608111-68608191 4.5e-06 7_[+2]_65 chr8:38644983-38645063 8e-06 45_[+2]_27 chr14:24665630-24665710 8e-06 37_[+2]_35 chr2:101768246-101768326 1.1e-05 35_[+2]_37 chr4:141073124-141073204 1.1e-05 30_[+2]_42 chr7:92157351-92157431 1.7e-05 6_[+2]_66 chr6:26522690-26522770 1.9e-05 47_[+2]_25 chr12:16064650-16064730 1.9e-05 69_[+2]_3 chr6:170101535-170101615 3e-05 56_[+2]_16 chr8:19615245-19615325 4.1e-05 22_[+2]_50 chr14:94639901-94639981 4.1e-05 [+2]_72 chr11:72854249-72854329 5.2e-05 33_[+2]_39 chr2:174397682-174397762 5.9e-05 49_[+2]_23 chr8:94753598-94753678 5.9e-05 3_[+2]_69 chr11:65101555-65101635 6.8e-05 3_[+2]_69 chr17:42030445-42030525 6.8e-05 72_[+2] chr1:113497192-113497272 7.4e-05 7_[+2]_65 chr6:27342721-27342801 9.3e-05 61_[+2]_11 chr14:91883026-91883106 0.00012 72_[+2] -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTTTAAAA MEME-2 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF TTTTAAAA width=8 seqs=21 chr2:197035145-197035225 ( 32) TTTTAAAA 1 chr6:144417322-144417402 ( 6) TTTTAAAA 1 chr11:68608111-68608191 ( 8) TTTTTAAA 1 chr8:38644983-38645063 ( 46) TTTTGAAA 1 chr14:24665630-24665710 ( 38) TTTTGAAA 1 chr2:101768246-101768326 ( 36) GTTTAAAA 1 chr4:141073124-141073204 ( 31) GTTTAAAA 1 chr7:92157351-92157431 ( 7) TTATAAAA 1 chr6:26522690-26522770 ( 48) TTTTAATA 1 chr12:16064650-16064730 ( 70) TTTTAATA 1 chr6:170101535-170101615 ( 57) TTTTAAAG 1 chr8:19615245-19615325 ( 23) TTTGTAAA 1 chr14:94639901-94639981 ( 1) TTTTCAAA 1 chr11:72854249-72854329 ( 34) TTTCTAAA 1 chr2:174397682-174397762 ( 50) TTTTTAAG 1 chr8:94753598-94753678 ( 4) TTCTAAAA 1 chr11:65101555-65101635 ( 4) TTTGGAAA 1 chr17:42030445-42030525 ( 73) TTTGGAAA 1 chr1:113497192-113497272 ( 8) TTTTTAAT 1 chr6:27342721-27342801 ( 62) GTATAAAA 1 chr14:91883026-91883106 ( 73) GTTCAAAA 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTTTAAAA MEME-2 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 18250 bayes= 10.7488 E= 1.7e+001 -1104 -1104 -65 204 -1104 -1104 -1104 235 -105 -268 -1104 213 -1104 -168 -107 196 141 -268 -65 28 234 -1104 -1104 -1104 220 -1104 -1104 -104 212 -1104 -165 -204 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTTTAAAA MEME-2 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 21 E= 1.7e+001 0.000000 0.000000 0.190476 0.809524 0.000000 0.000000 0.000000 1.000000 0.095238 0.047619 0.000000 0.857143 0.000000 0.095238 0.142857 0.761905 0.523810 0.047619 0.190476 0.238095 1.000000 0.000000 0.000000 0.000000 0.904762 0.000000 0.000000 0.095238 0.857143 0.000000 0.095238 0.047619 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTTTAAAA MEME-2 regular expression -------------------------------------------------------------------------------- TTTT[AT]AAA -------------------------------------------------------------------------------- Time 8.87 secs. ******************************************************************************** ******************************************************************************** MOTIF TTTATTTT MEME-3 width = 8 sites = 2 llr = 26 E-value = 2.6e+003 ******************************************************************************** -------------------------------------------------------------------------------- Motif TTTATTTT MEME-3 Description -------------------------------------------------------------------------------- Simplified A :::a:::: pos.-specific C :::::::: probability G :::::::: matrix T aaa:aaaa bits 2.3 ******** 2.1 ******** 1.9 ******** 1.6 ******** Relative 1.4 ******** Entropy 1.2 ******** (18.8 bits) 0.9 ******** 0.7 ******** 0.5 ******** 0.2 ******** 0.0 -------- Multilevel TTTATTTT consensus sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTTATTTT MEME-3 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chrX:154254858-154254938 17 2.20e-06 CTCAGCCGTC TTTATTTT CAGTGAGTCA chr4:170534035-170534115 55 2.20e-06 AAGGGACTTT TTTATTTT ACATGAAAGC -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTTATTTT MEME-3 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrX:154254858-154254938 2.2e-06 16_[+3]_56 chr4:170534035-170534115 2.2e-06 54_[+3]_18 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTTATTTT MEME-3 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF TTTATTTT width=8 seqs=2 chrX:154254858-154254938 ( 17) TTTATTTT 1 chr4:170534035-170534115 ( 55) TTTATTTT 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTTATTTT MEME-3 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 18250 bayes= 13.1555 E= 2.6e+003 -765 -765 -765 234 -765 -765 -765 234 -765 -765 -765 234 233 -765 -765 -765 -765 -765 -765 234 -765 -765 -765 234 -765 -765 -765 234 -765 -765 -765 234 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTTATTTT MEME-3 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 2 E= 2.6e+003 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTTATTTT MEME-3 regular expression -------------------------------------------------------------------------------- TTTATTTT -------------------------------------------------------------------------------- Time 12.63 secs. ******************************************************************************** ******************************************************************************** MOTIF AAAACATT MEME-4 width = 8 sites = 4 llr = 48 E-value = 1.0e+004 ******************************************************************************** -------------------------------------------------------------------------------- Motif AAAACATT MEME-4 Description -------------------------------------------------------------------------------- Simplified A aaaa:a:: pos.-specific C ::::8::: probability G :::::::: matrix T ::::3:aa bits 2.3 **** *** 2.1 **** *** 1.9 **** *** 1.6 **** *** Relative 1.4 **** *** Entropy 1.2 **** *** (17.5 bits) 0.9 ******** 0.7 ******** 0.5 ******** 0.2 ******** 0.0 -------- Multilevel AAAACATT consensus T sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AAAACATT MEME-4 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr6:26522690-26522770 57 3.58e-06 CTTTTAATAG AAAACATT TGTCACATCT chr14:96969211-96969291 65 3.58e-06 ACCCGAAAAC AAAACATT GCCTGGTG chr14:35514950-35515030 24 3.58e-06 AGACACAGAT AAAACATT CCTTACATTT chrX:154254858-154254938 40 5.87e-06 AGTCATAGGT AAAATATT CTTCACCAGG -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AAAACATT MEME-4 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr6:26522690-26522770 3.6e-06 56_[+4]_16 chr14:96969211-96969291 3.6e-06 64_[+4]_8 chr14:35514950-35515030 3.6e-06 23_[+4]_49 chrX:154254858-154254938 5.9e-06 39_[+4]_33 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AAAACATT MEME-4 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF AAAACATT width=8 seqs=4 chr6:26522690-26522770 ( 57) AAAACATT 1 chr14:96969211-96969291 ( 65) AAAACATT 1 chr14:35514950-35515030 ( 24) AAAACATT 1 chrX:154254858-154254938 ( 40) AAAATATT 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AAAACATT MEME-4 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 18250 bayes= 12.1553 E= 1.0e+004 234 -865 -865 -865 234 -865 -865 -865 234 -865 -865 -865 234 -865 -865 -865 -865 129 -865 35 234 -865 -865 -865 -865 -865 -865 235 -865 -865 -865 235 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AAAACATT MEME-4 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 4 E= 1.0e+004 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.750000 0.000000 0.250000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AAAACATT MEME-4 regular expression -------------------------------------------------------------------------------- AAAA[CT]ATT -------------------------------------------------------------------------------- Time 16.40 secs. ******************************************************************************** ******************************************************************************** MOTIF TTTTCTTA MEME-5 width = 8 sites = 2 llr = 25 E-value = 1.0e+004 ******************************************************************************** -------------------------------------------------------------------------------- Motif TTTTCTTA MEME-5 Description -------------------------------------------------------------------------------- Simplified A :::::::a pos.-specific C ::::a::: probability G :::::::: matrix T aaaa:aa: bits 2.3 **** *** 2.1 **** *** 1.9 **** *** 1.6 ******** Relative 1.4 ******** Entropy 1.2 ******** (18.1 bits) 0.9 ******** 0.7 ******** 0.5 ******** 0.2 ******** 0.0 -------- Multilevel TTTTCTTA consensus sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTTTCTTA MEME-5 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr2:197035145-197035225 45 3.43e-06 TAAAAACGTA TTTTCTTA ATTCCAATTT chr9:115514070-115514150 68 3.43e-06 AGGCTCCAGA TTTTCTTA GAGCA -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTTTCTTA MEME-5 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr2:197035145-197035225 3.4e-06 44_[+5]_28 chr9:115514070-115514150 3.4e-06 67_[+5]_5 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTTTCTTA MEME-5 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF TTTTCTTA width=8 seqs=2 chr2:197035145-197035225 ( 45) TTTTCTTA 1 chr9:115514070-115514150 ( 68) TTTTCTTA 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTTTCTTA MEME-5 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 18250 bayes= 13.1555 E= 1.0e+004 -765 -765 -765 234 -765 -765 -765 234 -765 -765 -765 234 -765 -765 -765 234 -765 170 -765 -765 -765 -765 -765 234 -765 -765 -765 234 233 -765 -765 -765 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTTTCTTA MEME-5 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 2 E= 1.0e+004 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 1.000000 0.000000 0.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTTTCTTA MEME-5 regular expression -------------------------------------------------------------------------------- TTTTCTTA -------------------------------------------------------------------------------- Time 20.08 secs. ******************************************************************************** ******************************************************************************** SUMMARY OF MOTIFS ******************************************************************************** -------------------------------------------------------------------------------- Combined block diagrams: non-overlapping sites with p-value < 0.0001 -------------------------------------------------------------------------------- SEQUENCE NAME COMBINED P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr11:34380131-34380211 1.23e-02 80 chr2:158454017-158454097 2.85e-01 39_[+1(9.28e-05)]_24_[+1(9.28e-05)]_\ 1 chrX:117480562-117480642 9.85e-01 80 chr9:129485489-129485569 3.65e-01 80 chr16:81772620-81772700 4.67e-01 80 chr19:13209268-13209348 4.84e-01 80 chr19:12946118-12946198 9.26e-01 80 chr12:50100553-50100633 7.61e-01 80 chr22:36783086-36783166 1.00e+00 80 chr19:5827572-5827652 9.98e-01 80 chr6:170101535-170101615 2.78e-02 56_[+2(2.98e-05)]_16 chr14:35514950-35515030 4.08e-03 23_[+4(3.58e-06)]_49 chr17:4958980-4959060 8.26e-01 80 chr17:34091676-34091756 9.48e-01 80 chr20:23285409-23285489 1.97e-01 2_[+1(9.28e-05)]_11_[+1(9.28e-05)]_\ 11_[+1(9.28e-05)]_32 chr20:3154605-3154685 9.75e-01 80 chr3:152880552-152880632 8.77e-01 80 chr14:73712834-73712914 9.98e-01 80 chr21:34143422-34143502 5.77e-01 80 chr14:24665630-24665710 5.20e-05 37_[+2(7.95e-06)]_27_[+2(2.98e-05)] chr19:42891403-42891483 1.00e+00 80 chr6:82462104-82462184 9.57e-01 80 chr12:111284728-11128480 9.99e-01 80 chr3:169755668-169755748 2.56e-01 80 chr19:43967268-43967348 9.92e-01 80 chr17:42030445-42030525 2.69e-03 72_[+2(6.80e-05)] chr5:10548959-10549039 6.54e-01 80 chr9:115096424-115096504 9.93e-01 80 chr4:170534035-170534115 7.80e-06 54_[+3(2.20e-06)]_18 chr6:105400993-105401073 9.14e-01 80 chr17:48350304-48350384 3.04e-01 80 chr22:49779889-49779969 4.49e-02 80 chr14:94639901-94639981 5.85e-06 [+2(4.13e-05)]_42_[+5(1.12e-05)]_22 chr20:44935994-44936074 9.96e-01 80 chr8:94929231-94929311 7.60e-01 80 chr4:87857053-87857133 5.27e-01 80 chr8:2481012-2481092 1.00e+00 80 chr3:50264533-50264613 9.31e-01 80 chr14:64761201-64761281 9.69e-01 80 chr13:114894318-11489439 8.71e-01 80 chr14:103799613-10379969 9.47e-01 80 chr3:50310750-50310830 2.35e-01 80 chr4:129208403-129208483 5.08e-01 80 chr2:131090239-131090319 7.02e-01 80 chr19:44037907-44037987 9.66e-01 80 chrX:84499396-84499476 7.74e-01 80 chr6:26550867-26550947 9.82e-01 80 chr19:12936584-12936664 9.54e-01 80 chr20:44640303-44640383 3.75e-01 8_[+1(9.28e-05)]_64 chr15:85525779-85525859 3.92e-01 80 chr19:45578956-45579036 5.89e-01 80 chr11:100998683-10099876 6.33e-01 80 chr17:34900380-34900460 4.01e-02 80 chr15:43212158-43212238 1.09e-01 80 chr17:654971-655051 8.98e-02 80 chr7:44621342-44621422 3.96e-01 80 chr11:64216723-64216803 1.00e+00 80 chr16:2478814-2478894 9.83e-01 80 chr6:87837607-87837687 9.19e-01 80 chr11:407561-407641 8.56e-01 80 chr12:110562443-11056252 9.44e-01 80 chr14:91883026-91883106 3.10e-02 80 chr7:66206131-66206211 9.72e-01 80 chr8:94753598-94753678 3.69e-02 3_[+2(5.92e-05)]_69 chr1:23810226-23810306 3.30e-01 80 chr17:8093085-8093165 7.62e-01 80 chr2:37552406-37552486 7.43e-01 80 chr19:10445892-10445972 9.85e-01 80 chr14:75078966-75079046 9.97e-01 80 chr12:99039770-99039850 3.85e-02 80 chr6:27342721-27342801 9.74e-02 61_[+2(9.30e-05)]_11 chr8:37558005-37558085 2.25e-02 35_[+1(9.28e-05)]_37 chr12:51785283-51785363 6.43e-01 80 chr20:10654800-10654880 8.74e-01 80 chr12:42984245-42984325 8.47e-01 80 chr5:180631151-180631231 9.61e-01 80 chr7:8009534-8009614 9.06e-01 80 chrX:52987542-52987622 9.98e-01 80 chr1:109843408-109843488 5.14e-01 80 chr2:71453973-71454053 9.98e-01 80 chr7:92157351-92157431 6.59e-04 6_[+2(1.72e-05)]_66 chr13:41240411-41240491 6.58e-01 80 chr2:16795717-16795797 2.33e-01 80 chr1:16543692-16543772 9.84e-01 80 chr12:28128368-28128448 9.65e-01 80 chr6:130257767-130257847 5.74e-01 80 chr10:93170526-93170606 1.20e-02 59_[+3(7.43e-05)]_13 chr2:203879678-203879758 7.85e-01 80 chr12:56473101-56473181 9.41e-01 80 chr6:41691367-41691447 2.57e-01 61_[+1(9.28e-05)]_11 chr7:16439354-16439434 7.20e-01 80 chr10:103990925-10399100 2.30e-01 [+1(4.60e-05)]_72 chr17:40440982-40441062 4.71e-01 80 chr19:5805762-5805842 9.40e-01 80 chr6:125284297-125284377 2.35e-01 45_[+1(9.28e-05)]_27 chr19:15666974-15667054 6.70e-01 80 chr11:65101555-65101635 9.86e-03 3_[+2(6.80e-05)]_34_[+1(4.60e-05)]_\ 27 chr9:97137534-97137614 2.54e-01 80 chr3:195163184-195163264 9.72e-01 80 chrX:3630959-3631039 9.97e-01 80 chr12:99039118-99039198 5.58e-01 80 chr10:96162069-96162149 8.74e-01 80 chr7:23145990-23146070 1.50e-01 80 chr11:68608111-68608191 6.06e-06 7_[+2(4.51e-06)]_65 chr19:47163029-47163109 9.22e-01 80 chr12:107487046-10748712 5.92e-01 80 chr2:172421198-172421278 4.11e-01 80 chr1:212769328-212769408 6.48e-01 80 chr13:111162278-11116235 9.34e-01 80 chr14:93799784-93799864 7.88e-01 80 chr6:28956341-28956421 1.76e-01 80 chr19:17531180-17531260 9.21e-01 80 chr3:155571176-155571256 6.22e-01 80 chr16:29823675-29823755 4.01e-01 12_[+1(9.28e-05)]_60 chr6:170102872-170102952 9.37e-01 80 chr2:24715063-24715143 9.55e-01 80 chr11:62368557-62368637 4.78e-01 80 chr17:65989208-65989288 8.93e-02 80 chr2:111879760-111879840 8.13e-02 28_[+1(4.60e-05)]_44 chr8:99261634-99261714 1.56e-01 80 chr15:23932341-23932421 8.84e-02 80 chr7:66147446-66147526 4.13e-01 58_[+1(9.28e-05)]_14 chr6:157803229-157803309 1.88e-01 80 chr19:29218102-29218182 9.99e-01 80 chr5:42908833-42908913 4.59e-01 80 chr6:168226118-168226198 4.30e-02 80 chr3:195270602-195270682 2.44e-01 80 chr5:122372859-122372939 5.41e-01 80 chr20:35169939-35170019 9.97e-01 80 chr4:141073124-141073204 7.36e-02 30_[+2(1.14e-05)]_42 chr14:21492776-21492856 1.22e-01 51_[+1(9.28e-05)]_21 chr4:48486176-48486256 7.98e-01 80 chr22:44319782-44319862 9.96e-01 80 chr14:39735560-39735640 1.81e-01 80 chr6:99283685-99283765 3.44e-01 80 chr21:33672742-33672822 5.59e-01 80 chr17:44344761-44344841 1.70e-01 80 chr14:89882879-89882959 9.97e-01 80 chr1:113497192-113497272 6.44e-03 7_[+2(7.36e-05)]_65 chr6:142136231-142136311 8.92e-03 21_[+1(4.60e-05)]_51 chr20:307436-307516 9.72e-01 80 chr14:24899581-24899661 8.38e-01 80 chr16:81812461-81812541 7.71e-01 80 chr16:1463831-1463911 2.52e-01 80 chr3:42543464-42543544 9.84e-01 80 chr10:119811-119891 2.31e-01 30_[+1(4.60e-05)]_42 chr7:128865516-128865596 9.22e-01 80 chr11:73020153-73020233 9.21e-01 80 chr5:54522890-54522970 9.08e-02 40_[+1(9.28e-05)]_32 chr19:10444528-10444608 7.83e-01 80 chr1:23857028-23857108 9.22e-01 80 chr8:127353902-127353982 7.79e-01 80 chr7:128865311-128865391 6.24e-01 80 chr20:42073780-42073860 5.84e-01 80 chr10:94050541-94050621 6.34e-01 80 chr14:93673131-93673211 9.99e-01 80 chr5:56110756-56110836 8.86e-01 80 chr1:40105542-40105622 1.00e+00 80 chr5:180644436-180644516 5.67e-01 80 chr11:72854249-72854329 4.41e-02 33_[+2(5.23e-05)]_39 chr14:75593181-75593261 5.38e-01 80 chr2:202898071-202898151 8.07e-01 80 chr7:35839979-35840059 9.05e-01 80 chr1:116710290-116710370 9.99e-01 80 chr22:17518260-17518340 9.70e-01 80 chr11:72852880-72852960 1.58e-01 67_[+1(9.28e-05)]_5 chr20:32700514-32700594 2.51e-01 80 chr17:79259270-79259350 2.31e-01 31_[+1(4.60e-05)]_41 chr6:157009154-157009234 3.19e-03 58_[+3(7.43e-05)]_14 chr19:7702323-7702403 9.98e-01 80 chr3:150959879-150959959 9.07e-01 80 chr14:50065320-50065400 7.61e-01 80 chr6:28953350-28953430 8.19e-02 80 chr2:172907520-172907600 8.63e-01 80 chr1:94884433-94884513 9.65e-01 80 chr17:58041718-58041798 1.47e-02 80 chr5:180596821-180596901 9.88e-01 80 chr22:29138152-29138232 6.72e-01 80 chr6:144417322-144417402 1.87e-02 5_[+2(2.27e-06)]_67 chr22:29999739-29999819 9.65e-01 80 chr2:174397682-174397762 3.38e-02 49_[+2(5.92e-05)]_23 chr15:85525980-85526060 2.76e-01 80 chr9:97811182-97811262 1.55e-01 61_[+1(4.60e-05)]_11 chr14:31028428-31028508 9.70e-01 80 chr1:112281691-112281771 4.17e-01 80 chr1:180991496-180991576 2.36e-01 80 chr8:132916970-132917050 4.99e-01 80 chr2:239149014-239149094 1.38e-01 80 chr20:33297178-33297258 9.41e-01 80 chr1:40781276-40781356 2.88e-01 80 chr9:125703428-125703508 8.57e-02 7_[+1(9.28e-05)]_65 chr19:57702744-57702824 1.82e-01 69_[+1(9.28e-05)]_3 chr19:50528338-50528418 8.07e-01 80 chr19:58858741-58858821 9.55e-01 80 chr12:16064650-16064730 4.78e-04 69_[+2(1.94e-05)]_3 chr1:173444167-173444247 3.13e-01 80 chr14:96969211-96969291 5.89e-02 64_[+4(3.58e-06)]_8 chr9:115514070-115514150 1.88e-02 67_[+5(3.43e-06)]_5 chr1:149878304-149878384 1.39e-01 80 chr12:76478994-76479074 4.74e-01 80 chr19:41119468-41119548 5.20e-01 80 chr4:183727812-183727892 9.70e-01 80 chr1:154910049-154910129 3.33e-01 80 chr3:121264856-121264936 9.68e-01 80 chr4:151873675-151873755 2.05e-01 80 chr17:48046564-48046644 9.06e-01 80 chr17:40574997-40575077 4.13e-01 9_[+1(9.28e-05)]_63 chr2:37550948-37551028 6.77e-02 80 chr1:22029352-22029432 9.81e-01 80 chr6:26522690-26522770 3.17e-05 47_[+2(1.94e-05)]_1_[+4(3.58e-06)]_\ 16 chr1:117910425-117910505 7.66e-01 80 chr14:74769709-74769789 1.20e-01 80 chr7:6098268-6098348 6.68e-01 80 chr6:110012343-110012423 3.02e-01 80 chr16:82045042-82045122 9.43e-01 80 chr8:38644983-38645063 4.93e-03 45_[+2(7.95e-06)]_27 chr11:3602091-3602171 9.37e-01 80 chr13:37633509-37633589 9.59e-01 80 chr11:57227984-57228064 9.77e-01 80 chr9:114245284-114245364 9.45e-01 80 chr14:64195113-64195193 9.38e-01 80 chr2:64455734-64455814 3.42e-02 80 chr1:211687626-211687706 6.27e-01 80 chr19:16606707-16606787 1.00e+00 80 chrX:154254858-154254938 8.31e-06 16_[+3(2.20e-06)]_15_[+4(5.87e-06)]_\ 33 chr14:75229853-75229933 2.95e-02 80 chr12:52445314-52445394 3.94e-02 80 chr19:36486510-36486590 6.72e-01 80 chr7:22767150-22767230 3.24e-01 80 chr11:65222378-65222458 9.96e-01 80 chr1:40098508-40098588 9.85e-01 80 chr2:197035145-197035225 4.00e-06 31_[+2(2.27e-06)]_5_[+5(3.43e-06)]_\ 28 chr22:22652146-22652226 8.74e-01 80 chr2:69534384-69534464 9.80e-01 80 chr7:75947673-75947753 6.64e-01 80 chr17:73201162-73201242 8.61e-01 80 chr20:3220363-3220443 9.85e-01 80 chr2:101768246-101768326 9.34e-03 35_[+2(1.14e-05)]_37 chr8:19615245-19615325 3.68e-03 22_[+2(4.13e-05)]_50 chr15:67253780-67253860 2.50e-01 80 chr2:219524280-219524360 9.98e-01 80 chr7:103630439-103630519 6.90e-01 80 chr16:50776489-50776569 3.53e-01 21_[+1(9.28e-05)]_51 chr22:43506276-43506356 4.95e-01 80 chr6:32053773-32053853 9.99e-01 80 chr12:121838523-12183860 8.69e-01 80 chr15:85144543-85144623 9.21e-01 80 chr4:3294272-3294352 4.38e-01 41_[+1(9.28e-05)]_31 chr12:49371737-49371817 6.17e-01 80 chr19:8408032-8408112 9.60e-01 80 -------------------------------------------------------------------------------- ******************************************************************************** ******************************************************************************** Stopped because requested number of motifs (5) found. ******************************************************************************** CPU: c22n09.farnam.hpc.yale.internal ********************************************************************************