******************************************************************************** MEME - Motif discovery tool ******************************************************************************** MEME version 5.3.3 (Release date: Sun Feb 7 15:39:52 2021 -0800) For further information on how to interpret these results please access https://meme-suite.org/meme. To get a copy of the MEME Suite software please access https://meme-suite.org. ******************************************************************************** ******************************************************************************** REFERENCE ******************************************************************************** If you use this program in your research, please cite: Timothy L. Bailey and Charles Elkan, "Fitting a mixture model by expectation maximization to discover motifs in biopolymers", Proceedings of the Second International Conference on Intelligent Systems for Molecular Biology, pp. 28-36, AAAI Press, Menlo Park, California, 1994. ******************************************************************************** ******************************************************************************** TRAINING SET ******************************************************************************** PRIMARY SEQUENCES= ../result/final_prediction/K562/fasta/RankLinear0.6_40/ZNF83.fasta CONTROL SEQUENCES= --none-- ALPHABET= ACGT Sequence name Weight Length Sequence name Weight Length ------------- ------ ------ ------------- ------ ------ chr1:61658916-61658996 1.0000 80 chr17:14235143-14235223 1.0000 80 chr12:56140207-56140287 1.0000 80 chr8:131762003-131762083 1.0000 80 chr4:89835759-89835839 1.0000 80 chr21:45166235-45166315 1.0000 80 chr6:27255833-27255913 1.0000 80 chr5:126015317-126015397 1.0000 80 chr3:186306560-186306640 1.0000 80 chr15:93419351-93419431 1.0000 80 chr19:49639500-49639580 1.0000 80 chr10:30723859-30723939 1.0000 80 chr9:4618858-4618938 1.0000 80 chr4:105372930-105373010 1.0000 80 chr22:39266327-39266407 1.0000 80 chr11:112149771-11214985 1.0000 80 chr6:150581350-150581430 1.0000 80 chr3:139153097-139153177 1.0000 80 chr16:15766824-15766904 1.0000 80 chr14:23030663-23030743 1.0000 80 chr14:75949663-75949743 1.0000 80 chr22:41105972-41106052 1.0000 80 chr6:31553903-31553983 1.0000 80 chr7:148413813-148413893 1.0000 80 chr7:136642903-136642983 1.0000 80 chr16:58485889-58485969 1.0000 80 chr8:39797537-39797617 1.0000 80 chr16:85169915-85169995 1.0000 80 chr6:141151192-141151272 1.0000 80 chr1:33684587-33684667 1.0000 80 chr6:13095429-13095509 1.0000 80 chr9:99204259-99204339 1.0000 80 chr3:171770357-171770437 1.0000 80 chr3:141013385-141013465 1.0000 80 chr20:43223446-43223526 1.0000 80 chr6:134679490-134679570 1.0000 80 chr16:81742573-81742653 1.0000 80 chr6:82980692-82980772 1.0000 80 chr1:120510819-120510899 1.0000 80 chr17:16945144-16945224 1.0000 80 chr6:6919033-6919113 1.0000 80 chr6:126240136-126240216 1.0000 80 chrX:150267690-150267770 1.0000 80 chr19:3369638-3369718 1.0000 80 chrX:65225409-65225489 1.0000 80 chr13:42833910-42833990 1.0000 80 chr6:20470363-20470443 1.0000 80 chr11:19977343-19977423 1.0000 80 chr7:157127673-157127753 1.0000 80 chr6:27879874-27879954 1.0000 80 chr7:10819881-10819961 1.0000 80 chr1:160254422-160254502 1.0000 80 chr12:123998514-12399859 1.0000 80 chr6:56580769-56580849 1.0000 80 chr1:174202000-174202080 1.0000 80 chr19:17331061-17331141 1.0000 80 chr10:80792484-80792564 1.0000 80 chr19:35917674-35917754 1.0000 80 chr4:159677496-159677576 1.0000 80 chr11:112149979-11215005 1.0000 80 chr20:18265614-18265694 1.0000 80 chr10:72338123-72338203 1.0000 80 chr6:82980892-82980972 1.0000 80 chr13:110368287-11036836 1.0000 80 chr18:20616933-20617013 1.0000 80 chr6:134864194-134864274 1.0000 80 chr5:112267241-112267321 1.0000 80 chr12:76225446-76225526 1.0000 80 chr19:50658904-50658984 1.0000 80 chr1:246743307-246743387 1.0000 80 chr6:17702249-17702329 1.0000 80 chr4:141926615-141926695 1.0000 80 chrX:49023106-49023186 1.0000 80 chr15:96021118-96021198 1.0000 80 chr14:99941723-99941803 1.0000 80 chr10:77796233-77796313 1.0000 80 chr2:129112338-129112418 1.0000 80 chr1:181069055-181069135 1.0000 80 chr1:201482293-201482373 1.0000 80 chr3:136422377-136422457 1.0000 80 chr3:185220856-185220936 1.0000 80 chr17:1215672-1215752 1.0000 80 chr1:236959359-236959439 1.0000 80 chr6:21404924-21405004 1.0000 80 chr17:36833491-36833571 1.0000 80 chr1:33659058-33659138 1.0000 80 chr1:8434997-8435077 1.0000 80 chr21:44748293-44748373 1.0000 80 chr12:131648835-13164891 1.0000 80 chr11:75484802-75484882 1.0000 80 chr21:30590290-30590370 1.0000 80 chr1:39339292-39339372 1.0000 80 chr6:138303540-138303620 1.0000 80 chr8:62074858-62074938 1.0000 80 chr6:152000392-152000472 1.0000 80 chr5:126363082-126363162 1.0000 80 chr1:165835362-165835442 1.0000 80 chr19:6652928-6653008 1.0000 80 chr17:56757267-56757347 1.0000 80 chr7:5572608-5572688 1.0000 80 chr1:151357102-151357182 1.0000 80 chr18:12247041-12247121 1.0000 80 chr12:95009835-95009915 1.0000 80 chr1:160881451-160881531 1.0000 80 chr10:51593936-51594016 1.0000 80 chr2:114030696-114030776 1.0000 80 chr9:99204460-99204540 1.0000 80 chr1:116332910-116332990 1.0000 80 chr16:12367063-12367143 1.0000 80 chr1:120402348-120402428 1.0000 80 chr10:3936374-3936454 1.0000 80 chr12:56967291-56967371 1.0000 80 chr12:127568111-12756819 1.0000 80 chr9:129708101-129708181 1.0000 80 chr14:88459615-88459695 1.0000 80 chr8:129289704-129289784 1.0000 80 chr2:12402529-12402609 1.0000 80 chr19:50877964-50878044 1.0000 80 chr10:25406930-25407010 1.0000 80 chr19:35759327-35759407 1.0000 80 chr17:56357-56437 1.0000 80 chr2:96855076-96855156 1.0000 80 chr6:161815012-161815092 1.0000 80 chr1:145059006-145059086 1.0000 80 chr7:86633923-86634003 1.0000 80 chr2:74759491-74759571 1.0000 80 chr19:42052809-42052889 1.0000 80 chr16:28550207-28550287 1.0000 80 chr17:65989806-65989886 1.0000 80 chr8:142191430-142191510 1.0000 80 chr9:117160394-117160474 1.0000 80 chr10:92681125-92681205 1.0000 80 chr4:77064-77144 1.0000 80 chr1:10754869-10754949 1.0000 80 chr17:27253163-27253243 1.0000 80 chr2:86202693-86202773 1.0000 80 chr12:123365508-12336558 1.0000 80 chr16:16092638-16092718 1.0000 80 chrX:119019972-119020052 1.0000 80 chr1:21780666-21780746 1.0000 80 chr4:1242610-1242690 1.0000 80 chr1:24836498-24836578 1.0000 80 chr12:122124721-12212480 1.0000 80 chr12:114050066-11405014 1.0000 80 chr12:120339895-12033997 1.0000 80 chr7:99532837-99532917 1.0000 80 chr20:5640418-5640498 1.0000 80 chr22:39181705-39181785 1.0000 80 chr19:47322193-47322273 1.0000 80 chr2:10091583-10091663 1.0000 80 chr19:39146992-39147072 1.0000 80 chrX:65225617-65225697 1.0000 80 chr1:32423297-32423377 1.0000 80 chr5:96077886-96077966 1.0000 80 chr6:15400306-15400386 1.0000 80 chr1:155057284-155057364 1.0000 80 chr7:128863688-128863768 1.0000 80 chr10:49638598-49638678 1.0000 80 chr11:73278320-73278400 1.0000 80 chr13:114029235-11402931 1.0000 80 chr12:1769654-1769734 1.0000 80 chr17:44344236-44344316 1.0000 80 chr2:234766582-234766662 1.0000 80 chr12:112824417-11282449 1.0000 80 chr11:13299091-13299171 1.0000 80 chr6:27248091-27248171 1.0000 80 chr7:150756612-150756692 1.0000 80 chr7:75563852-75563932 1.0000 80 chr1:168254845-168254925 1.0000 80 chr1:9884163-9884243 1.0000 80 chr19:11071621-11071701 1.0000 80 chr1:166402068-166402148 1.0000 80 chr15:99191695-99191775 1.0000 80 chr3:122920835-122920915 1.0000 80 chr1:153522551-153522631 1.0000 80 chr7:7140089-7140169 1.0000 80 chr16:75182736-75182816 1.0000 80 chr9:101558826-101558906 1.0000 80 chr4:10187546-10187626 1.0000 80 chr22:17840428-17840508 1.0000 80 chr15:90749360-90749440 1.0000 80 chr11:78128913-78128993 1.0000 80 chr12:127395340-12739542 1.0000 80 chr21:30277803-30277883 1.0000 80 chr6:24668943-24669023 1.0000 80 chr22:21410343-21410423 1.0000 80 chr1:40367551-40367631 1.0000 80 chr17:76237681-76237761 1.0000 80 chr2:128568299-128568379 1.0000 80 chr12:71144395-71144475 1.0000 80 chr6:35741260-35741340 1.0000 80 chr1:181875030-181875110 1.0000 80 chr4:48856011-48856091 1.0000 80 chr8:2170381-2170461 1.0000 80 chr15:83838011-83838091 1.0000 80 chr19:35917954-35918034 1.0000 80 chr1:85666808-85666888 1.0000 80 chrX:131029193-131029273 1.0000 80 chr11:46143053-46143133 1.0000 80 chr10:124671569-12467164 1.0000 80 chr10:4868254-4868334 1.0000 80 chr8:142402102-142402182 1.0000 80 chr19:50094705-50094785 1.0000 80 chr7:116593779-116593859 1.0000 80 chr6:69345070-69345150 1.0000 80 chr7:135569285-135569365 1.0000 80 chr2:159926196-159926276 1.0000 80 chr5:150114258-150114338 1.0000 80 chr1:156968708-156968788 1.0000 80 chr17:61072539-61072619 1.0000 80 chr18:5296137-5296217 1.0000 80 chr19:44293360-44293440 1.0000 80 chr8:8871033-8871113 1.0000 80 chr1:202913610-202913690 1.0000 80 chr22:31741990-31742070 1.0000 80 chr8:124629018-124629098 1.0000 80 chr16:48419303-48419383 1.0000 80 chr11:221059-221139 1.0000 80 chr7:130134453-130134533 1.0000 80 chr22:22378266-22378346 1.0000 80 chr8:74659179-74659259 1.0000 80 chr9:37937027-37937107 1.0000 80 chr8:110411571-110411651 1.0000 80 chr17:67099985-67100065 1.0000 80 chr19:4400579-4400659 1.0000 80 chr4:55252515-55252595 1.0000 80 chr7:130134655-130134735 1.0000 80 chr11:4006375-4006455 1.0000 80 chr7:127299181-127299261 1.0000 80 chr5:88179056-88179136 1.0000 80 chr16:71501835-71501915 1.0000 80 chr11:925770-925850 1.0000 80 chr3:14361200-14361280 1.0000 80 chr10:134247986-13424806 1.0000 80 chr15:63343723-63343803 1.0000 80 chr8:142011385-142011465 1.0000 80 chr5:96377277-96377357 1.0000 80 chr10:98592493-98592573 1.0000 80 chr20:10415800-10415880 1.0000 80 chr19:7627875-7627955 1.0000 80 chr17:77784013-77784093 1.0000 80 chr5:39077158-39077238 1.0000 80 chr2:181845152-181845232 1.0000 80 chr6:150597497-150597577 1.0000 80 chr12:105629335-10562941 1.0000 80 chr19:42463538-42463618 1.0000 80 chr18:74534415-74534495 1.0000 80 chr11:76535448-76535528 1.0000 80 chr19:14779061-14779141 1.0000 80 chr21:31070568-31070648 1.0000 80 ******************************************************************************** ******************************************************************************** COMMAND LINE SUMMARY ******************************************************************************** This information can also be useful in the event you wish to report a problem with the MEME software. command: meme -oc ../result/final_prediction/K562/inference_raw/MEME/RankLinear0.6_40_ZNF83/ -dna -nmotifs 5 -w 8 -maxsize 250000 -nostatus ../result/final_prediction/K562/fasta/RankLinear0.6_40/ZNF83.fasta model: mod= zoops nmotifs= 5 evt= inf objective function: em= E-value of product of p-values starts= E-value of product of p-values strands: + width: minw= 8 maxw= 8 nsites: minsites= 2 maxsites= 250 wnsites= 0.8 theta: spmap= uni spfuzz= 0.5 em: prior= dirichlet b= 0.01 maxiter= 50 distance= 1e-05 trim: wg= 11 ws= 1 endgaps= yes data: n= 20000 N= 250 sample: seed= 0 hsfrac= 0 searchsize= 20000 norand= no csites= 1000 Letter frequencies in dataset: A 0.247 C 0.256 G 0.249 T 0.248 Background letter frequencies (from file dataset with add-one prior applied): A 0.247 C 0.256 G 0.25 T 0.248 Background model order: 0 ******************************************************************************** ******************************************************************************** MOTIF GARARRAA MEME-1 width = 8 sites = 95 llr = 773 E-value = 2.1e-067 ******************************************************************************** -------------------------------------------------------------------------------- Motif GARARRAA MEME-1 Description -------------------------------------------------------------------------------- Simplified A 1a39669a pos.-specific C :::::::: probability G 9:71341: matrix T :::::::: bits 2.0 * * 1.8 * * 1.6 * * ** 1.4 ** * ** Relative 1.2 ** * ** Entropy 1.0 **** *** (11.7 bits) 0.8 ******** 0.6 ******** 0.4 ******** 0.2 ******** 0.0 -------- Multilevel GAGAAAAA consensus A GG sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GARARRAA MEME-1 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr10:134247986-13424806 54 1.42e-05 aaggccttaa gagaaaaa gacagttgtc chr1:181875030-181875110 10 1.42e-05 gattaatag gagaaaaa gcacataatt chr10:49638598-49638678 35 1.42e-05 AGCCTGATAA GAGAAAAA GATTCCCATG chr12:123365508-12336558 60 1.42e-05 AGGCTCAAAA GAGAAAAA GGGGAAAAAT chr9:117160394-117160474 1 1.42e-05 . GAGAAAAA GCCAACGCCC chr5:126363082-126363162 27 1.42e-05 AGCTTTTAAA GAGAAAAA GGGTGCCTCA chr17:36833491-36833571 65 1.42e-05 CTCCTCATAG GAGAAAAA GAGGGACA chr14:99941723-99941803 32 1.42e-05 TTGCCAGTAA GAGAAAAA GGCAGCTCCA chr6:134864194-134864274 28 1.42e-05 ggactaacaa gagaaaaa gtgaggagga chr13:110368287-11036836 18 1.42e-05 GGTCTGCTAG GAGAAAAA GATCTTCAAT chr7:157127673-157127753 35 1.42e-05 agattcgtaa gagaaaaa gtatacaaat chr4:105372930-105373010 54 1.42e-05 agattcatag gagaaaaa ggcatacaaa chr10:30723859-30723939 69 1.42e-05 AGAATACTAG GAGAAAAA AAAA chr6:150597497-150597577 26 2.86e-05 ACTTTCTTAA GAGAAGAA ATATGAGATG chr21:30277803-30277883 33 2.86e-05 AGCCTCTAAA GAGAAGAA GCTTGTTTGC chr6:27248091-27248171 58 2.86e-05 TTTCTCCTAG GAGAAGAA GAAAATTTTT chr11:73278320-73278400 41 2.86e-05 gaaatacaaa gagaagaa ggtatggagg chr5:96077886-96077966 33 2.86e-05 TGTGCCTTCA GAGAAGAA GGCAGCAGGG chr17:1215672-1215752 28 2.86e-05 CTGAGCCAGG GAGAAGAA GGCAGCCTGG chr2:129112338-129112418 43 2.86e-05 TGCCTGGGAG GAGAAGAA GTCAGCCAGC chrX:65225409-65225489 33 2.86e-05 TTGCAGCTCA GAGAAGAA TGTTCAGAAG chr3:171770357-171770437 43 2.86e-05 AGACTGTTAA GAGAAGAA TCTCCTGGGA chr7:136642903-136642983 59 2.86e-05 gagttggtaa gagaagaa ggaatccagt chr14:23030663-23030743 44 2.86e-05 AGGCTGCTAA GAGAAGAA AACAAGAGAG chr9:4618858-4618938 32 2.86e-05 AGGCTGTCAA GAGAAGAA GCTAGAAGAA chr5:126015317-126015397 30 2.86e-05 agaatgcttg gagaagaa gcatgtgagt chr8:131762003-131762083 26 2.86e-05 AGCTTCCTTG GAGAAGAA GAACCTCTCA chr1:61658916-61658996 35 2.86e-05 AGCATAATAA GAGAAGAA GCTCTGCTAT chr1:202913610-202913690 36 4.29e-05 GGCTGGGCAA GAGAGAAA GCACACGATG chr6:15400306-15400386 49 4.29e-05 AAGAAACAAT GAGAGAAA ACAGCTTCTG chr12:122124721-12212480 58 4.29e-05 GGCTGGTTAA GAGAGAAA GGCGGGTCCT chr2:114030696-114030776 46 4.29e-05 CAACTGTGGC GAGAGAAA GTAAACACAT chr7:5572608-5572688 36 4.29e-05 AGGAGCTGAA GAGAGAAA GCAAGCAGCG chr1:39339292-39339372 24 4.29e-05 AGACTATTGC GAGAGAAA GGACCGCCGC chr15:96021118-96021198 33 4.29e-05 AGGCTGCTAA GAGAGAAA GGAACAGGAA chr4:141926615-141926695 55 4.29e-05 GGCCTGCTAA GAGAGAAA GCATTGTTTT chr10:72338123-72338203 34 4.29e-05 AGGTTGAGAG GAGAGAAA GGTAGATCCT chr11:19977343-19977423 48 4.29e-05 AGACTGATAG GAGAGAAA GCCAGAGTGC chrX:150267690-150267770 71 4.29e-05 AGAAAGACTG GAGAGAAA GA chr19:14779061-14779141 18 5.69e-05 agaagaagaa gaaaaaaa gagactctca chr2:159926196-159926276 17 5.69e-05 aaatgaatag gaaaaaaa gtcccatttt chr7:75563852-75563932 45 5.69e-05 agactgtggg gaaaaaaa ggccttgaag chr12:1769654-1769734 57 5.69e-05 AACATGTTAA GAAAAAAA ATTCACTCAC chr7:99532837-99532917 41 5.69e-05 agcttgtgca gaaaaaaa aacctatgaa chr3:185220856-185220936 2 5.69e-05 A GAAAAAAA GAAATGTCCT chr20:18265614-18265694 32 5.69e-05 ccactgttaa gaaaaaaa ggcagtcaca chr6:126240136-126240216 34 5.69e-05 GGACGATTAG GAAAAAAA GTATAAGAAG chr16:81742573-81742653 69 5.69e-05 GGCTTGTTAA GAAAAAAA GCCA chr16:85169915-85169995 57 5.69e-05 GACATATTAG GAAAAAAA GGAAGAAGAT chr16:58485889-58485969 27 5.69e-05 agattaacaa gaaaaaaa acaagcagaa chr22:39266327-39266407 29 5.69e-05 gaactatcaA GAAAAAAA GGCGTTCTGT chr6:161815012-161815092 69 7.15e-05 AATCTATCAA GAGAGGAA GTCT chr1:33659058-33659138 23 7.15e-05 tacaaagtat gagaggaa aaggattgct chr6:13095429-13095509 57 7.15e-05 TCACTCCTAA GAGAGGAA GCCCTGTAGA chr19:49639500-49639580 58 7.15e-05 GACCTGTCAA GAGAGGAA GTTGGAggcc chr17:67099985-67100065 56 8.57e-05 TGAATAAGAG GAAAAGAA GGACTTTTTT chr15:83838011-83838091 49 8.57e-05 aggcaaataa gaaaagaa gtcgcaggag chr6:35741260-35741340 49 8.57e-05 AGATGCAGAA GAAAAGAA GTGAGACGTT chr13:114029235-11402931 52 8.57e-05 CGAATGTGAG GAAAAGAA GAGCTGGGGT chr14:88459615-88459695 40 8.57e-05 GGAGTGTTGA GAAAAGAA GCAGCGAGCT chr12:56967291-56967371 5 8.57e-05 AGAA GAAAAGAA ATAGTTCCTC chr1:236959359-236959439 64 9.99e-05 CACCTACTGC GAAAGAAA GTTCAGGCG chr6:6919033-6919113 63 9.99e-05 AGCAGCTTAA GAAAGAAA GGACCATTCA chr8:39797537-39797617 63 9.99e-05 TTACTGTTAC GAAAGAAA GTTTCTAAGC chr11:76535448-76535528 69 1.14e-04 AGACTTCTAG GAAAGGAA GGGC chr1:153522551-153522631 55 1.14e-04 AGCCTCCCAA GAAAGGAA GGAAGCAATT chr17:14235143-14235223 50 1.14e-04 GGCTTCCTAG GAAAGGAA GGAGGTTCCA chr19:50094705-50094785 73 1.28e-04 GGCGGCTGCA AAGAAAAA chr19:17331061-17331141 20 1.28e-04 agattctaaa aagaaaaa GTCAGTCTTG chr6:27879874-27879954 35 1.28e-04 AGAGATTGCT AAGAAAAA AGTACATAGG chr10:51593936-51594016 64 1.57e-04 TAATGTGGCA AAGAGAAA CCAAGCTAC chr1:120510819-120510899 65 1.57e-04 AAGGACAACT AAGAGAAA ATGTCTCT chr22:41105972-41106052 48 1.57e-04 taggattgca aagagaaa tagaaagcca chr22:17840428-17840508 22 1.85e-04 ATGCTTTTTT AAAAAAAA CAAAAAACAA chr9:99204259-99204339 57 1.85e-04 gacactggag gagaaaga atacttcttt chr19:35917674-35917754 38 2.13e-04 aggctacaaa gagataaa gaagcagaat chr6:134679490-134679570 52 2.13e-04 AGACGCTTAG GAGGAAAA GTGTTTCCAA chr6:21404924-21405004 73 2.28e-04 CACTAGAGAA AAGAGGAA chr19:3369638-3369718 23 2.28e-04 TTTTACTCTT AAGAGGAA CTGTGTGGAG chr1:155057284-155057364 69 2.56e-04 TGGCCAACAG GAGAAGGA CAGA chr7:10819881-10819961 42 2.56e-04 CGCCTGTTAG GAGAAGGA CAGGGACCTC chr7:127299181-127299261 4 3.28e-04 TGG GAGATGAA TACACAACCC chr8:124629018-124629098 33 3.28e-04 ATATGCCTAA GAGGAGAA GCTGCCACCT chr1:151357102-151357182 61 3.28e-04 tgatttacag gaaaaaga gttgctgtta chr20:5640418-5640498 57 3.43e-04 AGTTCGCTTC GAGGGAAA GAATGTCAGC chr8:62074858-62074938 71 3.43e-04 ttcagggagt gagggaaa at chr21:31070568-31070648 70 3.71e-04 TTAGGAAATT GAAATAAA AAT chr17:56757267-56757347 71 3.71e-04 TGACACGACT GAAATAAA AC chr4:48856011-48856091 2 4.00e-04 G AAAAGGAA GGAAGGGAAT chr12:112824417-11282449 2 4.86e-04 G GAAGGAAA GATTTATGGC chr1:24836498-24836578 18 5.01e-04 acaatgtttt gaaaggga tctctctttt chr1:246743307-246743387 67 5.01e-04 TTCTTGTTTT GAAAGGGA ACTTCT chr1:166402068-166402148 21 5.30e-04 TGGGACTGTT AAGAAAGA ACTTTCTACT chr6:31553903-31553983 1 5.30e-04 . AAGAAAGA TGTTGTAACC chr8:110411571-110411651 73 5.58e-04 GTTGCAGTTG AAGGAAAA -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GARARRAA MEME-1 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr10:134247986-13424806 1.4e-05 53_[+1]_19 chr1:181875030-181875110 1.4e-05 9_[+1]_63 chr10:49638598-49638678 1.4e-05 34_[+1]_38 chr12:123365508-12336558 1.4e-05 59_[+1]_13 chr9:117160394-117160474 1.4e-05 [+1]_72 chr5:126363082-126363162 1.4e-05 26_[+1]_46 chr17:36833491-36833571 1.4e-05 64_[+1]_8 chr14:99941723-99941803 1.4e-05 31_[+1]_41 chr6:134864194-134864274 1.4e-05 27_[+1]_45 chr13:110368287-11036836 1.4e-05 17_[+1]_55 chr7:157127673-157127753 1.4e-05 34_[+1]_38 chr4:105372930-105373010 1.4e-05 53_[+1]_19 chr10:30723859-30723939 1.4e-05 68_[+1]_4 chr6:150597497-150597577 2.9e-05 25_[+1]_47 chr21:30277803-30277883 2.9e-05 32_[+1]_40 chr6:27248091-27248171 2.9e-05 57_[+1]_15 chr11:73278320-73278400 2.9e-05 40_[+1]_32 chr5:96077886-96077966 2.9e-05 32_[+1]_40 chr17:1215672-1215752 2.9e-05 27_[+1]_45 chr2:129112338-129112418 2.9e-05 42_[+1]_30 chrX:65225409-65225489 2.9e-05 32_[+1]_40 chr3:171770357-171770437 2.9e-05 42_[+1]_30 chr7:136642903-136642983 2.9e-05 58_[+1]_14 chr14:23030663-23030743 2.9e-05 43_[+1]_29 chr9:4618858-4618938 2.9e-05 31_[+1]_41 chr5:126015317-126015397 2.9e-05 29_[+1]_43 chr8:131762003-131762083 2.9e-05 25_[+1]_47 chr1:61658916-61658996 2.9e-05 34_[+1]_38 chr1:202913610-202913690 4.3e-05 35_[+1]_37 chr6:15400306-15400386 4.3e-05 48_[+1]_24 chr12:122124721-12212480 4.3e-05 57_[+1]_15 chr2:114030696-114030776 4.3e-05 45_[+1]_27 chr7:5572608-5572688 4.3e-05 35_[+1]_37 chr1:39339292-39339372 4.3e-05 23_[+1]_49 chr15:96021118-96021198 4.3e-05 32_[+1]_40 chr4:141926615-141926695 4.3e-05 54_[+1]_18 chr10:72338123-72338203 4.3e-05 33_[+1]_39 chr11:19977343-19977423 4.3e-05 47_[+1]_25 chrX:150267690-150267770 4.3e-05 70_[+1]_2 chr19:14779061-14779141 5.7e-05 17_[+1]_55 chr2:159926196-159926276 5.7e-05 16_[+1]_56 chr7:75563852-75563932 5.7e-05 44_[+1]_28 chr12:1769654-1769734 5.7e-05 56_[+1]_16 chr7:99532837-99532917 5.7e-05 40_[+1]_32 chr3:185220856-185220936 5.7e-05 1_[+1]_71 chr20:18265614-18265694 5.7e-05 31_[+1]_41 chr6:126240136-126240216 5.7e-05 33_[+1]_39 chr16:81742573-81742653 5.7e-05 68_[+1]_4 chr16:85169915-85169995 5.7e-05 56_[+1]_16 chr16:58485889-58485969 5.7e-05 26_[+1]_46 chr22:39266327-39266407 5.7e-05 28_[+1]_44 chr6:161815012-161815092 7.1e-05 68_[+1]_4 chr1:33659058-33659138 7.1e-05 22_[+1]_50 chr6:13095429-13095509 7.1e-05 56_[+1]_16 chr19:49639500-49639580 7.1e-05 57_[+1]_15 chr17:67099985-67100065 8.6e-05 55_[+1]_17 chr15:83838011-83838091 8.6e-05 48_[+1]_24 chr6:35741260-35741340 8.6e-05 48_[+1]_24 chr13:114029235-11402931 8.6e-05 51_[+1]_21 chr14:88459615-88459695 8.6e-05 39_[+1]_33 chr12:56967291-56967371 8.6e-05 4_[+1]_68 chr1:236959359-236959439 0.0001 63_[+1]_9 chr6:6919033-6919113 0.0001 62_[+1]_10 chr8:39797537-39797617 0.0001 62_[+1]_10 chr11:76535448-76535528 0.00011 68_[+1]_4 chr1:153522551-153522631 0.00011 54_[+1]_18 chr17:14235143-14235223 0.00011 49_[+1]_23 chr19:50094705-50094785 0.00013 72_[+1] chr19:17331061-17331141 0.00013 19_[+1]_53 chr6:27879874-27879954 0.00013 34_[+1]_38 chr10:51593936-51594016 0.00016 63_[+1]_9 chr1:120510819-120510899 0.00016 64_[+1]_8 chr22:41105972-41106052 0.00016 47_[+1]_25 chr22:17840428-17840508 0.00018 21_[+1]_51 chr9:99204259-99204339 0.00018 56_[+1]_16 chr19:35917674-35917754 0.00021 37_[+1]_35 chr6:134679490-134679570 0.00021 51_[+1]_21 chr6:21404924-21405004 0.00023 72_[+1] chr19:3369638-3369718 0.00023 22_[+1]_50 chr1:155057284-155057364 0.00026 68_[+1]_4 chr7:10819881-10819961 0.00026 41_[+1]_31 chr7:127299181-127299261 0.00033 3_[+1]_69 chr8:124629018-124629098 0.00033 32_[+1]_40 chr1:151357102-151357182 0.00033 60_[+1]_12 chr20:5640418-5640498 0.00034 56_[+1]_16 chr8:62074858-62074938 0.00034 70_[+1]_2 chr21:31070568-31070648 0.00037 69_[+1]_3 chr17:56757267-56757347 0.00037 70_[+1]_2 chr4:48856011-48856091 0.0004 1_[+1]_71 chr12:112824417-11282449 0.00049 1_[+1]_71 chr1:24836498-24836578 0.0005 17_[+1]_55 chr1:246743307-246743387 0.0005 66_[+1]_6 chr1:166402068-166402148 0.00053 20_[+1]_52 chr6:31553903-31553983 0.00053 [+1]_72 chr8:110411571-110411651 0.00056 72_[+1] -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GARARRAA MEME-1 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF GARARRAA width=8 seqs=95 chr10:134247986-13424806 ( 54) GAGAAAAA 1 chr1:181875030-181875110 ( 10) GAGAAAAA 1 chr10:49638598-49638678 ( 35) GAGAAAAA 1 chr12:123365508-12336558 ( 60) GAGAAAAA 1 chr9:117160394-117160474 ( 1) GAGAAAAA 1 chr5:126363082-126363162 ( 27) GAGAAAAA 1 chr17:36833491-36833571 ( 65) GAGAAAAA 1 chr14:99941723-99941803 ( 32) GAGAAAAA 1 chr6:134864194-134864274 ( 28) GAGAAAAA 1 chr13:110368287-11036836 ( 18) GAGAAAAA 1 chr7:157127673-157127753 ( 35) GAGAAAAA 1 chr4:105372930-105373010 ( 54) GAGAAAAA 1 chr10:30723859-30723939 ( 69) GAGAAAAA 1 chr6:150597497-150597577 ( 26) GAGAAGAA 1 chr21:30277803-30277883 ( 33) GAGAAGAA 1 chr6:27248091-27248171 ( 58) GAGAAGAA 1 chr11:73278320-73278400 ( 41) GAGAAGAA 1 chr5:96077886-96077966 ( 33) GAGAAGAA 1 chr17:1215672-1215752 ( 28) GAGAAGAA 1 chr2:129112338-129112418 ( 43) GAGAAGAA 1 chrX:65225409-65225489 ( 33) GAGAAGAA 1 chr3:171770357-171770437 ( 43) GAGAAGAA 1 chr7:136642903-136642983 ( 59) GAGAAGAA 1 chr14:23030663-23030743 ( 44) GAGAAGAA 1 chr9:4618858-4618938 ( 32) GAGAAGAA 1 chr5:126015317-126015397 ( 30) GAGAAGAA 1 chr8:131762003-131762083 ( 26) GAGAAGAA 1 chr1:61658916-61658996 ( 35) GAGAAGAA 1 chr1:202913610-202913690 ( 36) GAGAGAAA 1 chr6:15400306-15400386 ( 49) GAGAGAAA 1 chr12:122124721-12212480 ( 58) GAGAGAAA 1 chr2:114030696-114030776 ( 46) GAGAGAAA 1 chr7:5572608-5572688 ( 36) GAGAGAAA 1 chr1:39339292-39339372 ( 24) GAGAGAAA 1 chr15:96021118-96021198 ( 33) GAGAGAAA 1 chr4:141926615-141926695 ( 55) GAGAGAAA 1 chr10:72338123-72338203 ( 34) GAGAGAAA 1 chr11:19977343-19977423 ( 48) GAGAGAAA 1 chrX:150267690-150267770 ( 71) GAGAGAAA 1 chr19:14779061-14779141 ( 18) GAAAAAAA 1 chr2:159926196-159926276 ( 17) GAAAAAAA 1 chr7:75563852-75563932 ( 45) GAAAAAAA 1 chr12:1769654-1769734 ( 57) GAAAAAAA 1 chr7:99532837-99532917 ( 41) GAAAAAAA 1 chr3:185220856-185220936 ( 2) GAAAAAAA 1 chr20:18265614-18265694 ( 32) GAAAAAAA 1 chr6:126240136-126240216 ( 34) GAAAAAAA 1 chr16:81742573-81742653 ( 69) GAAAAAAA 1 chr16:85169915-85169995 ( 57) GAAAAAAA 1 chr16:58485889-58485969 ( 27) GAAAAAAA 1 chr22:39266327-39266407 ( 29) GAAAAAAA 1 chr6:161815012-161815092 ( 69) GAGAGGAA 1 chr1:33659058-33659138 ( 23) GAGAGGAA 1 chr6:13095429-13095509 ( 57) GAGAGGAA 1 chr19:49639500-49639580 ( 58) GAGAGGAA 1 chr17:67099985-67100065 ( 56) GAAAAGAA 1 chr15:83838011-83838091 ( 49) GAAAAGAA 1 chr6:35741260-35741340 ( 49) GAAAAGAA 1 chr13:114029235-11402931 ( 52) GAAAAGAA 1 chr14:88459615-88459695 ( 40) GAAAAGAA 1 chr12:56967291-56967371 ( 5) GAAAAGAA 1 chr1:236959359-236959439 ( 64) GAAAGAAA 1 chr6:6919033-6919113 ( 63) GAAAGAAA 1 chr8:39797537-39797617 ( 63) GAAAGAAA 1 chr11:76535448-76535528 ( 69) GAAAGGAA 1 chr1:153522551-153522631 ( 55) GAAAGGAA 1 chr17:14235143-14235223 ( 50) GAAAGGAA 1 chr19:50094705-50094785 ( 73) AAGAAAAA 1 chr19:17331061-17331141 ( 20) AAGAAAAA 1 chr6:27879874-27879954 ( 35) AAGAAAAA 1 chr10:51593936-51594016 ( 64) AAGAGAAA 1 chr1:120510819-120510899 ( 65) AAGAGAAA 1 chr22:41105972-41106052 ( 48) AAGAGAAA 1 chr22:17840428-17840508 ( 22) AAAAAAAA 1 chr9:99204259-99204339 ( 57) GAGAAAGA 1 chr19:35917674-35917754 ( 38) GAGATAAA 1 chr6:134679490-134679570 ( 52) GAGGAAAA 1 chr6:21404924-21405004 ( 73) AAGAGGAA 1 chr19:3369638-3369718 ( 23) AAGAGGAA 1 chr1:155057284-155057364 ( 69) GAGAAGGA 1 chr7:10819881-10819961 ( 42) GAGAAGGA 1 chr7:127299181-127299261 ( 4) GAGATGAA 1 chr8:124629018-124629098 ( 33) GAGGAGAA 1 chr1:151357102-151357182 ( 61) GAAAAAGA 1 chr20:5640418-5640498 ( 57) GAGGGAAA 1 chr8:62074858-62074938 ( 71) GAGGGAAA 1 chr21:31070568-31070648 ( 70) GAAATAAA 1 chr17:56757267-56757347 ( 71) GAAATAAA 1 chr4:48856011-48856091 ( 2) AAAAGGAA 1 chr12:112824417-11282449 ( 2) GAAGGAAA 1 chr1:24836498-24836578 ( 18) GAAAGGGA 1 chr1:246743307-246743387 ( 67) GAAAGGGA 1 chr1:166402068-166402148 ( 21) AAGAAAGA 1 chr6:31553903-31553983 ( 1) AAGAAAGA 1 chr8:110411571-110411651 ( 73) AAGGAAAA 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GARARRAA MEME-1 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 18250 bayes= 8.67311 E= 2.1e-067 -85 -1321 179 -1321 202 -1321 -1321 -1321 45 -1321 141 -1321 192 -1321 -198 -1321 133 -1321 43 -256 131 -1321 64 -1321 189 -1321 -157 -1321 202 -1321 -1321 -1321 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GARARRAA MEME-1 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 95 E= 2.1e-067 0.136842 0.000000 0.863158 0.000000 1.000000 0.000000 0.000000 0.000000 0.336842 0.000000 0.663158 0.000000 0.936842 0.000000 0.063158 0.000000 0.621053 0.000000 0.336842 0.042105 0.610526 0.000000 0.389474 0.000000 0.915789 0.000000 0.084211 0.000000 1.000000 0.000000 0.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GARARRAA MEME-1 regular expression -------------------------------------------------------------------------------- GA[GA]A[AG][AG]AA -------------------------------------------------------------------------------- Time 5.04 secs. ******************************************************************************** ******************************************************************************** MOTIF CTTTYTYT MEME-2 width = 8 sites = 79 llr = 656 E-value = 3.7e-051 ******************************************************************************** -------------------------------------------------------------------------------- Motif CTTTYTYT MEME-2 Description -------------------------------------------------------------------------------- Simplified A :::::::1 pos.-specific C 8::34:5: probability G :::::::: matrix T 2aa76a59 bits 2.0 ** * 1.8 ** * 1.6 ** * * 1.4 *** * * Relative 1.2 *** * * Entropy 1.0 ******** (12.0 bits) 0.8 ******** 0.6 ******** 0.4 ******** 0.2 ******** 0.0 -------- Multilevel CTTTTTCT consensus CC T sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CTTTYTYT MEME-2 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr3:14361200-14361280 24 3.00e-05 GCCTTACttc ctttttct cctgggcact chr17:67099985-67100065 67 3.00e-05 AAAAGAAGGA CTTTTTTT TTTTTT chr7:135569285-135569365 3 3.00e-05 CT CTTTTTCT CTTCTTATTC chr12:127395340-12739542 16 3.00e-05 TCTTGCACAG CTTTTTCT CCTAGTAAAC chr19:39146992-39147072 30 3.00e-05 gcccagccAA CTTTTTCT CTTAAGGCTC chr1:24836498-24836578 31 3.00e-05 agggatctct cttttttt cttagcagta chr4:77064-77144 16 3.00e-05 actttgctga cttttttt ctgtataact chr10:92681125-92681205 34 3.00e-05 CATCACTGCC CTTTTTTT CTTTGTCAGC chr7:86633923-86634003 37 3.00e-05 CCAACCAACA CTTTTTTT CCTAACACTT chr2:96855076-96855156 23 3.00e-05 cctcctgtgc ctttttct cttatgatcc chr2:12402529-12402609 29 3.00e-05 TCTCTGCTTC CTTTTTTT CTTATGAATG chr14:88459615-88459695 56 3.00e-05 AAGCAGCGAG CTTTTTCT TATCGCTCGC chr10:3936374-3936454 19 3.00e-05 TCTCTTTCTG CTTTTTCT CTTAGGCATT chr16:12367063-12367143 41 3.00e-05 CTCCAACTCA CTTTTTTT CTtaacagct chr8:62074858-62074938 9 3.00e-05 tttgtatg ctttttct cctattagtc chr3:136422377-136422457 11 3.00e-05 ACACAGAAAA CTTTTTTT CTttactgga chrX:49023106-49023186 32 3.00e-05 GGCGTGCTTT CTTTTTCT CTTCGCCGTC chr6:56580769-56580849 37 3.00e-05 atctgtatgc ctttttct cctatgaatc chr3:141013385-141013465 19 3.00e-05 GGCATTCCAA CTTTTTCT CTTTGTTTTT chr6:141151192-141151272 22 3.00e-05 GTCAAAATCA CTTTTTCT CCTAAGAGTC chr7:148413813-148413893 32 3.00e-05 gaggtccttt cttttttt cttaacagtt chr6:150581350-150581430 16 3.00e-05 GACCTTCTTC CTTTTTCT CCTGTTCGTC chr11:112149771-11214985 26 3.00e-05 ATTATGCTTC CTTTTTCT CTTATCAGCT chr9:37937027-37937107 39 6.10e-05 gtcagactta ctttcttt ctccctcgct chr1:168254845-168254925 37 6.10e-05 ATTTTCCTCT CTTTCTCT CCAAGGAGGC chr1:32423297-32423377 2 6.10e-05 a ctttcttt cttaactctc chr22:39181705-39181785 16 6.10e-05 tgctcacttc ctttcttt gcagccgtca chr1:21780666-21780746 55 6.10e-05 TCAACTGTGA CTTTCTTT CTTCAAAGTC chr17:27253163-27253243 5 6.10e-05 TTTA CTTTCTTT CTTAAAGGCT chr12:127568111-12756819 42 6.10e-05 gaagtgcttc ctttctct cctagggaca chr1:201482293-201482373 52 6.10e-05 TTGGACAATC CTTTCTTT CCAAGGAGCC chr11:112149979-11215005 8 6.10e-05 TTTTCTT CTTTCTCT TCTGATTGTT chr14:75949663-75949743 35 6.10e-05 acacccttgg ctttctct cctaacatgc chr16:15766824-15766904 23 6.10e-05 TCTGTTTGTT CTTTCTTT GGAGTCTTCT chr15:93419351-93419431 27 6.10e-05 cccttcctta ctttcttt cttGACagtc chr21:45166235-45166315 69 6.10e-05 cttttctttt ctttcttt tctt chrX:131029193-131029273 41 9.20e-05 CTGTGTTAAA CTTCTTTT CCTTGCAGTT chr12:71144395-71144475 47 9.20e-05 TTAGGTAGTA CTTCTTTT CTTGTGAATA chr16:75182736-75182816 46 9.20e-05 GAGGCTTCGC CTTCTTCT CTTTGTCAGG chr12:112824417-11282449 26 9.20e-05 TGGCTTATGA CTTCTTTT CTTTGGAATC chr2:86202693-86202773 22 9.20e-05 TTAGTGCTTC CTTCTTCT CTTTCCAATC chr16:28550207-28550287 49 9.20e-05 CCCTGCCTCT CTTCTTCT CCTAACGCTT chr1:116332910-116332990 37 9.20e-05 TACTTTCCCC CTTCTTCT CGTAGTAGCC chr21:30590290-30590370 58 9.20e-05 gttcaaatgc cttcttct ctttaacgcc chr1:8434997-8435077 11 9.20e-05 CATTTGCTGC CTTCTTCT CCATGAAGCC chr1:174202000-174202080 46 9.20e-05 TTCGTCCTTC CTTCTTTT CTtcttagcc chr9:99204259-99204339 68 9.20e-05 agaaagaata cttctttt cttag chr5:39077158-39077238 67 1.24e-04 GAGAATGTGA CTTCCTCT TCTTAG chr7:127299181-127299261 36 1.24e-04 TCTGTTGCTA CTTCCTCT CTTGGGAGAC chr22:21410343-21410423 11 1.24e-04 CCTCTTCTGA CTTCCTCT CTTAGCTTCT chr15:90749360-90749440 38 1.24e-04 TCAATCACTC CTTCCTTT ATCTTCTTAG chr3:122920835-122920915 27 1.24e-04 CAGTCCTCTT CTTCCTTT CTTAGGGGTC chr19:42052809-42052889 57 1.24e-04 CTCAAACTCA CTTCCTCT CCGGACAGGC chr19:6652928-6653008 63 1.24e-04 tcattgctcc cttcctct tcaaacattc chr1:246743307-246743387 19 1.24e-04 aaaattagag cttccttt cttactgcTC chr1:33684587-33684667 29 1.24e-04 AAGAGACTTC CTTCCTTT CTCAGGAAGC chr6:31553903-31553983 36 1.24e-04 TGGAGCCGAA CTTCCTCT CCTAACAATG chr3:139153097-139153177 14 1.24e-04 ggcaagttaa cttccttt cctgggagtc chr15:63343723-63343803 14 1.53e-04 TCATCAGTGT TTTTTTTT TTCCCCCCTT chr2:234766582-234766662 51 1.53e-04 AAGGGTTTGC TTTTTTCT GTTGCCCTAG chr10:25406930-25407010 23 1.53e-04 CTTGCCTTGC TTTTTTCT TCCCCTGACC chr1:236959359-236959439 9 1.53e-04 TGGAAGTT TTTTTTTT TGCATGGTGT chr5:96377277-96377357 66 1.83e-04 tttttcttgt ttttcttt tcctttt chr22:17840428-17840508 54 1.83e-04 CTTTCTGCCA TTTTCTCT CTCCAGTAGT chr1:155057284-155057364 10 1.83e-04 CTCGCCTCC TTTTCTTT GGAGGCAGGC chr16:16092638-16092718 21 1.83e-04 AAAGGACAAC TTTTCTTT GTCCTTTAGA chr18:12247041-12247121 34 1.83e-04 TTGACTTGTG TTTTCTCT TAACCACCGG chr6:21404924-21405004 1 1.83e-04 . TTTTCTTT CTTAGGAGGC chr1:61658916-61658996 65 1.83e-04 CTTGCAGTAT TTTTCTTT TGATCACT chr5:150114258-150114338 36 2.13e-04 ggctagcttg ctttttca gcaagtaggc chr1:39339292-39339372 61 2.13e-04 GCGAGCGCAT CTTTTTCA TCTGGGACCT chr19:3369638-3369718 4 2.13e-04 GCG CTTTTTCA CTTTTACTCT chr6:152000392-152000472 45 2.43e-04 TGTGGCCTGT TTTCTTCT CTTAACATGG chr4:89835759-89835839 43 2.43e-04 actatgctct tttcttct taacaggctt chr6:150597497-150597577 17 2.74e-04 CTAACGCTCA CTTTCTTA AGAGAAGAAA chr11:4006375-4006455 28 2.74e-04 TAGGGAAATT CTTTCTCA CTAAGCAGGC chr8:129289704-129289784 34 2.74e-04 agtctgcttg ctttctca cttgagaggc chr18:20616933-20617013 31 3.36e-04 atgtggctgc cttcttta ctgcatatgc chr12:120339895-12033997 56 3.68e-04 CCGTTAGTTG CTTCCTTA TCTTTAAACC -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CTTTYTYT MEME-2 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr3:14361200-14361280 3e-05 23_[+2]_49 chr17:67099985-67100065 3e-05 66_[+2]_6 chr7:135569285-135569365 3e-05 2_[+2]_70 chr12:127395340-12739542 3e-05 15_[+2]_57 chr19:39146992-39147072 3e-05 29_[+2]_43 chr1:24836498-24836578 3e-05 30_[+2]_42 chr4:77064-77144 3e-05 15_[+2]_57 chr10:92681125-92681205 3e-05 33_[+2]_39 chr7:86633923-86634003 3e-05 36_[+2]_36 chr2:96855076-96855156 3e-05 22_[+2]_50 chr2:12402529-12402609 3e-05 28_[+2]_44 chr14:88459615-88459695 3e-05 55_[+2]_17 chr10:3936374-3936454 3e-05 18_[+2]_54 chr16:12367063-12367143 3e-05 40_[+2]_32 chr8:62074858-62074938 3e-05 8_[+2]_64 chr3:136422377-136422457 3e-05 10_[+2]_62 chrX:49023106-49023186 3e-05 31_[+2]_41 chr6:56580769-56580849 3e-05 36_[+2]_36 chr3:141013385-141013465 3e-05 18_[+2]_54 chr6:141151192-141151272 3e-05 21_[+2]_51 chr7:148413813-148413893 3e-05 31_[+2]_41 chr6:150581350-150581430 3e-05 15_[+2]_57 chr11:112149771-11214985 3e-05 25_[+2]_47 chr9:37937027-37937107 6.1e-05 38_[+2]_34 chr1:168254845-168254925 6.1e-05 36_[+2]_36 chr1:32423297-32423377 6.1e-05 1_[+2]_71 chr22:39181705-39181785 6.1e-05 15_[+2]_57 chr1:21780666-21780746 6.1e-05 54_[+2]_18 chr17:27253163-27253243 6.1e-05 4_[+2]_68 chr12:127568111-12756819 6.1e-05 41_[+2]_31 chr1:201482293-201482373 6.1e-05 51_[+2]_21 chr11:112149979-11215005 6.1e-05 7_[+2]_65 chr14:75949663-75949743 6.1e-05 34_[+2]_38 chr16:15766824-15766904 6.1e-05 22_[+2]_50 chr15:93419351-93419431 6.1e-05 26_[+2]_46 chr21:45166235-45166315 6.1e-05 68_[+2]_4 chrX:131029193-131029273 9.2e-05 40_[+2]_32 chr12:71144395-71144475 9.2e-05 46_[+2]_26 chr16:75182736-75182816 9.2e-05 45_[+2]_27 chr12:112824417-11282449 9.2e-05 25_[+2]_47 chr2:86202693-86202773 9.2e-05 21_[+2]_51 chr16:28550207-28550287 9.2e-05 48_[+2]_24 chr1:116332910-116332990 9.2e-05 36_[+2]_36 chr21:30590290-30590370 9.2e-05 57_[+2]_15 chr1:8434997-8435077 9.2e-05 10_[+2]_62 chr1:174202000-174202080 9.2e-05 45_[+2]_27 chr9:99204259-99204339 9.2e-05 67_[+2]_5 chr5:39077158-39077238 0.00012 66_[+2]_6 chr7:127299181-127299261 0.00012 35_[+2]_37 chr22:21410343-21410423 0.00012 10_[+2]_62 chr15:90749360-90749440 0.00012 37_[+2]_35 chr3:122920835-122920915 0.00012 26_[+2]_46 chr19:42052809-42052889 0.00012 56_[+2]_16 chr19:6652928-6653008 0.00012 62_[+2]_10 chr1:246743307-246743387 0.00012 18_[+2]_54 chr1:33684587-33684667 0.00012 28_[+2]_44 chr6:31553903-31553983 0.00012 35_[+2]_37 chr3:139153097-139153177 0.00012 13_[+2]_59 chr15:63343723-63343803 0.00015 13_[+2]_59 chr2:234766582-234766662 0.00015 50_[+2]_22 chr10:25406930-25407010 0.00015 22_[+2]_50 chr1:236959359-236959439 0.00015 8_[+2]_64 chr5:96377277-96377357 0.00018 65_[+2]_7 chr22:17840428-17840508 0.00018 53_[+2]_19 chr1:155057284-155057364 0.00018 9_[+2]_63 chr16:16092638-16092718 0.00018 20_[+2]_52 chr18:12247041-12247121 0.00018 33_[+2]_39 chr6:21404924-21405004 0.00018 [+2]_72 chr1:61658916-61658996 0.00018 64_[+2]_8 chr5:150114258-150114338 0.00021 35_[+2]_37 chr1:39339292-39339372 0.00021 60_[+2]_12 chr19:3369638-3369718 0.00021 3_[+2]_69 chr6:152000392-152000472 0.00024 44_[+2]_28 chr4:89835759-89835839 0.00024 42_[+2]_30 chr6:150597497-150597577 0.00027 16_[+2]_56 chr11:4006375-4006455 0.00027 27_[+2]_45 chr8:129289704-129289784 0.00027 33_[+2]_39 chr18:20616933-20617013 0.00034 30_[+2]_42 chr12:120339895-12033997 0.00037 55_[+2]_17 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CTTTYTYT MEME-2 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF CTTTYTYT width=8 seqs=79 chr3:14361200-14361280 ( 24) CTTTTTCT 1 chr17:67099985-67100065 ( 67) CTTTTTTT 1 chr7:135569285-135569365 ( 3) CTTTTTCT 1 chr12:127395340-12739542 ( 16) CTTTTTCT 1 chr19:39146992-39147072 ( 30) CTTTTTCT 1 chr1:24836498-24836578 ( 31) CTTTTTTT 1 chr4:77064-77144 ( 16) CTTTTTTT 1 chr10:92681125-92681205 ( 34) CTTTTTTT 1 chr7:86633923-86634003 ( 37) CTTTTTTT 1 chr2:96855076-96855156 ( 23) CTTTTTCT 1 chr2:12402529-12402609 ( 29) CTTTTTTT 1 chr14:88459615-88459695 ( 56) CTTTTTCT 1 chr10:3936374-3936454 ( 19) CTTTTTCT 1 chr16:12367063-12367143 ( 41) CTTTTTTT 1 chr8:62074858-62074938 ( 9) CTTTTTCT 1 chr3:136422377-136422457 ( 11) CTTTTTTT 1 chrX:49023106-49023186 ( 32) CTTTTTCT 1 chr6:56580769-56580849 ( 37) CTTTTTCT 1 chr3:141013385-141013465 ( 19) CTTTTTCT 1 chr6:141151192-141151272 ( 22) CTTTTTCT 1 chr7:148413813-148413893 ( 32) CTTTTTTT 1 chr6:150581350-150581430 ( 16) CTTTTTCT 1 chr11:112149771-11214985 ( 26) CTTTTTCT 1 chr9:37937027-37937107 ( 39) CTTTCTTT 1 chr1:168254845-168254925 ( 37) CTTTCTCT 1 chr1:32423297-32423377 ( 2) CTTTCTTT 1 chr22:39181705-39181785 ( 16) CTTTCTTT 1 chr1:21780666-21780746 ( 55) CTTTCTTT 1 chr17:27253163-27253243 ( 5) CTTTCTTT 1 chr12:127568111-12756819 ( 42) CTTTCTCT 1 chr1:201482293-201482373 ( 52) CTTTCTTT 1 chr11:112149979-11215005 ( 8) CTTTCTCT 1 chr14:75949663-75949743 ( 35) CTTTCTCT 1 chr16:15766824-15766904 ( 23) CTTTCTTT 1 chr15:93419351-93419431 ( 27) CTTTCTTT 1 chr21:45166235-45166315 ( 69) CTTTCTTT 1 chrX:131029193-131029273 ( 41) CTTCTTTT 1 chr12:71144395-71144475 ( 47) CTTCTTTT 1 chr16:75182736-75182816 ( 46) CTTCTTCT 1 chr12:112824417-11282449 ( 26) CTTCTTTT 1 chr2:86202693-86202773 ( 22) CTTCTTCT 1 chr16:28550207-28550287 ( 49) CTTCTTCT 1 chr1:116332910-116332990 ( 37) CTTCTTCT 1 chr21:30590290-30590370 ( 58) CTTCTTCT 1 chr1:8434997-8435077 ( 11) CTTCTTCT 1 chr1:174202000-174202080 ( 46) CTTCTTTT 1 chr9:99204259-99204339 ( 68) CTTCTTTT 1 chr5:39077158-39077238 ( 67) CTTCCTCT 1 chr7:127299181-127299261 ( 36) CTTCCTCT 1 chr22:21410343-21410423 ( 11) CTTCCTCT 1 chr15:90749360-90749440 ( 38) CTTCCTTT 1 chr3:122920835-122920915 ( 27) CTTCCTTT 1 chr19:42052809-42052889 ( 57) CTTCCTCT 1 chr19:6652928-6653008 ( 63) CTTCCTCT 1 chr1:246743307-246743387 ( 19) CTTCCTTT 1 chr1:33684587-33684667 ( 29) CTTCCTTT 1 chr6:31553903-31553983 ( 36) CTTCCTCT 1 chr3:139153097-139153177 ( 14) CTTCCTTT 1 chr15:63343723-63343803 ( 14) TTTTTTTT 1 chr2:234766582-234766662 ( 51) TTTTTTCT 1 chr10:25406930-25407010 ( 23) TTTTTTCT 1 chr1:236959359-236959439 ( 9) TTTTTTTT 1 chr5:96377277-96377357 ( 66) TTTTCTTT 1 chr22:17840428-17840508 ( 54) TTTTCTCT 1 chr1:155057284-155057364 ( 10) TTTTCTTT 1 chr16:16092638-16092718 ( 21) TTTTCTTT 1 chr18:12247041-12247121 ( 34) TTTTCTCT 1 chr6:21404924-21405004 ( 1) TTTTCTTT 1 chr1:61658916-61658996 ( 65) TTTTCTTT 1 chr5:150114258-150114338 ( 36) CTTTTTCA 1 chr1:39339292-39339372 ( 61) CTTTTTCA 1 chr19:3369638-3369718 ( 4) CTTTTTCA 1 chr6:152000392-152000472 ( 45) TTTCTTCT 1 chr4:89835759-89835839 ( 43) TTTCTTCT 1 chr6:150597497-150597577 ( 17) CTTTCTTA 1 chr11:4006375-4006455 ( 28) CTTTCTCA 1 chr8:129289704-129289784 ( 34) CTTTCTCA 1 chr18:20616933-20617013 ( 31) CTTCTTTA 1 chr12:120339895-12033997 ( 56) CTTCCTTA 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CTTTYTYT MEME-2 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 18250 bayes= 9.68137 E= 3.7e-051 -1295 171 -1295 -59 -1295 -1295 -1295 201 -1295 -1295 -1295 201 -1295 36 -1295 144 -1295 79 -1295 117 -1295 -1295 -1295 201 -1295 102 -1295 96 -129 -1295 -1295 186 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CTTTYTYT MEME-2 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 79 E= 3.7e-051 0.000000 0.835443 0.000000 0.164557 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.329114 0.000000 0.670886 0.000000 0.443038 0.000000 0.556962 0.000000 0.000000 0.000000 1.000000 0.000000 0.518987 0.000000 0.481013 0.101266 0.000000 0.000000 0.898734 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CTTTYTYT MEME-2 regular expression -------------------------------------------------------------------------------- CTT[TC][TC]T[CT]T -------------------------------------------------------------------------------- Time 8.74 secs. ******************************************************************************** ******************************************************************************** MOTIF CGCGCGCG MEME-3 width = 8 sites = 29 llr = 272 E-value = 4.4e-010 ******************************************************************************** -------------------------------------------------------------------------------- Motif CGCGCGCG MEME-3 Description -------------------------------------------------------------------------------- Simplified A :::::::: pos.-specific C a:a2a:92 probability G :a:8:a18 matrix T :::1:::: bits 2.0 *** * 1.8 *** ** 1.6 *** ** 1.4 *** **** Relative 1.2 *** **** Entropy 1.0 ******** (13.5 bits) 0.8 ******** 0.6 ******** 0.4 ******** 0.2 ******** 0.0 -------- Multilevel CGCGCGCG consensus sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CGCGCGCG MEME-3 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr2:181845152-181845232 5 1.68e-05 TGGC CGCGCGCG GGCGGACGCG chr8:142011385-142011465 15 1.68e-05 GGCGCGGGCC CGCGCGCG TGCGCGGCAG chr5:88179056-88179136 40 1.68e-05 gccgcgcatt cgcgcgcg cCGAGGCCGC chr19:4400579-4400659 18 1.68e-05 ccccggcccc cgcgcgcg cccccggccc chr8:74659179-74659259 58 1.68e-05 gcccggccgg cgcgcgcg cccggcaccg chr22:31741990-31742070 26 1.68e-05 cgcgcaggcg cgcgcgcg cgccgcggcT chr6:69345070-69345150 12 1.68e-05 gcacccggga cgcgcgcg cacacgagca chr8:142402102-142402182 30 1.68e-05 TGCGCGAGGG CGCGCGCG TCCCGAGCCC chr1:40367551-40367631 57 1.68e-05 gccccccccg cgcgcgcg cccTCCCTCG chr11:78128913-78128993 13 1.68e-05 ccggcAGCCT CGCGCGCG CCCGCTCCCC chr15:99191695-99191775 56 1.68e-05 agggcgcgcg cgcgcgcg cgagcCCCCA chr19:11071621-11071701 19 1.68e-05 agccggcgag cgcgcgcg cagcgggggc chr1:9884163-9884243 16 1.68e-05 gcggagggag cgcgcgcg gcggACCCGG chr11:13299091-13299171 51 1.68e-05 GCTGCCGAGC CGCGCGCG GATTGGCTGG chr17:44344236-44344316 61 1.68e-05 gccgcccggc cgcgcgcg cgcgccgccg chr4:1242610-1242690 73 1.68e-05 cggccggaaa cgcgcgcg chr19:35759327-35759407 39 1.68e-05 gacagaccag cgcgcgcg ccccgggccg chr11:46143053-46143133 3 3.40e-05 CT CGCCCGCG CGGGAGCccg chr1:10754869-10754949 45 3.40e-05 CCGAGTAAGG CGCCCGCG GGCACGCGCC chr16:48419303-48419383 30 5.11e-05 TCGAGCCCGC CGCGCGCC CCCGCTAAAT chr9:101558826-101558906 51 5.11e-05 ccgcccgcgc cgcgcgcc TACTGTGTGC chr7:116593779-116593859 31 6.75e-05 TAGTGCAACT cgcgcggg gccgcggcca chr11:925770-925850 38 8.42e-05 CGTCCGTCGT cgctcgcg tgcgtgcgcg chr14:88459615-88459695 67 8.42e-05 TTTTTCTTAT CGCTCGCG TGTCTG chr18:74534415-74534495 25 1.02e-04 cgggcagctc cgcccgcc tctagcgccg chr17:77784013-77784093 36 1.02e-04 TGTGCGCGAG CGCCCGCC GAGCGGCCGC chr7:150756612-150756692 40 1.18e-04 AAGGCGGGAC CGCGCACG GTgcgccggg chr19:50094705-50094785 39 1.35e-04 ctccctcccc cgcccGGG GCCTTCCCGG chr2:10091583-10091663 50 1.52e-04 CCTCGCGGAA cgcgcggc ccccgccccc -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CGCGCGCG MEME-3 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr2:181845152-181845232 1.7e-05 4_[+3]_68 chr8:142011385-142011465 1.7e-05 14_[+3]_58 chr5:88179056-88179136 1.7e-05 39_[+3]_33 chr19:4400579-4400659 1.7e-05 17_[+3]_55 chr8:74659179-74659259 1.7e-05 57_[+3]_15 chr22:31741990-31742070 1.7e-05 25_[+3]_47 chr6:69345070-69345150 1.7e-05 11_[+3]_61 chr8:142402102-142402182 1.7e-05 29_[+3]_43 chr1:40367551-40367631 1.7e-05 56_[+3]_16 chr11:78128913-78128993 1.7e-05 12_[+3]_60 chr15:99191695-99191775 1.7e-05 55_[+3]_17 chr19:11071621-11071701 1.7e-05 18_[+3]_54 chr1:9884163-9884243 1.7e-05 15_[+3]_57 chr11:13299091-13299171 1.7e-05 50_[+3]_22 chr17:44344236-44344316 1.7e-05 60_[+3]_12 chr4:1242610-1242690 1.7e-05 72_[+3] chr19:35759327-35759407 1.7e-05 38_[+3]_34 chr11:46143053-46143133 3.4e-05 2_[+3]_70 chr1:10754869-10754949 3.4e-05 44_[+3]_28 chr16:48419303-48419383 5.1e-05 29_[+3]_43 chr9:101558826-101558906 5.1e-05 50_[+3]_22 chr7:116593779-116593859 6.8e-05 30_[+3]_42 chr11:925770-925850 8.4e-05 37_[+3]_35 chr14:88459615-88459695 8.4e-05 66_[+3]_6 chr18:74534415-74534495 0.0001 24_[+3]_48 chr17:77784013-77784093 0.0001 35_[+3]_37 chr7:150756612-150756692 0.00012 39_[+3]_33 chr19:50094705-50094785 0.00014 38_[+3]_34 chr2:10091583-10091663 0.00015 49_[+3]_23 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CGCGCGCG MEME-3 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF CGCGCGCG width=8 seqs=29 chr2:181845152-181845232 ( 5) CGCGCGCG 1 chr8:142011385-142011465 ( 15) CGCGCGCG 1 chr5:88179056-88179136 ( 40) CGCGCGCG 1 chr19:4400579-4400659 ( 18) CGCGCGCG 1 chr8:74659179-74659259 ( 58) CGCGCGCG 1 chr22:31741990-31742070 ( 26) CGCGCGCG 1 chr6:69345070-69345150 ( 12) CGCGCGCG 1 chr8:142402102-142402182 ( 30) CGCGCGCG 1 chr1:40367551-40367631 ( 57) CGCGCGCG 1 chr11:78128913-78128993 ( 13) CGCGCGCG 1 chr15:99191695-99191775 ( 56) CGCGCGCG 1 chr19:11071621-11071701 ( 19) CGCGCGCG 1 chr1:9884163-9884243 ( 16) CGCGCGCG 1 chr11:13299091-13299171 ( 51) CGCGCGCG 1 chr17:44344236-44344316 ( 61) CGCGCGCG 1 chr4:1242610-1242690 ( 73) CGCGCGCG 1 chr19:35759327-35759407 ( 39) CGCGCGCG 1 chr11:46143053-46143133 ( 3) CGCCCGCG 1 chr1:10754869-10754949 ( 45) CGCCCGCG 1 chr16:48419303-48419383 ( 30) CGCGCGCC 1 chr9:101558826-101558906 ( 51) CGCGCGCC 1 chr7:116593779-116593859 ( 31) CGCGCGGG 1 chr11:925770-925850 ( 38) CGCTCGCG 1 chr14:88459615-88459695 ( 67) CGCTCGCG 1 chr18:74534415-74534495 ( 25) CGCCCGCC 1 chr17:77784013-77784093 ( 36) CGCCCGCC 1 chr7:150756612-150756692 ( 40) CGCGCACG 1 chr19:50094705-50094785 ( 39) CGCCCGGG 1 chr2:10091583-10091663 ( 50) CGCGCGGC 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CGCGCGCG MEME-3 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 18250 bayes= 9.93691 E= 4.4e-010 -1150 197 -1150 -1150 -1150 -1150 200 -1150 -1150 197 -1150 -1150 -1150 -57 160 -184 -1150 197 -1150 -1150 -284 -1150 195 -1150 -1150 181 -127 -1150 -1150 -57 173 -1150 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CGCGCGCG MEME-3 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 29 E= 4.4e-010 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.172414 0.758621 0.068966 0.000000 1.000000 0.000000 0.000000 0.034483 0.000000 0.965517 0.000000 0.000000 0.896552 0.103448 0.000000 0.000000 0.172414 0.827586 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CGCGCGCG MEME-3 regular expression -------------------------------------------------------------------------------- CGCGCGCG -------------------------------------------------------------------------------- Time 12.30 secs. ******************************************************************************** ******************************************************************************** MOTIF MAGAAARG MEME-4 width = 8 sites = 32 llr = 265 E-value = 4.3e+001 ******************************************************************************** -------------------------------------------------------------------------------- Motif MAGAAARG MEME-4 Description -------------------------------------------------------------------------------- Simplified A 5a1a7a73 pos.-specific C 5::::::: probability G ::9:::38 matrix T ::::3::: bits 2.0 * * * 1.8 * * * 1.6 * * * 1.4 *** * Relative 1.2 ***** * Entropy 1.0 ******** (11.9 bits) 0.8 ******** 0.6 ******** 0.4 ******** 0.2 ******** 0.0 -------- Multilevel AAGAAAAG consensus C T GA sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif MAGAAARG MEME-4 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr7:130134453-130134533 11 1.42e-05 AGAGTCTGCT AAGAAAAG CAGAAATGTA chr2:234766582-234766662 36 1.42e-05 TTAGGCTGCT AAGAAAAG GGTTTGCTTT chr6:17702249-17702329 59 1.42e-05 AGTGGTTACT AAGAAAAG CAAGCAGCCT chrX:65225409-65225489 48 1.42e-05 GAATGTTCAG AAGAAAAG Taggataaag chr6:27255833-27255913 43 1.42e-05 GAAGATTACT AAGAAAAG TTTCCTGTCT chr8:110411571-110411651 18 2.89e-05 TTTCCACATA CAGAAAAG CTTAAGGCTG chr1:151357102-151357182 3 2.89e-05 gg cagaaaag gagaagatgt chr12:76225446-76225526 8 2.89e-05 ATATTCC CAGAAAAG CCATAACAAA chr1:61658916-61658996 19 2.89e-05 TAAAATTGAG CAGAAAAG CATAATAAGA chr18:5296137-5296217 10 4.33e-05 GGGCGAGCA AAGAAAGG GTTAATCCGG chr4:159677496-159677576 31 4.33e-05 acagcttcgt aagaaagg atgcacagat chr13:110368287-11036836 58 5.82e-05 AGGATGGGGG CAGAAAGG AGCCTCAAAT chr6:82980692-82980772 52 5.82e-05 CCTTAGTAGT CAGAAAGG AGGCAAAATA chr17:14235143-14235223 22 5.82e-05 AGGGAGTTCT CAGAAAGG GTGGCTTTGA chr4:10187546-10187626 43 7.24e-05 TGCAGAGCCC AAGATAAG AGATGGCCCT chr5:126363082-126363162 47 7.24e-05 GTGCCTCATG AAGATAAG GATTCTACCT chrX:150267690-150267770 42 8.72e-05 cattgCCTCC CAGATAAG AGGAAGTAAG chr21:45166235-45166315 29 8.72e-05 gaagcagcca cagataag aggtgtacaa chr6:126240136-126240216 55 1.01e-04 TAAGAAGGAA AAGAAAAA AAATGAACAA chr1:181875030-181875110 58 1.16e-04 caggagttca cagaaaaa agtgagactc chr11:4006375-4006455 14 1.45e-04 CTTGCTTTGA CAGATAGG GAAATTCTTT chr6:82980892-82980972 50 1.45e-04 TGTTATTTGA CAGATAGG AAACTGAATA chr3:185220856-185220936 28 1.59e-04 CTGAGAGCCC AAGAAAGA CTGTTAGGAA chr9:4618858-4618938 45 1.59e-04 AAGAAGCTAG AAGAAAGA GGAACAGGCA chr10:30723859-30723939 54 1.59e-04 CTTTTGGTCT AAGAAAGA ATACTAGGAG chr19:14779061-14779141 2 1.88e-04 c aaaaaaag aagaagaaga chr6:35741260-35741340 34 1.88e-04 CTTGCACCAC CAGAAAGA TGCAGAAGAA chr19:17331061-17331141 4 1.88e-04 aaa aaaaaaag attctaaaaa chr5:126015317-126015397 14 1.88e-04 aaaaacaaac aaaaaaag aatgcttgga chr6:150597497-150597577 57 2.17e-04 AGTGTAAATG AAGATAAA CTCTGTGGCT chr12:71144395-71144475 8 2.31e-04 GTTCCAT CAGATAAA CTTGGCTTTG chr6:6919033-6919113 30 3.18e-04 GGCTAGAAGC CAAATAAG GCAAAATGAC -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif MAGAAARG MEME-4 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr7:130134453-130134533 1.4e-05 10_[+4]_62 chr2:234766582-234766662 1.4e-05 35_[+4]_37 chr6:17702249-17702329 1.4e-05 58_[+4]_14 chrX:65225409-65225489 1.4e-05 47_[+4]_25 chr6:27255833-27255913 1.4e-05 42_[+4]_30 chr8:110411571-110411651 2.9e-05 17_[+4]_55 chr1:151357102-151357182 2.9e-05 2_[+4]_70 chr12:76225446-76225526 2.9e-05 7_[+4]_65 chr1:61658916-61658996 2.9e-05 18_[+4]_54 chr18:5296137-5296217 4.3e-05 9_[+4]_63 chr4:159677496-159677576 4.3e-05 30_[+4]_42 chr13:110368287-11036836 5.8e-05 57_[+4]_15 chr6:82980692-82980772 5.8e-05 51_[+4]_21 chr17:14235143-14235223 5.8e-05 21_[+4]_51 chr4:10187546-10187626 7.2e-05 42_[+4]_30 chr5:126363082-126363162 7.2e-05 46_[+4]_26 chrX:150267690-150267770 8.7e-05 41_[+4]_31 chr21:45166235-45166315 8.7e-05 28_[+4]_44 chr6:126240136-126240216 0.0001 54_[+4]_18 chr1:181875030-181875110 0.00012 57_[+4]_15 chr11:4006375-4006455 0.00015 13_[+4]_59 chr6:82980892-82980972 0.00015 49_[+4]_23 chr3:185220856-185220936 0.00016 27_[+4]_45 chr9:4618858-4618938 0.00016 44_[+4]_28 chr10:30723859-30723939 0.00016 53_[+4]_19 chr19:14779061-14779141 0.00019 1_[+4]_71 chr6:35741260-35741340 0.00019 33_[+4]_39 chr19:17331061-17331141 0.00019 3_[+4]_69 chr5:126015317-126015397 0.00019 13_[+4]_59 chr6:150597497-150597577 0.00022 56_[+4]_16 chr12:71144395-71144475 0.00023 7_[+4]_65 chr6:6919033-6919113 0.00032 29_[+4]_43 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif MAGAAARG MEME-4 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF MAGAAARG width=8 seqs=32 chr7:130134453-130134533 ( 11) AAGAAAAG 1 chr2:234766582-234766662 ( 36) AAGAAAAG 1 chr6:17702249-17702329 ( 59) AAGAAAAG 1 chrX:65225409-65225489 ( 48) AAGAAAAG 1 chr6:27255833-27255913 ( 43) AAGAAAAG 1 chr8:110411571-110411651 ( 18) CAGAAAAG 1 chr1:151357102-151357182 ( 3) CAGAAAAG 1 chr12:76225446-76225526 ( 8) CAGAAAAG 1 chr1:61658916-61658996 ( 19) CAGAAAAG 1 chr18:5296137-5296217 ( 10) AAGAAAGG 1 chr4:159677496-159677576 ( 31) AAGAAAGG 1 chr13:110368287-11036836 ( 58) CAGAAAGG 1 chr6:82980692-82980772 ( 52) CAGAAAGG 1 chr17:14235143-14235223 ( 22) CAGAAAGG 1 chr4:10187546-10187626 ( 43) AAGATAAG 1 chr5:126363082-126363162 ( 47) AAGATAAG 1 chrX:150267690-150267770 ( 42) CAGATAAG 1 chr21:45166235-45166315 ( 29) CAGATAAG 1 chr6:126240136-126240216 ( 55) AAGAAAAA 1 chr1:181875030-181875110 ( 58) CAGAAAAA 1 chr11:4006375-4006455 ( 14) CAGATAGG 1 chr6:82980892-82980972 ( 50) CAGATAGG 1 chr3:185220856-185220936 ( 28) AAGAAAGA 1 chr9:4618858-4618938 ( 45) AAGAAAGA 1 chr10:30723859-30723939 ( 54) AAGAAAGA 1 chr19:14779061-14779141 ( 2) AAAAAAAG 1 chr6:35741260-35741340 ( 34) CAGAAAGA 1 chr19:17331061-17331141 ( 4) AAAAAAAG 1 chr5:126015317-126015397 ( 14) AAAAAAAG 1 chr6:150597497-150597577 ( 57) AAGATAAA 1 chr12:71144395-71144475 ( 8) CAGATAAA 1 chr6:6919033-6919113 ( 30) CAAATAAG 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif MAGAAARG MEME-4 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 18250 bayes= 11.155 E= 4.3e+001 110 87 -1164 -1164 202 -1164 -1164 -1164 -98 -1164 181 -1164 202 -1164 -1164 -1164 154 -1164 -1164 18 202 -1164 -1164 -1164 141 -1164 46 -1164 2 -1164 159 -1164 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif MAGAAARG MEME-4 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 32 E= 4.3e+001 0.531250 0.468750 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.125000 0.000000 0.875000 0.000000 1.000000 0.000000 0.000000 0.000000 0.718750 0.000000 0.000000 0.281250 1.000000 0.000000 0.000000 0.000000 0.656250 0.000000 0.343750 0.000000 0.250000 0.000000 0.750000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif MAGAAARG MEME-4 regular expression -------------------------------------------------------------------------------- [AC]AGA[AT]A[AG][GA] -------------------------------------------------------------------------------- Time 15.81 secs. ******************************************************************************** ******************************************************************************** MOTIF CGCCSCCG MEME-5 width = 8 sites = 24 llr = 210 E-value = 1.0e+003 ******************************************************************************** -------------------------------------------------------------------------------- Motif CGCCSCCG MEME-5 Description -------------------------------------------------------------------------------- Simplified A :::::::: pos.-specific C 7:a93a9: probability G 3a:16:1a matrix T ::::1::: bits 2.0 ** * 1.8 ** * * 1.6 *** *** 1.4 *** *** Relative 1.2 *** *** Entropy 1.0 **** *** (12.6 bits) 0.8 ******** 0.6 ******** 0.4 ******** 0.2 ******** 0.0 -------- Multilevel CGCCGCCG consensus G C sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CGCCSCCG MEME-5 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr18:74534415-74534495 9 1.72e-05 gggccgcc cgccgccg ggcagctccg chr10:98592493-98592573 10 1.72e-05 gcgccccgg cgccgccg ccgGCTTATT chr11:46143053-46143133 43 1.72e-05 gccggcccgc cgccgccg ccgccgtgcg chr1:40367551-40367631 13 1.72e-05 CGCACATGCG CGCCGCCG AGAGCGCGGC chr17:44344236-44344316 71 1.72e-05 cgcgcgcgcg cgccgccg ag chr19:4400579-4400659 5 3.48e-05 cgcg cgcccccg gcccccgcgc chr8:74659179-74659259 11 3.48e-05 tcgcgccgcg cgcccccg cctgcgcagc chr18:5296137-5296217 63 3.48e-05 ACTACGGGGC CGCCCCCG GAGGGCCCTG chr9:101558826-101558906 1 3.48e-05 . cgcccccg gataccgccc chr4:1242610-1242690 11 3.48e-05 gcgctcggtc cgcccccg cgccccccgc chr19:35759327-35759407 19 3.48e-05 cgcgcccgcc cgcccccg gagacagacc chr11:925770-925850 22 5.15e-05 CACCCGCCCC GGCCGCCG TCCGTCGTcg chr6:69345070-69345150 37 5.15e-05 gcacgcggga ggccgccg cgcggacgcg chr11:78128913-78128993 65 5.15e-05 CTCTCCGCCC GGCCGCCG GGGGAGCA chr11:13299091-13299171 73 5.15e-05 GGCTGGGGGC GGCCGCCG chr1:10754869-10754949 73 5.15e-05 CACTCTTgcc ggccgccg chr7:150756612-150756692 2 6.87e-05 c ggcccccg ctcccgcctc chr1:9884163-9884243 45 8.58e-05 AGCGGGCGCG CGCCTCCG AGCCCGTCGG chr22:31741990-31742070 34 1.19e-04 cgcgcgcgcg cgccgcgg cTTTTCCCGG chr8:142402102-142402182 6 1.19e-04 GGAGC CGCGGCCG CGCCTGTGCG chr9:117160394-117160474 70 1.19e-04 TGAGGAACCC CGCGGCCG GCA chr19:50658904-50658984 70 1.36e-04 ttcctcacat ggcctccg gga chr7:116593779-116593859 8 1.70e-04 cctcccc cgccccgg AAAGTTAGTG chr7:10819881-10819961 29 2.20e-04 ATGGCTGCGT CGCCGCCT GTTAGGAGAA -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CGCCSCCG MEME-5 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr18:74534415-74534495 1.7e-05 8_[+5]_64 chr10:98592493-98592573 1.7e-05 9_[+5]_63 chr11:46143053-46143133 1.7e-05 42_[+5]_30 chr1:40367551-40367631 1.7e-05 12_[+5]_60 chr17:44344236-44344316 1.7e-05 70_[+5]_2 chr19:4400579-4400659 3.5e-05 4_[+5]_68 chr8:74659179-74659259 3.5e-05 10_[+5]_62 chr18:5296137-5296217 3.5e-05 62_[+5]_10 chr9:101558826-101558906 3.5e-05 [+5]_72 chr4:1242610-1242690 3.5e-05 10_[+5]_62 chr19:35759327-35759407 3.5e-05 18_[+5]_54 chr11:925770-925850 5.2e-05 21_[+5]_51 chr6:69345070-69345150 5.2e-05 36_[+5]_36 chr11:78128913-78128993 5.2e-05 64_[+5]_8 chr11:13299091-13299171 5.2e-05 72_[+5] chr1:10754869-10754949 5.2e-05 72_[+5] chr7:150756612-150756692 6.9e-05 1_[+5]_71 chr1:9884163-9884243 8.6e-05 44_[+5]_28 chr22:31741990-31742070 0.00012 33_[+5]_39 chr8:142402102-142402182 0.00012 5_[+5]_67 chr9:117160394-117160474 0.00012 69_[+5]_3 chr19:50658904-50658984 0.00014 69_[+5]_3 chr7:116593779-116593859 0.00017 7_[+5]_65 chr7:10819881-10819961 0.00022 28_[+5]_44 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CGCCSCCG MEME-5 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF CGCCSCCG width=8 seqs=24 chr18:74534415-74534495 ( 9) CGCCGCCG 1 chr10:98592493-98592573 ( 10) CGCCGCCG 1 chr11:46143053-46143133 ( 43) CGCCGCCG 1 chr1:40367551-40367631 ( 13) CGCCGCCG 1 chr17:44344236-44344316 ( 71) CGCCGCCG 1 chr19:4400579-4400659 ( 5) CGCCCCCG 1 chr8:74659179-74659259 ( 11) CGCCCCCG 1 chr18:5296137-5296217 ( 63) CGCCCCCG 1 chr9:101558826-101558906 ( 1) CGCCCCCG 1 chr4:1242610-1242690 ( 11) CGCCCCCG 1 chr19:35759327-35759407 ( 19) CGCCCCCG 1 chr11:925770-925850 ( 22) GGCCGCCG 1 chr6:69345070-69345150 ( 37) GGCCGCCG 1 chr11:78128913-78128993 ( 65) GGCCGCCG 1 chr11:13299091-13299171 ( 73) GGCCGCCG 1 chr1:10754869-10754949 ( 73) GGCCGCCG 1 chr7:150756612-150756692 ( 2) GGCCCCCG 1 chr1:9884163-9884243 ( 45) CGCCTCCG 1 chr22:31741990-31742070 ( 34) CGCCGCGG 1 chr8:142402102-142402182 ( 6) CGCGGCCG 1 chr9:117160394-117160474 ( 70) CGCGGCCG 1 chr19:50658904-50658984 ( 70) GGCCTCCG 1 chr7:116593779-116593859 ( 8) CGCCCCGG 1 chr7:10819881-10819961 ( 29) CGCCGCCT 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CGCCSCCG MEME-5 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 18250 bayes= 10.6693 E= 1.0e+003 -1123 147 23 -1123 -1123 -1123 200 -1123 -1123 197 -1123 -1123 -1123 184 -158 -1123 -1123 38 122 -157 -1123 197 -1123 -1123 -1123 184 -158 -1123 -1123 -1123 194 -257 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CGCCSCCG MEME-5 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 24 E= 1.0e+003 0.000000 0.708333 0.291667 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.916667 0.083333 0.000000 0.000000 0.333333 0.583333 0.083333 0.000000 1.000000 0.000000 0.000000 0.000000 0.916667 0.083333 0.000000 0.000000 0.000000 0.958333 0.041667 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CGCCSCCG MEME-5 regular expression -------------------------------------------------------------------------------- [CG]GCC[GC]CCG -------------------------------------------------------------------------------- Time 19.27 secs. ******************************************************************************** ******************************************************************************** SUMMARY OF MOTIFS ******************************************************************************** -------------------------------------------------------------------------------- Combined block diagrams: non-overlapping sites with p-value < 0.0001 -------------------------------------------------------------------------------- SEQUENCE NAME COMBINED P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr1:61658916-61658996 2.29e-04 18_[+4(2.89e-05)]_8_[+1(2.86e-05)]_\ 38 chr17:14235143-14235223 1.09e-02 21_[+4(5.82e-05)]_36_[+4(8.72e-05)]_\ 7 chr12:56140207-56140287 8.17e-01 80 chr8:131762003-131762083 2.54e-02 25_[+1(2.86e-05)]_47 chr4:89835759-89835839 5.64e-01 80 chr21:45166235-45166315 1.52e-02 28_[+4(8.72e-05)]_19_[+2(9.20e-05)]_\ 5_[+2(6.10e-05)]_4 chr6:27255833-27255913 2.09e-02 42_[+4(1.42e-05)]_30 chr5:126015317-126015397 2.13e-02 29_[+1(2.86e-05)]_43 chr3:186306560-186306640 8.71e-01 80 chr15:93419351-93419431 2.56e-01 26_[+2(6.10e-05)]_46 chr19:49639500-49639580 3.86e-02 57_[+1(7.15e-05)]_15 chr10:30723859-30723939 6.61e-03 68_[+1(1.42e-05)]_4 chr9:4618858-4618938 8.82e-03 31_[+1(2.86e-05)]_41 chr4:105372930-105373010 4.11e-02 53_[+1(1.42e-05)]_19 chr22:39266327-39266407 4.54e-03 28_[+1(5.69e-05)]_44 chr11:112149771-11214985 2.62e-01 25_[+2(3.00e-05)]_47 chr6:150581350-150581430 1.29e-01 15_[+2(3.00e-05)]_57 chr3:139153097-139153177 3.98e-02 80 chr16:15766824-15766904 8.38e-02 22_[+2(6.10e-05)]_50 chr14:23030663-23030743 3.26e-02 43_[+1(2.86e-05)]_29 chr14:75949663-75949743 3.48e-01 34_[+2(6.10e-05)]_38 chr22:41105972-41106052 9.52e-02 80 chr6:31553903-31553983 4.70e-03 80 chr7:148413813-148413893 2.55e-01 31_[+2(3.00e-05)]_41 chr7:136642903-136642983 4.24e-02 58_[+1(2.86e-05)]_14 chr16:58485889-58485969 2.00e-02 26_[+1(5.69e-05)]_46 chr8:39797537-39797617 7.71e-02 62_[+1(9.99e-05)]_10 chr16:85169915-85169995 1.62e-02 56_[+1(5.69e-05)]_16 chr6:141151192-141151272 3.97e-02 21_[+2(3.00e-05)]_51 chr1:33684587-33684667 5.58e-02 80 chr6:13095429-13095509 1.19e-02 56_[+1(7.15e-05)]_16 chr9:99204259-99204339 1.32e-02 67_[+2(9.20e-05)]_5 chr3:171770357-171770437 3.32e-02 42_[+1(2.86e-05)]_30 chr3:141013385-141013465 8.83e-02 18_[+2(3.00e-05)]_54 chr20:43223446-43223526 7.77e-01 80 chr6:134679490-134679570 4.84e-02 80 chr16:81742573-81742653 6.31e-03 68_[+1(5.69e-05)]_4 chr6:82980692-82980772 4.23e-02 51_[+4(5.82e-05)]_21 chr1:120510819-120510899 1.69e-01 80 chr17:16945144-16945224 8.17e-01 80 chr6:6919033-6919113 1.79e-02 64_[+4(4.33e-05)]_8 chr6:126240136-126240216 2.19e-02 33_[+1(5.69e-05)]_15_[+1(5.69e-05)]_\ 16 chrX:150267690-150267770 1.30e-02 41_[+4(8.72e-05)]_21_[+1(4.29e-05)]_\ 2 chr19:3369638-3369718 2.99e-02 80 chrX:65225409-65225489 2.64e-03 32_[+1(2.86e-05)]_7_[+4(1.42e-05)]_\ 25 chr13:42833910-42833990 7.69e-01 80 chr6:20470363-20470443 9.88e-01 80 chr11:19977343-19977423 5.53e-02 47_[+1(4.29e-05)]_25 chr7:157127673-157127753 4.11e-02 34_[+1(1.42e-05)]_38 chr6:27879874-27879954 3.53e-02 80 chr7:10819881-10819961 2.05e-02 80 chr1:160254422-160254502 8.47e-01 80 chr12:123998514-12399859 3.39e-01 80 chr6:56580769-56580849 7.65e-02 36_[+2(3.00e-05)]_36 chr1:174202000-174202080 3.75e-01 45_[+2(9.20e-05)]_27 chr19:17331061-17331141 2.95e-03 80 chr10:80792484-80792564 5.26e-01 80 chr19:35917674-35917754 1.31e-01 80 chr4:159677496-159677576 5.24e-02 30_[+4(4.33e-05)]_42 chr11:112149979-11215005 3.64e-01 7_[+2(6.10e-05)]_65 chr20:18265614-18265694 2.20e-02 31_[+1(5.69e-05)]_41 chr10:72338123-72338203 2.35e-02 33_[+1(4.29e-05)]_39 chr6:82980892-82980972 1.80e-01 80 chr13:110368287-11036836 2.61e-03 17_[+1(1.42e-05)]_32_[+4(5.82e-05)]_\ 15 chr18:20616933-20617013 2.71e-01 80 chr6:134864194-134864274 4.47e-02 27_[+1(1.42e-05)]_45 chr5:112267241-112267321 8.99e-01 80 chr12:76225446-76225526 2.83e-02 7_[+4(2.89e-05)]_65 chr19:50658904-50658984 1.89e-01 80 chr1:246743307-246743387 4.82e-02 80 chr6:17702249-17702329 1.76e-02 58_[+4(1.42e-05)]_14 chr4:141926615-141926695 3.63e-02 54_[+1(4.29e-05)]_18 chrX:49023106-49023186 1.33e-01 31_[+2(3.00e-05)]_41 chr15:96021118-96021198 2.90e-02 32_[+1(4.29e-05)]_40 chr14:99941723-99941803 7.45e-03 31_[+1(1.42e-05)]_41 chr10:77796233-77796313 7.58e-01 80 chr2:129112338-129112418 4.93e-02 42_[+1(2.86e-05)]_30 chr1:181069055-181069135 2.22e-01 80 chr1:201482293-201482373 1.10e-02 51_[+2(6.10e-05)]_21 chr3:136422377-136422457 2.27e-02 10_[+2(3.00e-05)]_62 chr3:185220856-185220936 2.73e-02 1_[+1(5.69e-05)]_71 chr17:1215672-1215752 5.35e-02 27_[+1(2.86e-05)]_45 chr1:236959359-236959439 2.88e-03 63_[+1(9.99e-05)]_9 chr6:21404924-21405004 1.68e-03 80 chr17:36833491-36833571 9.86e-03 64_[+1(1.42e-05)]_8 chr1:33659058-33659138 9.78e-02 22_[+1(7.15e-05)]_12_[+1(9.99e-05)]_\ 30 chr1:8434997-8435077 1.68e-01 10_[+2(9.20e-05)]_62 chr21:44748293-44748373 8.78e-01 80 chr12:131648835-13164891 9.47e-01 80 chr11:75484802-75484882 4.74e-01 80 chr21:30590290-30590370 3.68e-01 57_[+2(9.20e-05)]_15 chr1:39339292-39339372 4.67e-04 23_[+1(4.29e-05)]_49 chr6:138303540-138303620 9.10e-01 80 chr8:62074858-62074938 1.84e-02 8_[+2(3.00e-05)]_64 chr6:152000392-152000472 3.86e-01 80 chr5:126363082-126363162 1.81e-03 26_[+1(1.42e-05)]_12_[+4(7.24e-05)]_\ 26 chr1:165835362-165835442 6.82e-01 80 chr19:6652928-6653008 3.37e-02 80 chr17:56757267-56757347 2.86e-01 80 chr7:5572608-5572688 5.60e-02 35_[+1(4.29e-05)]_37 chr1:151357102-151357182 2.95e-02 2_[+4(2.89e-05)]_70 chr18:12247041-12247121 2.51e-01 80 chr12:95009835-95009915 1.64e-01 80 chr1:160881451-160881531 2.34e-01 80 chr10:51593936-51594016 7.83e-02 80 chr2:114030696-114030776 1.21e-01 45_[+1(4.29e-05)]_27 chr9:99204460-99204540 3.38e-01 80 chr1:116332910-116332990 4.12e-01 36_[+2(9.20e-05)]_36 chr16:12367063-12367143 9.54e-02 40_[+2(3.00e-05)]_32 chr1:120402348-120402428 6.01e-01 80 chr10:3936374-3936454 2.29e-01 18_[+2(3.00e-05)]_54 chr12:56967291-56967371 1.70e-03 2_[+4(1.42e-05)]_70 chr12:127568111-12756819 1.42e-01 41_[+2(6.10e-05)]_31 chr9:129708101-129708181 1.47e-01 80 chr14:88459615-88459695 5.85e-06 39_[+1(8.57e-05)]_8_[+2(3.00e-05)]_\ 3_[+3(8.42e-05)]_6 chr8:129289704-129289784 4.20e-01 80 chr2:12402529-12402609 1.35e-01 28_[+2(3.00e-05)]_44 chr19:50877964-50878044 5.22e-01 80 chr10:25406930-25407010 4.90e-01 80 chr19:35759327-35759407 9.54e-04 4_[+3(1.68e-05)]_6_[+5(3.48e-05)]_\ 12_[+3(1.68e-05)]_34 chr17:56357-56437 6.99e-01 80 chr2:96855076-96855156 1.58e-01 22_[+2(3.00e-05)]_50 chr6:161815012-161815092 7.55e-02 68_[+1(7.15e-05)]_4 chr1:145059006-145059086 8.74e-01 80 chr7:86633923-86634003 1.00e-01 36_[+2(3.00e-05)]_36 chr2:74759491-74759571 7.98e-01 80 chr19:42052809-42052889 3.35e-01 80 chr16:28550207-28550287 3.03e-01 48_[+2(9.20e-05)]_24 chr17:65989806-65989886 3.40e-01 80 chr8:142191430-142191510 9.00e-01 80 chr9:117160394-117160474 5.03e-04 [+1(1.42e-05)]_72 chr10:92681125-92681205 1.79e-02 33_[+2(3.00e-05)]_39 chr4:77064-77144 2.52e-01 15_[+2(3.00e-05)]_24_[+2(6.10e-05)]_\ 25 chr1:10754869-10754949 3.74e-03 44_[+3(3.40e-05)]_20_[+5(5.15e-05)] chr17:27253163-27253243 1.75e-01 4_[+2(6.10e-05)]_68 chr2:86202693-86202773 6.33e-02 21_[+2(9.20e-05)]_51 chr12:123365508-12336558 2.07e-02 59_[+1(1.42e-05)]_13 chr16:16092638-16092718 2.08e-01 80 chrX:119019972-119020052 9.99e-01 80 chr1:21780666-21780746 3.43e-01 54_[+2(6.10e-05)]_18 chr4:1242610-1242690 2.80e-03 10_[+5(3.48e-05)]_7_[+3(3.40e-05)]_\ 23_[+3(3.40e-05)]_8_[+3(1.68e-05)] chr1:24836498-24836578 9.38e-03 30_[+2(3.00e-05)]_42 chr12:122124721-12212480 4.82e-02 57_[+1(4.29e-05)]_15 chr12:114050066-11405014 8.29e-01 80 chr12:120339895-12033997 4.24e-01 80 chr7:99532837-99532917 1.77e-02 40_[+1(5.69e-05)]_32 chr20:5640418-5640498 3.88e-01 80 chr22:39181705-39181785 1.46e-01 15_[+2(6.10e-05)]_57 chr19:47322193-47322273 6.52e-01 80 chr2:10091583-10091663 3.31e-02 54_[+5(6.87e-05)]_18 chr19:39146992-39147072 1.75e-02 29_[+2(3.00e-05)]_43 chrX:65225617-65225697 6.40e-01 80 chr1:32423297-32423377 2.10e-01 1_[+2(6.10e-05)]_71 chr5:96077886-96077966 1.02e-02 32_[+1(2.86e-05)]_40 chr6:15400306-15400386 3.27e-02 48_[+1(4.29e-05)]_24 chr1:155057284-155057364 3.57e-03 80 chr7:128863688-128863768 9.23e-01 80 chr10:49638598-49638678 2.62e-02 34_[+1(1.42e-05)]_38 chr11:73278320-73278400 3.28e-02 40_[+1(2.86e-05)]_32 chr13:114029235-11402931 3.28e-02 51_[+1(8.57e-05)]_21 chr12:1769654-1769734 1.99e-02 56_[+1(5.69e-05)]_16 chr17:44344236-44344316 1.51e-03 20_[+3(1.68e-05)]_32_[+3(1.68e-05)]_\ 2_[+5(1.72e-05)]_2 chr2:234766582-234766662 3.45e-03 35_[+4(1.42e-05)]_37 chr12:112824417-11282449 1.37e-02 25_[+2(9.20e-05)]_47 chr11:13299091-13299171 4.83e-03 50_[+3(1.68e-05)]_14_[+5(5.15e-05)] chr6:27248091-27248171 6.37e-03 57_[+1(2.86e-05)]_15 chr7:150756612-150756692 2.67e-02 1_[+5(6.87e-05)]_71 chr7:75563852-75563932 3.31e-02 44_[+1(5.69e-05)]_28 chr1:168254845-168254925 2.62e-01 36_[+2(6.10e-05)]_9_[+2(6.10e-05)]_\ 19 chr1:9884163-9884243 6.20e-03 15_[+3(1.68e-05)]_17_[+3(5.11e-05)]_\ 32 chr19:11071621-11071701 4.29e-02 18_[+3(1.68e-05)]_54 chr1:166402068-166402148 5.52e-02 80 chr15:99191695-99191775 8.86e-02 49_[+3(1.68e-05)]_[+3(1.68e-05)]_15 chr3:122920835-122920915 1.87e-01 80 chr1:153522551-153522631 9.16e-03 52_[+4(4.33e-05)]_20 chr7:7140089-7140169 5.32e-01 80 chr16:75182736-75182816 5.41e-02 45_[+2(9.20e-05)]_27 chr9:101558826-101558906 7.60e-03 [+5(3.48e-05)]_33_[+3(3.40e-05)]_1_\ [+3(5.11e-05)]_22 chr4:10187546-10187626 1.60e-01 42_[+4(7.24e-05)]_30 chr22:17840428-17840508 5.25e-03 80 chr15:90749360-90749440 1.71e-01 80 chr11:78128913-78128993 6.05e-03 12_[+3(1.68e-05)]_44_[+5(5.15e-05)]_\ 8 chr12:127395340-12739542 8.71e-02 15_[+2(3.00e-05)]_57 chr21:30277803-30277883 1.78e-02 32_[+1(2.86e-05)]_40 chr6:24668943-24669023 9.80e-01 80 chr22:21410343-21410423 2.20e-01 80 chr1:40367551-40367631 2.24e-03 12_[+5(1.72e-05)]_34_[+3(1.68e-05)]_\ 10_[+3(8.42e-05)] chr17:76237681-76237761 9.75e-01 80 chr2:128568299-128568379 3.04e-01 80 chr12:71144395-71144475 2.20e-02 46_[+2(9.20e-05)]_26 chr6:35741260-35741340 6.58e-03 46_[+4(1.42e-05)]_26 chr1:181875030-181875110 3.26e-03 9_[+1(1.42e-05)]_63 chr4:48856011-48856091 1.42e-01 80 chr8:2170381-2170461 9.58e-01 80 chr15:83838011-83838091 7.23e-03 46_[+4(1.42e-05)]_26 chr19:35917954-35918034 7.75e-01 80 chr1:85666808-85666888 3.88e-01 80 chrX:131029193-131029273 6.92e-02 40_[+2(9.20e-05)]_32 chr11:46143053-46143133 4.62e-03 2_[+3(3.40e-05)]_29_[+5(1.72e-05)]_\ 1_[+5(1.72e-05)]_4_[+5(3.48e-05)]_12 chr10:124671569-12467164 9.51e-01 80 chr10:4868254-4868334 5.71e-01 80 chr8:142402102-142402182 1.09e-02 29_[+3(1.68e-05)]_43 chr19:50094705-50094785 1.93e-04 80 chr7:116593779-116593859 2.22e-02 30_[+3(6.75e-05)]_42 chr6:69345070-69345150 6.12e-03 11_[+3(1.68e-05)]_17_[+5(5.15e-05)]_\ 36 chr7:135569285-135569365 1.81e-01 2_[+2(3.00e-05)]_70 chr2:159926196-159926276 1.18e-02 16_[+1(5.69e-05)]_56 chr5:150114258-150114338 2.18e-01 80 chr1:156968708-156968788 7.01e-01 80 chr17:61072539-61072619 9.42e-01 80 chr18:5296137-5296217 6.99e-05 9_[+4(4.33e-05)]_45_[+5(3.48e-05)]_\ 10 chr19:44293360-44293440 9.60e-01 80 chr8:8871033-8871113 9.28e-01 80 chr1:202913610-202913690 1.82e-02 35_[+1(4.29e-05)]_37 chr22:31741990-31742070 4.47e-03 23_[+3(1.68e-05)]_49 chr8:124629018-124629098 3.07e-01 80 chr16:48419303-48419383 5.64e-03 33_[+5(3.48e-05)]_39 chr11:221059-221139 6.04e-01 80 chr7:130134453-130134533 5.27e-02 10_[+4(1.42e-05)]_62 chr22:22378266-22378346 7.00e-01 80 chr8:74659179-74659259 4.67e-03 10_[+5(3.48e-05)]_39_[+3(1.68e-05)]_\ 15 chr9:37937027-37937107 7.83e-02 38_[+2(6.10e-05)]_34 chr8:110411571-110411651 2.26e-02 17_[+4(2.89e-05)]_55 chr17:67099985-67100065 1.84e-03 55_[+1(8.57e-05)]_3_[+2(3.00e-05)]_\ 6 chr19:4400579-4400659 2.71e-03 4_[+5(3.48e-05)]_5_[+3(1.68e-05)]_\ 20_[+3(5.11e-05)]_27 chr4:55252515-55252595 8.17e-01 80 chr7:130134655-130134735 9.30e-01 80 chr11:4006375-4006455 3.74e-02 80 chr7:127299181-127299261 5.87e-02 80 chr5:88179056-88179136 7.62e-03 5_[+3(1.68e-05)]_26_[+3(1.68e-05)]_\ 33 chr16:71501835-71501915 9.17e-01 80 chr11:925770-925850 1.87e-02 21_[+5(5.15e-05)]_8_[+3(8.42e-05)]_\ 35 chr3:14361200-14361280 1.28e-01 23_[+2(3.00e-05)]_49 chr10:134247986-13424806 3.23e-02 53_[+1(1.42e-05)]_19 chr15:63343723-63343803 1.73e-01 80 chr8:142011385-142011465 1.06e-02 14_[+3(1.68e-05)]_58 chr5:96377277-96377357 4.59e-01 80 chr10:98592493-98592573 3.40e-02 9_[+5(1.72e-05)]_63 chr20:10415800-10415880 9.36e-01 80 chr19:7627875-7627955 1.09e-01 80 chr17:77784013-77784093 1.60e-02 80 chr5:39077158-39077238 4.70e-01 80 chr2:181845152-181845232 4.61e-02 4_[+3(1.68e-05)]_54_[+3(6.75e-05)]_\ 6 chr6:150597497-150597577 5.43e-04 25_[+1(2.86e-05)]_47 chr12:105629335-10562941 8.41e-01 80 chr19:42463538-42463618 6.01e-01 80 chr18:74534415-74534495 8.72e-03 8_[+5(1.72e-05)]_34_[+5(3.48e-05)]_\ 22 chr11:76535448-76535528 6.33e-02 80 chr19:14779061-14779141 9.03e-03 17_[+1(5.69e-05)]_55 chr21:31070568-31070648 1.29e-01 80 -------------------------------------------------------------------------------- ******************************************************************************** ******************************************************************************** Stopped because requested number of motifs (5) found. ******************************************************************************** CPU: c22n08.farnam.hpc.yale.internal ********************************************************************************