******************************************************************************** MEME - Motif discovery tool ******************************************************************************** MEME version 5.3.3 (Release date: Sun Feb 7 15:39:52 2021 -0800) For further information on how to interpret these results please access https://meme-suite.org/meme. To get a copy of the MEME Suite software please access https://meme-suite.org. ******************************************************************************** ******************************************************************************** REFERENCE ******************************************************************************** If you use this program in your research, please cite: Timothy L. Bailey and Charles Elkan, "Fitting a mixture model by expectation maximization to discover motifs in biopolymers", Proceedings of the Second International Conference on Intelligent Systems for Molecular Biology, pp. 28-36, AAAI Press, Menlo Park, California, 1994. ******************************************************************************** ******************************************************************************** TRAINING SET ******************************************************************************** PRIMARY SEQUENCES= ../result/final_prediction/K562/fasta/RankLinear0.6_40/ZNF644.fasta CONTROL SEQUENCES= --none-- ALPHABET= ACGT Sequence name Weight Length Sequence name Weight Length ------------- ------ ------ ------------- ------ ------ chr7:46501015-46501095 1.0000 80 chr18:5295224-5295304 1.0000 80 chr19:35759373-35759453 1.0000 80 chr6:167368749-167368829 1.0000 80 chr17:65989759-65989839 1.0000 80 chr9:101558837-101558917 1.0000 80 chr6:69345089-69345169 1.0000 80 chr1:9884167-9884247 1.0000 80 chr1:10754789-10754869 1.0000 80 chr10:105726817-10572689 1.0000 80 chr8:61591213-61591293 1.0000 80 chr4:1242529-1242609 1.0000 80 chr4:117303971-117304051 1.0000 80 chr1:40367564-40367644 1.0000 80 chr5:151304251-151304331 1.0000 80 chr9:128845118-128845198 1.0000 80 chr2:72984387-72984467 1.0000 80 chr1:9884374-9884454 1.0000 80 chr17:44344246-44344326 1.0000 80 chr4:138889136-138889216 1.0000 80 chr7:150756604-150756684 1.0000 80 chr6:162785697-162785777 1.0000 80 chr5:108760276-108760356 1.0000 80 chr19:11071606-11071686 1.0000 80 chr8:74659190-74659270 1.0000 80 chr1:159147235-159147315 1.0000 80 chr10:124671558-12467163 1.0000 80 chr2:10091641-10091721 1.0000 80 chr4:55252651-55252731 1.0000 80 chr20:10415797-10415877 1.0000 80 chrX:503119-503199 1.0000 80 chr11:13299079-13299159 1.0000 80 chr15:32163011-32163091 1.0000 80 chr19:7627865-7627945 1.0000 80 chr7:98741737-98741817 1.0000 80 chr20:34681056-34681136 1.0000 80 chr1:20078999-20079079 1.0000 80 chr17:40428413-40428493 1.0000 80 chr11:78128947-78129027 1.0000 80 chr18:5296152-5296232 1.0000 80 chr16:71501806-71501886 1.0000 80 chr5:87547342-87547422 1.0000 80 chr11:70496571-70496651 1.0000 80 chr5:88179051-88179131 1.0000 80 chr9:126872742-126872822 1.0000 80 chrX:1021127-1021207 1.0000 80 chr13:109335302-10933538 1.0000 80 chr19:48901971-48902051 1.0000 80 chr16:88627291-88627371 1.0000 80 chr2:178603438-178603518 1.0000 80 chr8:74659389-74659469 1.0000 80 chr15:64162916-64162996 1.0000 80 chr19:55195882-55195962 1.0000 80 chr1:35390559-35390639 1.0000 80 chr15:75287984-75288064 1.0000 80 chr5:175224026-175224106 1.0000 80 chr17:42022805-42022885 1.0000 80 chr7:116593803-116593883 1.0000 80 chr11:221025-221105 1.0000 80 chr6:24756954-24757034 1.0000 80 chr7:73867179-73867259 1.0000 80 chr15:65529649-65529729 1.0000 80 chr1:63833204-63833284 1.0000 80 chr3:31514553-31514633 1.0000 80 chr8:142402118-142402198 1.0000 80 chrX:109561377-109561457 1.0000 80 chr4:15003888-15003968 1.0000 80 chr17:77784002-77784082 1.0000 80 chr13:64848842-64848922 1.0000 80 chr4:25724785-25724865 1.0000 80 chr12:52345333-52345413 1.0000 80 chr7:30711611-30711691 1.0000 80 chr20:9006514-9006594 1.0000 80 chr8:111907141-111907221 1.0000 80 chr1:67395844-67395924 1.0000 80 chr15:101874346-10187442 1.0000 80 chr2:205219402-205219482 1.0000 80 chr1:223079691-223079771 1.0000 80 chr3:48699238-48699318 1.0000 80 chr17:42022606-42022686 1.0000 80 chr1:234690654-234690734 1.0000 80 chr11:20000338-20000418 1.0000 80 chr20:35012547-35012627 1.0000 80 chr2:42064262-42064342 1.0000 80 chr1:11610867-11610947 1.0000 80 chr21:46237992-46238072 1.0000 80 chr16:29794592-29794672 1.0000 80 chr7:143067422-143067502 1.0000 80 chr7:22219118-22219198 1.0000 80 chr20:36255539-36255619 1.0000 80 chr12:6722789-6722869 1.0000 80 chr8:10847816-10847896 1.0000 80 chr19:52290341-52290421 1.0000 80 chr1:38230095-38230175 1.0000 80 chr2:2617236-2617316 1.0000 80 chr1:18748640-18748720 1.0000 80 chr8:142726256-142726336 1.0000 80 chr14:103017349-10301742 1.0000 80 chr6:134612452-134612532 1.0000 80 chr11:65626907-65626987 1.0000 80 chr14:36004540-36004620 1.0000 80 chr8:38854395-38854475 1.0000 80 chr12:31771224-31771304 1.0000 80 chr3:43729870-43729950 1.0000 80 chr7:106437337-106437417 1.0000 80 chr19:4400574-4400654 1.0000 80 chrX:62654805-62654885 1.0000 80 chr3:39363596-39363676 1.0000 80 chr18:34850167-34850247 1.0000 80 chr16:12704982-12705062 1.0000 80 chr10:75939023-75939103 1.0000 80 chr11:925768-925848 1.0000 80 chr19:4342890-4342970 1.0000 80 chr9:136933194-136933274 1.0000 80 chr15:75287781-75287861 1.0000 80 chr2:189099528-189099608 1.0000 80 chr15:68316158-68316238 1.0000 80 chr12:70484894-70484974 1.0000 80 chr8:94886428-94886508 1.0000 80 chr20:62694375-62694455 1.0000 80 chr20:39577456-39577536 1.0000 80 chr1:179015855-179015935 1.0000 80 chr3:127451789-127451869 1.0000 80 chr20:46768463-46768543 1.0000 80 chr4:84838828-84838908 1.0000 80 chr20:30556334-30556414 1.0000 80 chr1:158788540-158788620 1.0000 80 chr1:222135866-222135946 1.0000 80 chr2:181845178-181845258 1.0000 80 chr4:10185209-10185289 1.0000 80 chr17:77007697-77007777 1.0000 80 chr3:135232355-135232435 1.0000 80 chr5:176560660-176560740 1.0000 80 chr14:64830135-64830215 1.0000 80 chr10:3933019-3933099 1.0000 80 chr22:39745869-39745949 1.0000 80 chr11:63302431-63302511 1.0000 80 chr3:44482956-44483036 1.0000 80 chr3:38847407-38847487 1.0000 80 chr5:178977756-178977836 1.0000 80 chr12:88535941-88536021 1.0000 80 chr10:30714401-30714481 1.0000 80 chr15:45876393-45876473 1.0000 80 chr8:98774821-98774901 1.0000 80 chr1:55359170-55359250 1.0000 80 chr9:99445947-99446027 1.0000 80 chrX:3619598-3619678 1.0000 80 chr1:247095508-247095588 1.0000 80 chr17:47154389-47154469 1.0000 80 chr1:46768571-46768651 1.0000 80 chr4:1242739-1242819 1.0000 80 chr15:68193157-68193237 1.0000 80 chr3:101360785-101360865 1.0000 80 chr17:40687501-40687581 1.0000 80 chr1:169862837-169862917 1.0000 80 chr10:98592384-98592464 1.0000 80 chr16:49192111-49192191 1.0000 80 chr17:46903269-46903349 1.0000 80 chr1:223920424-223920504 1.0000 80 chr1:204196625-204196705 1.0000 80 chr19:49148185-49148265 1.0000 80 chr6:164758825-164758905 1.0000 80 chr14:103000336-10300041 1.0000 80 chr10:26051034-26051114 1.0000 80 chr2:192464328-192464408 1.0000 80 chr17:48423470-48423550 1.0000 80 chrX:43187756-43187836 1.0000 80 chr5:176264780-176264860 1.0000 80 chr22:22139144-22139224 1.0000 80 chr21:37700044-37700124 1.0000 80 chr3:43728829-43728909 1.0000 80 chr14:58765071-58765151 1.0000 80 chr16:1344225-1344305 1.0000 80 chr11:97844199-97844279 1.0000 80 chr12:131847317-13184739 1.0000 80 chr18:5296364-5296444 1.0000 80 chr3:39363917-39363997 1.0000 80 chr18:74534471-74534551 1.0000 80 chr1:247531168-247531248 1.0000 80 chr3:101362782-101362862 1.0000 80 chr17:35766964-35767044 1.0000 80 chr6:15905125-15905205 1.0000 80 chr1:26376524-26376604 1.0000 80 chr19:29012976-29013056 1.0000 80 chr1:211729793-211729873 1.0000 80 chr1:212651649-212651729 1.0000 80 chr16:10419939-10420019 1.0000 80 chr7:123139780-123139860 1.0000 80 chr1:160518888-160518968 1.0000 80 chr6:111140839-111140919 1.0000 80 chr7:73574356-73574436 1.0000 80 chr6:158176274-158176354 1.0000 80 chr21:47939273-47939353 1.0000 80 chr1:118364601-118364681 1.0000 80 chr12:33099601-33099681 1.0000 80 chr16:70473179-70473259 1.0000 80 chr9:102064168-102064248 1.0000 80 chr8:29952231-29952311 1.0000 80 chr17:26335704-26335784 1.0000 80 chr16:87840352-87840432 1.0000 80 chr12:55413756-55413836 1.0000 80 chrX:102353542-102353622 1.0000 80 chr4:185261031-185261111 1.0000 80 chr1:2457658-2457738 1.0000 80 chr12:94332336-94332416 1.0000 80 chr9:99446155-99446235 1.0000 80 chr14:106267658-10626773 1.0000 80 chr16:2264910-2264990 1.0000 80 chr8:98775021-98775101 1.0000 80 chr1:230287913-230287993 1.0000 80 chr3:178818601-178818681 1.0000 80 chr12:131355911-13135599 1.0000 80 chr3:20365116-20365196 1.0000 80 chr3:99495979-99496059 1.0000 80 chr20:61427757-61427837 1.0000 80 chr6:106253567-106253647 1.0000 80 chr8:101514071-101514151 1.0000 80 chr5:107867647-107867727 1.0000 80 chr3:50397066-50397146 1.0000 80 chr4:56608910-56608990 1.0000 80 chr1:155277120-155277200 1.0000 80 chr1:110574383-110574463 1.0000 80 chr9:99183100-99183180 1.0000 80 chr14:31711921-31712001 1.0000 80 chr3:53389138-53389218 1.0000 80 chr8:41676487-41676567 1.0000 80 chr20:49955665-49955745 1.0000 80 chr19:47354293-47354373 1.0000 80 chr12:2861923-2862003 1.0000 80 chr3:193308487-193308567 1.0000 80 chr1:179332675-179332755 1.0000 80 chr1:236515251-236515331 1.0000 80 chr5:5586023-5586103 1.0000 80 chr1:36864303-36864383 1.0000 80 chr15:101874675-10187475 1.0000 80 chr7:106408228-106408308 1.0000 80 chr18:43742167-43742247 1.0000 80 chr9:139969527-139969607 1.0000 80 chr1:246274286-246274366 1.0000 80 chr6:43215220-43215300 1.0000 80 chr1:21113825-21113905 1.0000 80 chr2:39695294-39695374 1.0000 80 chr8:131044868-131044948 1.0000 80 chr7:156931463-156931543 1.0000 80 chr10:30841292-30841372 1.0000 80 chr6:161632082-161632162 1.0000 80 chr4:151238168-151238248 1.0000 80 chr12:116994337-11699441 1.0000 80 chr13:27712813-27712893 1.0000 80 chr17:37170448-37170528 1.0000 80 ******************************************************************************** ******************************************************************************** COMMAND LINE SUMMARY ******************************************************************************** This information can also be useful in the event you wish to report a problem with the MEME software. command: meme -oc ../result/final_prediction/K562/inference_raw/MEME/RankLinear0.6_40_ZNF644/ -dna -nmotifs 5 -w 8 -maxsize 250000 -nostatus ../result/final_prediction/K562/fasta/RankLinear0.6_40/ZNF644.fasta model: mod= zoops nmotifs= 5 evt= inf objective function: em= E-value of product of p-values starts= E-value of product of p-values strands: + width: minw= 8 maxw= 8 nsites: minsites= 2 maxsites= 250 wnsites= 0.8 theta: spmap= uni spfuzz= 0.5 em: prior= dirichlet b= 0.01 maxiter= 50 distance= 1e-05 trim: wg= 11 ws= 1 endgaps= yes data: n= 20000 N= 250 sample: seed= 0 hsfrac= 0 searchsize= 20000 norand= no csites= 1000 Letter frequencies in dataset: A 0.214 C 0.28 G 0.284 T 0.221 Background letter frequencies (from file dataset with add-one prior applied): A 0.214 C 0.28 G 0.284 T 0.221 Background model order: 0 ******************************************************************************** ******************************************************************************** MOTIF AAGATGGA MEME-1 width = 8 sites = 60 llr = 589 E-value = 5.8e-068 ******************************************************************************** -------------------------------------------------------------------------------- Motif AAGATGGA MEME-1 Description -------------------------------------------------------------------------------- Simplified A aa2a::19 pos.-specific C :::::::1 probability G ::7::a9: matrix T ::::a::: bits 2.2 ** * 2.0 ** ** 1.8 ** ** 1.6 ** ***** Relative 1.3 ** ***** Entropy 1.1 ** ***** (14.2 bits) 0.9 ******** 0.7 ******** 0.4 ******** 0.2 ******** 0.0 -------- Multilevel AAGATGGA consensus A sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AAGATGGA MEME-1 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr12:116994337-11699441 14 1.06e-05 gctcctattc aagatgga gttgctcttg chr6:161632082-161632162 12 1.06e-05 ggtaaaaagc aagatgga gtcagttacg chr7:106408228-106408308 16 1.06e-05 cgtgaaatgt aagatgga gtcttttttt chr1:179332675-179332755 35 1.06e-05 gtgcctattc aagatgga gttgctatgg chr3:193308487-193308567 21 1.06e-05 ggtcagaagc aagatgga gtcaactatg chr20:49955665-49955745 18 1.06e-05 gcccctattc aagatgga gtcactctgg chr3:99495979-99496059 36 1.06e-05 gcccctattc aagatgga gttgctctgg chr1:230287913-230287993 32 1.06e-05 actcctattc aagatgga gttgctttgg chr4:185261031-185261111 29 1.06e-05 gcctctgctc aagatgga gtcactctgg chr21:47939273-47939353 25 1.06e-05 gcccctattc aagatgga gttgctctgg chr6:158176274-158176354 34 1.06e-05 ctctgtattc aagatgga gttgctctgg chr3:39363917-39363997 14 1.06e-05 aaaaaaaaaa aagatgga gtcggttagg chr12:131847317-13184739 8 1.06e-05 cttgttc aagatgga gtcactctgg chr16:1344225-1344305 21 1.06e-05 agccccattc aagatgga gttgctctgg chr10:26051034-26051114 6 1.06e-05 tattc aagatgga gttgctgtgg chr14:103000336-10300041 10 1.06e-05 cccctgctc aagatgga gttgctctgg chr17:46903269-46903349 36 1.06e-05 gcccctattc aagatgga gtcactctgg chr17:40687501-40687581 8 1.06e-05 cctgttc aagatgga gtcgctctgg chr15:68193157-68193237 41 1.06e-05 ggcactattc aagatgga gttgctctgg chr17:47154389-47154469 28 1.06e-05 gcacttattc aagatgga gtcgctctgg chr15:45876393-45876473 35 1.06e-05 agtcctattc aagatgga gttgctctgg chr10:30714401-30714481 28 1.06e-05 agctgtattc aagatgga gtcgctcttg chr3:44482956-44483036 30 1.06e-05 ttccctattc aagatgga gtcactctgg chr20:46768463-46768543 18 1.06e-05 gcccctattc aagatgga gttgctctgg chr20:39577456-39577536 32 1.06e-05 gccgctattc aagatgga gttgctctgg chr8:94886428-94886508 14 1.06e-05 ccccctattc aagatgga gtcactctag chr15:68316158-68316238 35 1.06e-05 ggctagaagc aagatgga gtcagccatg chr3:39363596-39363676 17 1.06e-05 ggttaaaacc aagatgga gtcggtgggc chr7:106437337-106437417 22 1.06e-05 gcttctattc aagatgga gttgctccag chr2:205219402-205219482 30 1.06e-05 gtctttttct aagatgga gttacttatg chr7:73867179-73867259 41 1.06e-05 ggctggaagc aagatgga gtcagccacg chr6:24756954-24757034 58 1.06e-05 ggccctattc aagatgga gttgctctgg chr13:109335302-10933538 12 1.06e-05 gtctttttct aagatgga gccactaatg chr4:138889136-138889216 38 1.06e-05 ggttagaagc aagatgga gtcagttagg chr8:131044868-131044948 3 1.86e-05 tc aaaatgga gtcactaagg chr1:36864303-36864383 20 1.86e-05 caacagaacc aaaatgga gtcactcatg chrX:102353542-102353622 14 1.86e-05 TAAATGTCTC AAAATGGA GTCACTTATG chr8:29952231-29952311 25 1.86e-05 cgaagaaacc aaaatgga gtctgtcccg chr11:63302431-63302511 25 1.86e-05 TAAATATTTC AAAATGGA GTCACTTACG chr12:31771224-31771304 34 1.86e-05 accaaaaatc aaaatgga gtcacccatg chr6:134612452-134612532 37 1.86e-05 actaaaaatc aaaatgga gtcacctatg chr16:29794592-29794672 18 1.86e-05 tatcagtatc aaaatgga gtcacatatg chr2:72984387-72984467 19 1.86e-05 taacaataac aaaatgga gtcacttatg chr1:222135866-222135946 22 2.66e-05 gattttgggg aagatgaa ataacaactt chr8:98775021-98775101 50 4.05e-05 catcaaaacc aagatggc gacaaaagtg chr4:84838828-84838908 58 4.05e-05 ATAtgtaaga aagatggc tgcactttag chr8:41676487-41676567 22 4.88e-05 gtaacaaagc aatatgga gtaactcaag chr13:64848842-64848922 19 4.88e-05 gaggtgaaac aatatgga gtaactcagg chr6:111140839-111140919 9 5.68e-05 ggggcatc aagataga aatAACtgtc chr20:35012547-35012627 73 5.68e-05 CGTGGTGCTG AAGATAGA chr14:106267658-10626773 4 6.28e-05 AGA AAAATGAA AGCAAAACCA chrX:3619598-3619678 70 6.28e-05 ggagctgggt aaaatgaa gct chr3:20365116-20365196 6 7.33e-05 ttgac aaaatggc gcagcttggg chrX:62654805-62654885 14 7.33e-05 ggcagtctgc aaaatggc gtggcttggg chr6:162785697-162785777 45 7.33e-05 TTTAAACCAG AAAATGGC TGCACAACTG chr17:48423470-48423550 29 8.42e-05 CCCGGGCAGG AAGATGGT GGCGAGCGCG chr2:2617236-2617316 20 8.42e-05 GAATGCAAGC AAGATGGT GCCAGGGCGC chr9:99446155-99446235 52 9.25e-05 TGAAGAAGAT AAGATTGA ATGGCTAAGT chr1:247531168-247531248 59 1.20e-04 atatttgaac aagaggga ctccatcttg chr4:10185209-10185289 44 1.37e-04 tgactggtat aagatgac atctcattgt -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AAGATGGA MEME-1 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr12:116994337-11699441 1.1e-05 13_[+1]_59 chr6:161632082-161632162 1.1e-05 11_[+1]_61 chr7:106408228-106408308 1.1e-05 15_[+1]_57 chr1:179332675-179332755 1.1e-05 34_[+1]_38 chr3:193308487-193308567 1.1e-05 20_[+1]_52 chr20:49955665-49955745 1.1e-05 17_[+1]_55 chr3:99495979-99496059 1.1e-05 35_[+1]_37 chr1:230287913-230287993 1.1e-05 31_[+1]_41 chr4:185261031-185261111 1.1e-05 28_[+1]_44 chr21:47939273-47939353 1.1e-05 24_[+1]_48 chr6:158176274-158176354 1.1e-05 33_[+1]_39 chr3:39363917-39363997 1.1e-05 13_[+1]_59 chr12:131847317-13184739 1.1e-05 7_[+1]_65 chr16:1344225-1344305 1.1e-05 20_[+1]_52 chr10:26051034-26051114 1.1e-05 5_[+1]_67 chr14:103000336-10300041 1.1e-05 9_[+1]_63 chr17:46903269-46903349 1.1e-05 35_[+1]_37 chr17:40687501-40687581 1.1e-05 7_[+1]_65 chr15:68193157-68193237 1.1e-05 40_[+1]_32 chr17:47154389-47154469 1.1e-05 27_[+1]_45 chr15:45876393-45876473 1.1e-05 34_[+1]_38 chr10:30714401-30714481 1.1e-05 27_[+1]_45 chr3:44482956-44483036 1.1e-05 29_[+1]_43 chr20:46768463-46768543 1.1e-05 17_[+1]_55 chr20:39577456-39577536 1.1e-05 31_[+1]_41 chr8:94886428-94886508 1.1e-05 13_[+1]_59 chr15:68316158-68316238 1.1e-05 34_[+1]_38 chr3:39363596-39363676 1.1e-05 16_[+1]_56 chr7:106437337-106437417 1.1e-05 21_[+1]_51 chr2:205219402-205219482 1.1e-05 29_[+1]_43 chr7:73867179-73867259 1.1e-05 40_[+1]_32 chr6:24756954-24757034 1.1e-05 57_[+1]_15 chr13:109335302-10933538 1.1e-05 11_[+1]_61 chr4:138889136-138889216 1.1e-05 37_[+1]_35 chr8:131044868-131044948 1.9e-05 2_[+1]_70 chr1:36864303-36864383 1.9e-05 19_[+1]_53 chrX:102353542-102353622 1.9e-05 13_[+1]_59 chr8:29952231-29952311 1.9e-05 24_[+1]_48 chr11:63302431-63302511 1.9e-05 24_[+1]_48 chr12:31771224-31771304 1.9e-05 33_[+1]_39 chr6:134612452-134612532 1.9e-05 36_[+1]_36 chr16:29794592-29794672 1.9e-05 17_[+1]_55 chr2:72984387-72984467 1.9e-05 18_[+1]_54 chr1:222135866-222135946 2.7e-05 21_[+1]_51 chr8:98775021-98775101 4.1e-05 49_[+1]_23 chr4:84838828-84838908 4.1e-05 57_[+1]_15 chr8:41676487-41676567 4.9e-05 21_[+1]_51 chr13:64848842-64848922 4.9e-05 18_[+1]_54 chr6:111140839-111140919 5.7e-05 8_[+1]_64 chr20:35012547-35012627 5.7e-05 72_[+1] chr14:106267658-10626773 6.3e-05 3_[+1]_69 chrX:3619598-3619678 6.3e-05 69_[+1]_3 chr3:20365116-20365196 7.3e-05 5_[+1]_67 chrX:62654805-62654885 7.3e-05 13_[+1]_59 chr6:162785697-162785777 7.3e-05 44_[+1]_28 chr17:48423470-48423550 8.4e-05 28_[+1]_44 chr2:2617236-2617316 8.4e-05 19_[+1]_53 chr9:99446155-99446235 9.2e-05 51_[+1]_21 chr1:247531168-247531248 0.00012 58_[+1]_14 chr4:10185209-10185289 0.00014 43_[+1]_29 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AAGATGGA MEME-1 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF AAGATGGA width=8 seqs=60 chr12:116994337-11699441 ( 14) AAGATGGA 1 chr6:161632082-161632162 ( 12) AAGATGGA 1 chr7:106408228-106408308 ( 16) AAGATGGA 1 chr1:179332675-179332755 ( 35) AAGATGGA 1 chr3:193308487-193308567 ( 21) AAGATGGA 1 chr20:49955665-49955745 ( 18) AAGATGGA 1 chr3:99495979-99496059 ( 36) AAGATGGA 1 chr1:230287913-230287993 ( 32) AAGATGGA 1 chr4:185261031-185261111 ( 29) AAGATGGA 1 chr21:47939273-47939353 ( 25) AAGATGGA 1 chr6:158176274-158176354 ( 34) AAGATGGA 1 chr3:39363917-39363997 ( 14) AAGATGGA 1 chr12:131847317-13184739 ( 8) AAGATGGA 1 chr16:1344225-1344305 ( 21) AAGATGGA 1 chr10:26051034-26051114 ( 6) AAGATGGA 1 chr14:103000336-10300041 ( 10) AAGATGGA 1 chr17:46903269-46903349 ( 36) AAGATGGA 1 chr17:40687501-40687581 ( 8) AAGATGGA 1 chr15:68193157-68193237 ( 41) AAGATGGA 1 chr17:47154389-47154469 ( 28) AAGATGGA 1 chr15:45876393-45876473 ( 35) AAGATGGA 1 chr10:30714401-30714481 ( 28) AAGATGGA 1 chr3:44482956-44483036 ( 30) AAGATGGA 1 chr20:46768463-46768543 ( 18) AAGATGGA 1 chr20:39577456-39577536 ( 32) AAGATGGA 1 chr8:94886428-94886508 ( 14) AAGATGGA 1 chr15:68316158-68316238 ( 35) AAGATGGA 1 chr3:39363596-39363676 ( 17) AAGATGGA 1 chr7:106437337-106437417 ( 22) AAGATGGA 1 chr2:205219402-205219482 ( 30) AAGATGGA 1 chr7:73867179-73867259 ( 41) AAGATGGA 1 chr6:24756954-24757034 ( 58) AAGATGGA 1 chr13:109335302-10933538 ( 12) AAGATGGA 1 chr4:138889136-138889216 ( 38) AAGATGGA 1 chr8:131044868-131044948 ( 3) AAAATGGA 1 chr1:36864303-36864383 ( 20) AAAATGGA 1 chrX:102353542-102353622 ( 14) AAAATGGA 1 chr8:29952231-29952311 ( 25) AAAATGGA 1 chr11:63302431-63302511 ( 25) AAAATGGA 1 chr12:31771224-31771304 ( 34) AAAATGGA 1 chr6:134612452-134612532 ( 37) AAAATGGA 1 chr16:29794592-29794672 ( 18) AAAATGGA 1 chr2:72984387-72984467 ( 19) AAAATGGA 1 chr1:222135866-222135946 ( 22) AAGATGAA 1 chr8:98775021-98775101 ( 50) AAGATGGC 1 chr4:84838828-84838908 ( 58) AAGATGGC 1 chr8:41676487-41676567 ( 22) AATATGGA 1 chr13:64848842-64848922 ( 19) AATATGGA 1 chr6:111140839-111140919 ( 9) AAGATAGA 1 chr20:35012547-35012627 ( 73) AAGATAGA 1 chr14:106267658-10626773 ( 4) AAAATGAA 1 chrX:3619598-3619678 ( 70) AAAATGAA 1 chr3:20365116-20365196 ( 6) AAAATGGC 1 chrX:62654805-62654885 ( 14) AAAATGGC 1 chr6:162785697-162785777 ( 45) AAAATGGC 1 chr17:48423470-48423550 ( 29) AAGATGGT 1 chr2:2617236-2617316 ( 20) AAGATGGT 1 chr9:99446155-99446235 ( 52) AAGATTGA 1 chr1:247531168-247531248 ( 59) AAGAGGGA 1 chr4:10185209-10185289 ( 44) AAGATGAC 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AAGATGGA MEME-1 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 18250 bayes= 8.91997 E= 5.8e-068 222 -1255 -1255 -1255 222 -1255 -1255 -1255 12 -1255 137 -273 222 -1255 -1255 -1255 -1255 -1255 -409 215 -268 -1255 174 -373 -168 -1255 171 -1255 202 -149 -1255 -273 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AAGATGGA MEME-1 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 60 E= 5.8e-068 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.233333 0.000000 0.733333 0.033333 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.016667 0.983333 0.033333 0.000000 0.950000 0.016667 0.066667 0.000000 0.933333 0.000000 0.866667 0.100000 0.000000 0.033333 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AAGATGGA MEME-1 regular expression -------------------------------------------------------------------------------- AA[GA]ATGGA -------------------------------------------------------------------------------- Time 4.82 secs. ******************************************************************************** ******************************************************************************** MOTIF TCCATCTT MEME-2 width = 8 sites = 57 llr = 534 E-value = 1.0e-051 ******************************************************************************** -------------------------------------------------------------------------------- Motif TCCATCTT MEME-2 Description -------------------------------------------------------------------------------- Simplified A :::a:1:: pos.-specific C :aa::6:: probability G 1::::21: matrix T 9:::a29a bits 2.2 * * 2.0 ** * 1.8 **** * 1.6 **** ** Relative 1.3 ***** ** Entropy 1.1 ***** ** (13.5 bits) 0.9 ***** ** 0.7 ***** ** 0.4 ***** ** 0.2 ******** 0.0 -------- Multilevel TCCATCTT consensus G sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TCCATCTT MEME-2 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr17:37170448-37170528 36 1.12e-05 cctaaccaac tccatctt gcttctaacc chr2:39695294-39695374 54 1.12e-05 ccagagcaac tccatctt gaataggagc chr9:139969527-139969607 55 1.12e-05 ccagagcaac tccatctt gaatgggagc chr1:155277120-155277200 39 1.12e-05 ccagagcaac tccatctt gaatagggac chr8:101514071-101514151 55 1.12e-05 catgagtgac tccatctt ggtttggtct chr9:102064168-102064248 53 1.12e-05 ccagagggac tccatctt gaacaggggc chr7:73574356-73574436 40 1.12e-05 caagagcagc tccatctt gaataggggc chr6:111140839-111140919 48 1.12e-05 ccacagtgac tccatctt gaatagggta chr7:123139780-123139860 54 1.12e-05 ccagagcaac tccatctt gaataggagc chr19:29012976-29013056 52 1.12e-05 ccagaacaac tccatctt gaataggagc chr1:247531168-247531248 68 1.12e-05 caagagggac tccatctt gaaga chr2:192464328-192464408 66 1.12e-05 ccagagcaac tccatctt gaatagg chr6:164758825-164758905 48 1.12e-05 ccagagcgac tccatctt gaataggggc chrX:3619598-3619678 47 1.12e-05 ccagagcaac tccatctt gaagaggagc chr8:98774821-98774901 73 1.12e-05 ccacagtgac tccatctt chr10:3933019-3933099 30 1.12e-05 ctagggcgac tccatctt aaatagagag chr14:64830135-64830215 35 1.12e-05 ccagagcaac tccatctt gaataggggc chr3:127451789-127451869 39 1.12e-05 ccagagcaac tccatctt gaacgggggc chr10:75939023-75939103 57 1.12e-05 ccagagcgac tccatctt gaatagggtc chr16:12704982-12705062 50 1.12e-05 ccagagcaac tccatctt gggtaggagc chr1:18748640-18748720 61 1.12e-05 caagagtgac tccatctt gaatacaggg chr7:22219118-22219198 23 1.12e-05 ccagagtgac tccatctt gaataggggc chr7:143067422-143067502 59 1.12e-05 ccagagcaac tccatctt gaataggagc chr17:42022606-42022686 44 1.12e-05 ccacagcgac tccatctt gaacaagggc chr1:223079691-223079771 45 1.12e-05 ccagagcaac tccatctt aaataggggc chr20:9006514-9006594 9 1.12e-05 taaccaac tccatctt gcttctaacc chr5:108760276-108760356 34 1.12e-05 cctaaccaac tccatctt tcttctaatc chr4:117303971-117304051 34 1.12e-05 ccagagaaac tccatctt aaatagaacc chr11:97844199-97844279 59 2.26e-05 cctgagttac tccatgtt gtttatctct chr12:70484894-70484974 37 2.26e-05 cttgagttac tccatgtt gctttgttcc chr19:52290341-52290421 58 2.26e-05 ccagagcaac tccatgtt gaatagtagc chr9:99183100-99183180 58 3.14e-05 ccagagcaac tccatttt aaaaaggagc chr1:212651649-212651729 35 3.14e-05 cacgagtgac tccatttt ggcttggtct chr1:26376524-26376604 43 3.14e-05 ctgcctcgct tccatttt ccttccctct chr21:37700044-37700124 62 3.14e-05 catgggtgac tccatttt gatttttagt chr9:99445947-99446027 32 3.14e-05 cacaagtgac tccatttt gaatttgaca chr1:55359170-55359250 28 3.14e-05 cattagtgac tccatttt gatgctgaca chr3:135232355-135232435 50 3.14e-05 cttaactgac tccatttt gcttctaatc chr14:103017349-10301742 53 3.14e-05 ccagagcaac tccatttt gaataggggc chr12:33099601-33099681 25 4.00e-05 ccagagtgac tccatatt gaataggggc chr2:178603438-178603518 26 4.00e-05 TATTCCTTCT TCCATATT CCATGGTGCT chr7:46501015-46501095 54 4.00e-05 cctgagtcac tccatatt gttttctttc chrX:1021127-1021207 31 5.44e-05 gtggccgtct gccatctt gggagTggcc chr20:10415797-10415877 34 5.44e-05 GTGTTTCGCT GCCATCTT AAATCCTGGC chr17:77007697-77007777 55 7.96e-05 ccagagcaac accatctt gaataagggc chr1:118364601-118364681 17 9.42e-05 ctgcagcaca gccatgtt tcttacaGct chr11:20000338-20000418 26 9.42e-05 ACTTATGCAG GCCATGTT GAACTGTGAA chr8:111907141-111907221 42 9.42e-05 ccaaagcaca gccatgtt ccttacaCAT chr16:49192111-49192191 24 1.20e-04 GTGTGAGCTG TCCATGGT GCTGATTAGG chr3:38847407-38847487 38 1.20e-04 GCGTGCGCTA TCCATGGT TCTGAAATAG chr4:10185209-10185289 22 1.20e-04 tgacttagca gccatttt gacttgactg chr18:34850167-34850247 42 1.20e-04 TGCTGACCTG TCCATGGT GCTGATCACG chr8:142726256-142726336 22 1.20e-04 AGGACTACTG TCCATGGT GCTGGACGGT chr8:10847816-10847896 65 1.20e-04 AAGGGAGCTG TCCATGGT CACAACCC chr1:159147235-159147315 11 1.20e-04 CTTTGAGCTC TCCATGGT GCTAGCCCCT chr4:151238168-151238248 58 1.43e-04 caaactcagc accatgtt gggtccagac chr1:46768571-46768651 45 1.66e-04 CATTTAGGTC TCCGTCTT TACTCTGTCC -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TCCATCTT MEME-2 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr17:37170448-37170528 1.1e-05 35_[+2]_37 chr2:39695294-39695374 1.1e-05 53_[+2]_19 chr9:139969527-139969607 1.1e-05 54_[+2]_18 chr1:155277120-155277200 1.1e-05 38_[+2]_34 chr8:101514071-101514151 1.1e-05 54_[+2]_18 chr9:102064168-102064248 1.1e-05 52_[+2]_20 chr7:73574356-73574436 1.1e-05 39_[+2]_33 chr6:111140839-111140919 1.1e-05 47_[+2]_25 chr7:123139780-123139860 1.1e-05 53_[+2]_19 chr19:29012976-29013056 1.1e-05 51_[+2]_21 chr1:247531168-247531248 1.1e-05 67_[+2]_5 chr2:192464328-192464408 1.1e-05 65_[+2]_7 chr6:164758825-164758905 1.1e-05 47_[+2]_25 chrX:3619598-3619678 1.1e-05 46_[+2]_26 chr8:98774821-98774901 1.1e-05 72_[+2] chr10:3933019-3933099 1.1e-05 29_[+2]_43 chr14:64830135-64830215 1.1e-05 34_[+2]_38 chr3:127451789-127451869 1.1e-05 38_[+2]_34 chr10:75939023-75939103 1.1e-05 56_[+2]_16 chr16:12704982-12705062 1.1e-05 49_[+2]_23 chr1:18748640-18748720 1.1e-05 60_[+2]_12 chr7:22219118-22219198 1.1e-05 22_[+2]_50 chr7:143067422-143067502 1.1e-05 58_[+2]_14 chr17:42022606-42022686 1.1e-05 43_[+2]_29 chr1:223079691-223079771 1.1e-05 44_[+2]_28 chr20:9006514-9006594 1.1e-05 8_[+2]_64 chr5:108760276-108760356 1.1e-05 33_[+2]_39 chr4:117303971-117304051 1.1e-05 33_[+2]_39 chr11:97844199-97844279 2.3e-05 58_[+2]_14 chr12:70484894-70484974 2.3e-05 36_[+2]_36 chr19:52290341-52290421 2.3e-05 57_[+2]_15 chr9:99183100-99183180 3.1e-05 57_[+2]_15 chr1:212651649-212651729 3.1e-05 34_[+2]_38 chr1:26376524-26376604 3.1e-05 42_[+2]_30 chr21:37700044-37700124 3.1e-05 61_[+2]_11 chr9:99445947-99446027 3.1e-05 31_[+2]_41 chr1:55359170-55359250 3.1e-05 27_[+2]_45 chr3:135232355-135232435 3.1e-05 49_[+2]_23 chr14:103017349-10301742 3.1e-05 52_[+2]_20 chr12:33099601-33099681 4e-05 24_[+2]_48 chr2:178603438-178603518 4e-05 25_[+2]_47 chr7:46501015-46501095 4e-05 53_[+2]_19 chrX:1021127-1021207 5.4e-05 30_[+2]_42 chr20:10415797-10415877 5.4e-05 33_[+2]_39 chr17:77007697-77007777 8e-05 54_[+2]_18 chr1:118364601-118364681 9.4e-05 16_[+2]_56 chr11:20000338-20000418 9.4e-05 25_[+2]_47 chr8:111907141-111907221 9.4e-05 41_[+2]_31 chr16:49192111-49192191 0.00012 23_[+2]_49 chr3:38847407-38847487 0.00012 37_[+2]_35 chr4:10185209-10185289 0.00012 21_[+2]_51 chr18:34850167-34850247 0.00012 41_[+2]_31 chr8:142726256-142726336 0.00012 21_[+2]_51 chr8:10847816-10847896 0.00012 64_[+2]_8 chr1:159147235-159147315 0.00012 10_[+2]_62 chr4:151238168-151238248 0.00014 57_[+2]_15 chr1:46768571-46768651 0.00017 44_[+2]_28 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TCCATCTT MEME-2 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF TCCATCTT width=8 seqs=57 chr17:37170448-37170528 ( 36) TCCATCTT 1 chr2:39695294-39695374 ( 54) TCCATCTT 1 chr9:139969527-139969607 ( 55) TCCATCTT 1 chr1:155277120-155277200 ( 39) TCCATCTT 1 chr8:101514071-101514151 ( 55) TCCATCTT 1 chr9:102064168-102064248 ( 53) TCCATCTT 1 chr7:73574356-73574436 ( 40) TCCATCTT 1 chr6:111140839-111140919 ( 48) TCCATCTT 1 chr7:123139780-123139860 ( 54) TCCATCTT 1 chr19:29012976-29013056 ( 52) TCCATCTT 1 chr1:247531168-247531248 ( 68) TCCATCTT 1 chr2:192464328-192464408 ( 66) TCCATCTT 1 chr6:164758825-164758905 ( 48) TCCATCTT 1 chrX:3619598-3619678 ( 47) TCCATCTT 1 chr8:98774821-98774901 ( 73) TCCATCTT 1 chr10:3933019-3933099 ( 30) TCCATCTT 1 chr14:64830135-64830215 ( 35) TCCATCTT 1 chr3:127451789-127451869 ( 39) TCCATCTT 1 chr10:75939023-75939103 ( 57) TCCATCTT 1 chr16:12704982-12705062 ( 50) TCCATCTT 1 chr1:18748640-18748720 ( 61) TCCATCTT 1 chr7:22219118-22219198 ( 23) TCCATCTT 1 chr7:143067422-143067502 ( 59) TCCATCTT 1 chr17:42022606-42022686 ( 44) TCCATCTT 1 chr1:223079691-223079771 ( 45) TCCATCTT 1 chr20:9006514-9006594 ( 9) TCCATCTT 1 chr5:108760276-108760356 ( 34) TCCATCTT 1 chr4:117303971-117304051 ( 34) TCCATCTT 1 chr11:97844199-97844279 ( 59) TCCATGTT 1 chr12:70484894-70484974 ( 37) TCCATGTT 1 chr19:52290341-52290421 ( 58) TCCATGTT 1 chr9:99183100-99183180 ( 58) TCCATTTT 1 chr1:212651649-212651729 ( 35) TCCATTTT 1 chr1:26376524-26376604 ( 43) TCCATTTT 1 chr21:37700044-37700124 ( 62) TCCATTTT 1 chr9:99445947-99446027 ( 32) TCCATTTT 1 chr1:55359170-55359250 ( 28) TCCATTTT 1 chr3:135232355-135232435 ( 50) TCCATTTT 1 chr14:103017349-10301742 ( 53) TCCATTTT 1 chr12:33099601-33099681 ( 25) TCCATATT 1 chr2:178603438-178603518 ( 26) TCCATATT 1 chr7:46501015-46501095 ( 54) TCCATATT 1 chrX:1021127-1021207 ( 31) GCCATCTT 1 chr20:10415797-10415877 ( 34) GCCATCTT 1 chr17:77007697-77007777 ( 55) ACCATCTT 1 chr1:118364601-118364681 ( 17) GCCATGTT 1 chr11:20000338-20000418 ( 26) GCCATGTT 1 chr8:111907141-111907221 ( 42) GCCATGTT 1 chr16:49192111-49192191 ( 24) TCCATGGT 1 chr3:38847407-38847487 ( 38) TCCATGGT 1 chr4:10185209-10185289 ( 22) GCCATTTT 1 chr18:34850167-34850247 ( 42) TCCATGGT 1 chr8:142726256-142726336 ( 22) TCCATGGT 1 chr8:10847816-10847896 ( 65) TCCATGGT 1 chr1:159147235-159147315 ( 11) TCCATGGT 1 chr4:151238168-151238248 ( 58) ACCATGTT 1 chr1:46768571-46768651 ( 45) TCCGTCTT 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TCCATCTT MEME-2 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 18250 bayes= 8.94323 E= 1.0e-051 -261 -1248 -143 196 -1248 183 -1248 -1248 -1248 183 -1248 -1248 220 -1248 -401 -1248 -1248 -1248 -1248 218 -202 100 -32 -49 -1248 -1248 -143 202 -1248 -1248 -1248 218 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TCCATCTT MEME-2 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 57 E= 1.0e-051 0.035088 0.000000 0.105263 0.859649 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.982456 0.000000 0.017544 0.000000 0.000000 0.000000 0.000000 1.000000 0.052632 0.561404 0.228070 0.157895 0.000000 0.000000 0.105263 0.894737 0.000000 0.000000 0.000000 1.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TCCATCTT MEME-2 regular expression -------------------------------------------------------------------------------- TCCAT[CG]TT -------------------------------------------------------------------------------- Time 8.43 secs. ******************************************************************************** ******************************************************************************** MOTIF GAACCAGA MEME-3 width = 8 sites = 27 llr = 283 E-value = 4.8e-023 ******************************************************************************** -------------------------------------------------------------------------------- Motif GAACCAGA MEME-3 Description -------------------------------------------------------------------------------- Simplified A :a9::a:a pos.-specific C :::aa:1: probability G a:1:::9: matrix T :::::::: bits 2.2 * * * 2.0 * * * 1.8 ****** * 1.6 ****** * Relative 1.3 ******** Entropy 1.1 ******** (15.1 bits) 0.9 ******** 0.7 ******** 0.4 ******** 0.2 ******** 0.0 -------- Multilevel GAACCAGA consensus sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GAACCAGA MEME-3 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr2:39695294-39695374 41 1.33e-05 agaggtgtgt gaaccaga gcaactccat chr9:139969527-139969607 42 1.33e-05 agaggtgtgt gaaccaga gcaactccat chr5:5586023-5586103 23 1.33e-05 atctttcatt gaaccaga gctactccat chr9:99183100-99183180 45 1.33e-05 agaggcctgt gaaccaga gcaactccat chr1:155277120-155277200 26 1.33e-05 agaggtgcgt gaaccaga gcaactccat chr9:102064168-102064248 40 1.33e-05 agaggcattt gaaccaga gggactccat chr12:33099601-33099681 12 1.33e-05 agagacattt gaaccaga gtgactccat chr7:123139780-123139860 41 1.33e-05 agaggcgtgt gaaccaga gcaactccat chr19:29012976-29013056 39 1.33e-05 agaggcacgt gaaccaga acaactccat chr3:101362782-101362862 66 1.33e-05 agagctgtta gaaccaga gtgactc chr2:192464328-192464408 53 1.33e-05 agaggtgttt gaaccaga gcaactccat chr6:164758825-164758905 35 1.33e-05 agaggtattt gaaccaga gcgactccat chrX:3619598-3619678 34 1.33e-05 agcggcatct gaaccaga gcaactccat chr14:64830135-64830215 22 1.33e-05 agaggcatta gaaccaga gcaactccat chr17:77007697-77007777 42 1.33e-05 agaggccttc gaaccaga gcaacaccat chr3:127451789-127451869 26 1.33e-05 agaggcgttt gaaccaga gcaactccat chr16:12704982-12705062 37 1.33e-05 agagggattt gaaccaga gcaactccat chr14:103017349-10301742 40 1.33e-05 agaggcattt gaaccaga gcaactccat chr19:52290341-52290421 45 1.33e-05 agaggcactg gaaccaga gcaactccat chr7:143067422-143067502 46 1.33e-05 agaggcaatt gaaccaga gcaactccat chr1:223079691-223079771 32 1.33e-05 agaggcgttt gaaccaga gcaactccat chr6:111140839-111140919 35 2.63e-05 tcaggcattt gaaccaca gtgactccat chr8:98774821-98774901 60 2.63e-05 agaggcgttg gaaccaca gtgactccat chr17:42022606-42022686 31 2.63e-05 agaggcgttt gaaccaca gcgactccat chr10:75939023-75939103 44 4.39e-05 agaggcattt gagccaga gcgactccat chr7:22219118-22219198 10 4.39e-05 gaggcattt gagccaga gtgactccat chr4:117303971-117304051 21 4.39e-05 agaggtgtgt gagccaga gaaactccat -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GAACCAGA MEME-3 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr2:39695294-39695374 1.3e-05 40_[+3]_32 chr9:139969527-139969607 1.3e-05 41_[+3]_31 chr5:5586023-5586103 1.3e-05 22_[+3]_50 chr9:99183100-99183180 1.3e-05 44_[+3]_28 chr1:155277120-155277200 1.3e-05 25_[+3]_47 chr9:102064168-102064248 1.3e-05 39_[+3]_33 chr12:33099601-33099681 1.3e-05 11_[+3]_61 chr7:123139780-123139860 1.3e-05 40_[+3]_32 chr19:29012976-29013056 1.3e-05 38_[+3]_34 chr3:101362782-101362862 1.3e-05 65_[+3]_7 chr2:192464328-192464408 1.3e-05 52_[+3]_20 chr6:164758825-164758905 1.3e-05 34_[+3]_38 chrX:3619598-3619678 1.3e-05 33_[+3]_39 chr14:64830135-64830215 1.3e-05 21_[+3]_51 chr17:77007697-77007777 1.3e-05 41_[+3]_31 chr3:127451789-127451869 1.3e-05 25_[+3]_47 chr16:12704982-12705062 1.3e-05 36_[+3]_36 chr14:103017349-10301742 1.3e-05 39_[+3]_33 chr19:52290341-52290421 1.3e-05 44_[+3]_28 chr7:143067422-143067502 1.3e-05 45_[+3]_27 chr1:223079691-223079771 1.3e-05 31_[+3]_41 chr6:111140839-111140919 2.6e-05 34_[+3]_38 chr8:98774821-98774901 2.6e-05 59_[+3]_13 chr17:42022606-42022686 2.6e-05 30_[+3]_42 chr10:75939023-75939103 4.4e-05 43_[+3]_29 chr7:22219118-22219198 4.4e-05 9_[+3]_63 chr4:117303971-117304051 4.4e-05 20_[+3]_52 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GAACCAGA MEME-3 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF GAACCAGA width=8 seqs=27 chr2:39695294-39695374 ( 41) GAACCAGA 1 chr9:139969527-139969607 ( 42) GAACCAGA 1 chr5:5586023-5586103 ( 23) GAACCAGA 1 chr9:99183100-99183180 ( 45) GAACCAGA 1 chr1:155277120-155277200 ( 26) GAACCAGA 1 chr9:102064168-102064248 ( 40) GAACCAGA 1 chr12:33099601-33099681 ( 12) GAACCAGA 1 chr7:123139780-123139860 ( 41) GAACCAGA 1 chr19:29012976-29013056 ( 39) GAACCAGA 1 chr3:101362782-101362862 ( 66) GAACCAGA 1 chr2:192464328-192464408 ( 53) GAACCAGA 1 chr6:164758825-164758905 ( 35) GAACCAGA 1 chrX:3619598-3619678 ( 34) GAACCAGA 1 chr14:64830135-64830215 ( 22) GAACCAGA 1 chr17:77007697-77007777 ( 42) GAACCAGA 1 chr3:127451789-127451869 ( 26) GAACCAGA 1 chr16:12704982-12705062 ( 37) GAACCAGA 1 chr14:103017349-10301742 ( 40) GAACCAGA 1 chr19:52290341-52290421 ( 45) GAACCAGA 1 chr7:143067422-143067502 ( 46) GAACCAGA 1 chr1:223079691-223079771 ( 32) GAACCAGA 1 chr6:111140839-111140919 ( 35) GAACCACA 1 chr8:98774821-98774901 ( 60) GAACCACA 1 chr17:42022606-42022686 ( 31) GAACCACA 1 chr10:75939023-75939103 ( 44) GAGCCAGA 1 chr7:22219118-22219198 ( 10) GAGCCAGA 1 chr4:117303971-117304051 ( 21) GAGCCAGA 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GAACCAGA MEME-3 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 18250 bayes= 9.9683 E= 4.8e-023 -1140 -1140 181 -1140 222 -1140 -1140 -1140 205 -1140 -135 -1140 -1140 183 -1140 -1140 -1140 183 -1140 -1140 222 -1140 -1140 -1140 -1140 -133 164 -1140 222 -1140 -1140 -1140 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GAACCAGA MEME-3 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 27 E= 4.8e-023 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.888889 0.000000 0.111111 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.111111 0.888889 0.000000 1.000000 0.000000 0.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GAACCAGA MEME-3 regular expression -------------------------------------------------------------------------------- GAACCAGA -------------------------------------------------------------------------------- Time 11.84 secs. ******************************************************************************** ******************************************************************************** MOTIF GCGCGCGC MEME-4 width = 8 sites = 59 llr = 471 E-value = 1.5e-017 ******************************************************************************** -------------------------------------------------------------------------------- Motif GCGCGCGC MEME-4 Description -------------------------------------------------------------------------------- Simplified A :2::::1: pos.-specific C :7:9:9:9 probability G a1a:a:91 matrix T :::::::: bits 2.2 2.0 1.8 * * 1.6 * **** Relative 1.3 * ***** Entropy 1.1 * ****** (11.5 bits) 0.9 ******** 0.7 ******** 0.4 ******** 0.2 ******** 0.0 -------- Multilevel GCGCGCGC consensus sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCGCGCGC MEME-4 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr1:21113825-21113905 4 4.00e-05 ccc gcgcgcgc ccccgccggc chr20:61427757-61427837 31 4.00e-05 ACCCGGCGGA GCGCGCGC CCGCCCCCGA chr17:35766964-35767044 28 4.00e-05 AAGCCCGGAG GCGCGCGC GACCGGCGGC chr17:48423470-48423550 4 4.00e-05 TGG GCGCGCGC CCCGCGTCCC chr1:169862837-169862917 1 4.00e-05 . gcgcgcgc ccgccgcctc chr22:39745869-39745949 57 4.00e-05 gccgccggcc gcgcgcgc aggggagggg chr5:176560660-176560740 16 4.00e-05 GGGAAGGGGT GCGCGCGC ACTcggggcc chr19:4400574-4400654 24 4.00e-05 cccggccccc gcgcgcgc ccccggcccc chr12:52345333-52345413 25 4.00e-05 cccTTcgggg gcgcgcgc ggcggccgcg chrX:109561377-109561457 37 4.00e-05 ctggcggggc gcgcgcgc gccgctcccg chr8:142402118-142402198 13 4.00e-05 GTGCGCGAGG GCGCGCGC GTCCCGAGCC chr7:116593803-116593883 26 4.00e-05 ccgcggccag gcgcgcgc tcggggacgc chr19:48901971-48902051 41 4.00e-05 AAGACGACTC GCGCGCGC CCGCCGTCGC chr5:88179051-88179131 46 4.00e-05 ccgcgcattc gcgcgcgc CGAGGCCGCT chr11:78128947-78129027 5 4.00e-05 CCGA GCGCGCGC AATCCGCACT chr17:40428413-40428493 25 4.00e-05 gcccgcgggg gcgcgcgc gccgcTCACG chr7:98741737-98741817 3 4.00e-05 Cc gcgcgcgc gcccgccgcc chr15:32163011-32163091 29 4.00e-05 GCGCGGACGT gcgcgcgc cgcgcctgtg chr8:74659190-74659270 46 4.00e-05 cgcccggccg gcgcgcgc gcccggcacc chr19:11071606-11071686 35 4.00e-05 gccggcgagc gcgcgcgc agcgggggcg chr17:44344246-44344326 54 4.00e-05 gcccggccgc gcgcgcgc gccgccgagg chr1:40367564-40367644 43 4.00e-05 cgcccccccc gcgcgcgc gcccTCCCTC chr8:61591213-61591293 40 4.00e-05 ctggcggcgg gcgcgcgc ggccccgcgg chr1:9884167-9884247 70 4.00e-05 CCCGCCTGGA GCGCGCGC CCG chr6:69345089-69345169 61 4.00e-05 caccccccgc gcgcgcgc ccaagggaga chr17:65989759-65989839 34 4.00e-05 gggcccgtga gcgcgcgc gtcgcggggc chr19:35759373-35759453 66 4.00e-05 cgccgccgcc gcGCGCGC GCAGCTC chr5:178977756-178977836 60 7.05e-05 CGAGCTGCGG GAGCGCGC Tgcgcgcggc chr2:181845178-181845258 38 7.05e-05 GCGCGCACGG GAGCGCGC GGGAACAGCT chr1:38230095-38230175 6 7.05e-05 ACGCG GAGCGCGC CCGGCAGACT chr4:15003888-15003968 45 7.05e-05 CCGGGAGCGC GAGCGCGC CCTCGGCTGC chr8:74659389-74659469 57 7.05e-05 ACTGCGCAAG GAGCGCGC CCGGTCCGCA chr10:105726817-10572689 14 7.05e-05 GCCCCCACgc gagcgcgc ggtgagcagg chr9:101558837-101558917 61 7.05e-05 TGTGTGCCGG GAGCGCGC CGGGGCTAGG chr9:136933194-136933274 60 1.11e-04 gaggccgcgg gcgcgcgg actacatgtc chr1:63833204-63833284 27 1.11e-04 CCCGCACCGG GCGCGCGG GTGGTGCGCG chr11:13299079-13299159 64 1.11e-04 CTGCCGAGCC GCGCGCGG ATTGGCTGG chr8:38854395-38854475 59 1.52e-04 CGTGCTCGTC GGGCGCGC GTGCTCGTCG chr1:67395844-67395924 70 1.52e-04 GGGGTGTGGT GGGCGCGC TCG chr7:150756604-150756684 66 1.52e-04 GTgcgccggg gggcgcgc acgcagg chr7:156931463-156931543 27 1.82e-04 AATGGCGGAG GCGCGCAC GTCTGCAGGG chr4:1242529-1242609 38 1.82e-04 gcggacgccg gcgcgcac gcgcactcgc chr4:1242739-1242819 11 2.44e-04 CCATCGAGAG GCGCGAGC GGCCGCGGGC chr3:38847407-38847487 28 2.44e-04 GGACGAAAGT GCGTGCGC TATCCATGGT chr11:925768-925848 49 2.44e-04 Tcgctcgcgt gcgtgcgc gtgcgtgctg chr17:77784002-77784082 40 2.44e-04 ATGGCGATGT GCGCGAGC GCCCGCCGAG chr3:50397066-50397146 61 2.75e-04 CCGTTGTGGT GAGCGCGG GGTGTGCTGG chr10:98592384-98592464 20 2.75e-04 CTCTCGGCGG GAGCGCGG GTTCctcccc chr20:62694375-62694455 72 2.75e-04 TTGTGGTCCA GAgcgcgg g chr18:74534471-74534551 20 3.14e-04 gcccgcgcgt gcgcgccc ccgccgccgc chr1:247095508-247095588 55 3.14e-04 ggccccggcg gcgcgccc cgTGCGCAGT chr1:2457658-2457738 50 3.54e-04 GTCGCCCCGA GCCCGCGC ATCAGCGACC chr18:5296364-5296444 27 3.54e-04 GTGGGCTTcc gcccgcgc ccggcgccgg chr21:46237992-46238072 53 3.85e-04 TCACGTGGCT GCGCGCGT TCACGAggcg chr18:5296152-5296232 70 4.38e-04 GCCCTGGCCT gcgcacgc gcg chr16:70473179-70473259 22 5.20e-04 ATGGAGTCCA GCGGGCGC TGGGTCGCTA chr15:75287781-75287861 72 5.20e-04 GGCAGTGGCG GCGCGGGC G chr12:2861923-2862003 53 5.61e-04 GCGTCTGCTC GGGCGCGG GGTGTGGCGC chr2:2617236-2617316 32 7.30e-04 GATGGTGCCA GGGCGCAC TAAATCCCCA -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCGCGCGC MEME-4 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr1:21113825-21113905 4e-05 3_[+4]_69 chr20:61427757-61427837 4e-05 30_[+4]_42 chr17:35766964-35767044 4e-05 27_[+4]_45 chr17:48423470-48423550 4e-05 3_[+4]_69 chr1:169862837-169862917 4e-05 [+4]_72 chr22:39745869-39745949 4e-05 56_[+4]_16 chr5:176560660-176560740 4e-05 15_[+4]_57 chr19:4400574-4400654 4e-05 23_[+4]_49 chr12:52345333-52345413 4e-05 24_[+4]_48 chrX:109561377-109561457 4e-05 36_[+4]_36 chr8:142402118-142402198 4e-05 12_[+4]_60 chr7:116593803-116593883 4e-05 25_[+4]_47 chr19:48901971-48902051 4e-05 40_[+4]_32 chr5:88179051-88179131 4e-05 45_[+4]_27 chr11:78128947-78129027 4e-05 4_[+4]_68 chr17:40428413-40428493 4e-05 24_[+4]_48 chr7:98741737-98741817 4e-05 2_[+4]_70 chr15:32163011-32163091 4e-05 28_[+4]_44 chr8:74659190-74659270 4e-05 45_[+4]_27 chr19:11071606-11071686 4e-05 34_[+4]_38 chr17:44344246-44344326 4e-05 53_[+4]_19 chr1:40367564-40367644 4e-05 42_[+4]_30 chr8:61591213-61591293 4e-05 39_[+4]_33 chr1:9884167-9884247 4e-05 69_[+4]_3 chr6:69345089-69345169 4e-05 60_[+4]_12 chr17:65989759-65989839 4e-05 33_[+4]_39 chr19:35759373-35759453 4e-05 65_[+4]_7 chr5:178977756-178977836 7.1e-05 59_[+4]_13 chr2:181845178-181845258 7.1e-05 37_[+4]_35 chr1:38230095-38230175 7.1e-05 5_[+4]_67 chr4:15003888-15003968 7.1e-05 44_[+4]_28 chr8:74659389-74659469 7.1e-05 56_[+4]_16 chr10:105726817-10572689 7.1e-05 13_[+4]_59 chr9:101558837-101558917 7.1e-05 60_[+4]_12 chr9:136933194-136933274 0.00011 59_[+4]_13 chr1:63833204-63833284 0.00011 26_[+4]_46 chr11:13299079-13299159 0.00011 63_[+4]_9 chr8:38854395-38854475 0.00015 58_[+4]_14 chr1:67395844-67395924 0.00015 69_[+4]_3 chr7:150756604-150756684 0.00015 65_[+4]_7 chr7:156931463-156931543 0.00018 26_[+4]_46 chr4:1242529-1242609 0.00018 37_[+4]_35 chr4:1242739-1242819 0.00024 10_[+4]_62 chr3:38847407-38847487 0.00024 27_[+4]_45 chr11:925768-925848 0.00024 48_[+4]_24 chr17:77784002-77784082 0.00024 39_[+4]_33 chr3:50397066-50397146 0.00027 60_[+4]_12 chr10:98592384-98592464 0.00027 19_[+4]_53 chr20:62694375-62694455 0.00027 71_[+4]_1 chr18:74534471-74534551 0.00031 19_[+4]_53 chr1:247095508-247095588 0.00031 54_[+4]_18 chr1:2457658-2457738 0.00035 49_[+4]_23 chr18:5296364-5296444 0.00035 26_[+4]_46 chr21:46237992-46238072 0.00039 52_[+4]_20 chr18:5296152-5296232 0.00044 69_[+4]_3 chr16:70473179-70473259 0.00052 21_[+4]_51 chr15:75287781-75287861 0.00052 71_[+4]_1 chr12:2861923-2862003 0.00056 52_[+4]_20 chr2:2617236-2617316 0.00073 31_[+4]_41 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCGCGCGC MEME-4 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF GCGCGCGC width=8 seqs=59 chr1:21113825-21113905 ( 4) GCGCGCGC 1 chr20:61427757-61427837 ( 31) GCGCGCGC 1 chr17:35766964-35767044 ( 28) GCGCGCGC 1 chr17:48423470-48423550 ( 4) GCGCGCGC 1 chr1:169862837-169862917 ( 1) GCGCGCGC 1 chr22:39745869-39745949 ( 57) GCGCGCGC 1 chr5:176560660-176560740 ( 16) GCGCGCGC 1 chr19:4400574-4400654 ( 24) GCGCGCGC 1 chr12:52345333-52345413 ( 25) GCGCGCGC 1 chrX:109561377-109561457 ( 37) GCGCGCGC 1 chr8:142402118-142402198 ( 13) GCGCGCGC 1 chr7:116593803-116593883 ( 26) GCGCGCGC 1 chr19:48901971-48902051 ( 41) GCGCGCGC 1 chr5:88179051-88179131 ( 46) GCGCGCGC 1 chr11:78128947-78129027 ( 5) GCGCGCGC 1 chr17:40428413-40428493 ( 25) GCGCGCGC 1 chr7:98741737-98741817 ( 3) GCGCGCGC 1 chr15:32163011-32163091 ( 29) GCGCGCGC 1 chr8:74659190-74659270 ( 46) GCGCGCGC 1 chr19:11071606-11071686 ( 35) GCGCGCGC 1 chr17:44344246-44344326 ( 54) GCGCGCGC 1 chr1:40367564-40367644 ( 43) GCGCGCGC 1 chr8:61591213-61591293 ( 40) GCGCGCGC 1 chr1:9884167-9884247 ( 70) GCGCGCGC 1 chr6:69345089-69345169 ( 61) GCGCGCGC 1 chr17:65989759-65989839 ( 34) GCGCGCGC 1 chr19:35759373-35759453 ( 66) GCGCGCGC 1 chr5:178977756-178977836 ( 60) GAGCGCGC 1 chr2:181845178-181845258 ( 38) GAGCGCGC 1 chr1:38230095-38230175 ( 6) GAGCGCGC 1 chr4:15003888-15003968 ( 45) GAGCGCGC 1 chr8:74659389-74659469 ( 57) GAGCGCGC 1 chr10:105726817-10572689 ( 14) GAGCGCGC 1 chr9:101558837-101558917 ( 61) GAGCGCGC 1 chr9:136933194-136933274 ( 60) GCGCGCGG 1 chr1:63833204-63833284 ( 27) GCGCGCGG 1 chr11:13299079-13299159 ( 64) GCGCGCGG 1 chr8:38854395-38854475 ( 59) GGGCGCGC 1 chr1:67395844-67395924 ( 70) GGGCGCGC 1 chr7:150756604-150756684 ( 66) GGGCGCGC 1 chr7:156931463-156931543 ( 27) GCGCGCAC 1 chr4:1242529-1242609 ( 38) GCGCGCAC 1 chr4:1242739-1242819 ( 11) GCGCGAGC 1 chr3:38847407-38847487 ( 28) GCGTGCGC 1 chr11:925768-925848 ( 49) GCGTGCGC 1 chr17:77784002-77784082 ( 40) GCGCGAGC 1 chr3:50397066-50397146 ( 61) GAGCGCGG 1 chr10:98592384-98592464 ( 20) GAGCGCGG 1 chr20:62694375-62694455 ( 72) GAGCGCGG 1 chr18:74534471-74534551 ( 20) GCGCGCCC 1 chr1:247095508-247095588 ( 55) GCGCGCCC 1 chr1:2457658-2457738 ( 50) GCCCGCGC 1 chr18:5296364-5296444 ( 27) GCCCGCGC 1 chr21:46237992-46238072 ( 53) GCGCGCGT 1 chr18:5296152-5296232 ( 70) GCGCACGC 1 chr16:70473179-70473259 ( 22) GCGGGCGC 1 chr15:75287781-75287861 ( 72) GCGCGGGC 1 chr12:2861923-2862003 ( 53) GGGCGCGG 1 chr2:2617236-2617316 ( 32) GGGCGCAC 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCGCGCGC MEME-4 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 18250 bayes= 8.17334 E= 1.5e-017 -1253 -1253 181 -1253 -34 141 -175 -1253 -1253 -305 176 -1253 -1253 176 -406 -270 -366 -1253 179 -1253 -266 176 -406 -1253 -207 -305 169 -1253 -1253 162 -126 -370 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCGCGCGC MEME-4 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 59 E= 1.5e-017 0.000000 0.000000 1.000000 0.000000 0.169492 0.745763 0.084746 0.000000 0.000000 0.033898 0.966102 0.000000 0.000000 0.949153 0.016949 0.033898 0.016949 0.000000 0.983051 0.000000 0.033898 0.949153 0.016949 0.000000 0.050847 0.033898 0.915254 0.000000 0.000000 0.864407 0.118644 0.016949 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCGCGCGC MEME-4 regular expression -------------------------------------------------------------------------------- GCGCGCGC -------------------------------------------------------------------------------- Time 15.34 secs. ******************************************************************************** ******************************************************************************** MOTIF CTCTGGTT MEME-5 width = 8 sites = 41 llr = 361 E-value = 8.8e-017 ******************************************************************************** -------------------------------------------------------------------------------- Motif CTCTGGTT MEME-5 Description -------------------------------------------------------------------------------- Simplified A :::::::: pos.-specific C 8:a:::1: probability G ::::89:: matrix T 2a:a219a bits 2.2 * 2.0 * 1.8 *** * 1.6 *** ** Relative 1.3 *** *** Entropy 1.1 **** *** (12.7 bits) 0.9 ******** 0.7 ******** 0.4 ******** 0.2 ******** 0.0 -------- Multilevel CTCTGGTT consensus sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CTCTGGTT MEME-5 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr18:43742167-43742247 12 1.51e-05 gatggagtcg ctctggtt caaacacctc chr14:31711921-31712001 6 1.51e-05 agttg ctctggtt cacaggcctc chr3:99495979-99496059 48 1.51e-05 gatggagttg ctctggtt tgaatgcctt chr12:131355911-13135599 65 1.51e-05 GTGCATCCCT CTCTGGTT CCTCGCTC chr4:185261031-185261111 41 1.51e-05 gatggagtca ctctggtt ccaatgcctc chr21:47939273-47939353 37 1.51e-05 gatggagttg ctctggtt taaacgcctc chr6:158176274-158176354 46 1.51e-05 gatggagttg ctctggtt cgcatgcctc chr16:10419939-10420019 7 1.51e-05 gagttg ctctggtt caagtgcctc chr12:131847317-13184739 20 1.51e-05 gatggagtca ctctggtt caaacgtctc chr16:1344225-1344305 33 1.51e-05 gatggagttg ctctggtt cacacgcctc chr14:103000336-10300041 22 1.51e-05 gatggagttg ctctggtt cacacaactc chr17:46903269-46903349 48 1.51e-05 gatggagtca ctctggtt caaacacctc chr17:40687501-40687581 20 1.51e-05 gatggagtcg ctctggtt ggaaacttct chr15:68193157-68193237 53 1.51e-05 gatggagttg ctctggtt ccagtgcttc chr17:47154389-47154469 40 1.51e-05 gatggagtcg ctctggtt caaacaactc chr3:44482956-44483036 42 1.51e-05 gatggagtca ctctggtt caaacgcctc chr20:46768463-46768543 30 1.51e-05 gatggagttg ctctggtt caagtgcctc chr20:39577456-39577536 44 1.51e-05 gatggagttg ctctggtt caaatgcctc chr6:24756954-24757034 70 1.51e-05 gatggagttg ctctggtt caa chr3:43728829-43728909 6 2.70e-05 TCTCA TTCTGGTT TGTAAGTGCT chr12:116994337-11699441 26 3.87e-05 gatggagttg ctcttgtt cacaagtctc chr10:30714401-30714481 40 3.87e-05 gatggagtcg ctcttgtt caaaagcttc chr15:68316158-68316238 61 3.87e-05 tgctagattt ctcttgtt ttcataatct chr15:45876393-45876473 47 6.96e-05 gatggagttg ctctggct caaatgcctc chr1:10754789-10754869 35 6.96e-05 TTCCCCAAAC CTCTGGCT CCGGGAGGAG chr1:223920424-223920504 9 9.02e-05 tggagttg ctctagtt cacacgcctc chr8:94886428-94886508 26 9.02e-05 gatggagtca ctctagtt cagatgcctc chr1:159147235-159147315 49 9.02e-05 CTCCAGGCTT TTCTTGTT GCTCTCCATG chr16:49192111-49192191 68 9.95e-05 CTGTCCAGGG TTCTGTTT AGAAG chr13:109335302-10933538 69 9.95e-05 tgtttcctct ttctgttt ctca chr1:20078999-20079079 37 9.95e-05 CACCACCACC TTCTGTTT TTAAATCACT chr3:31514553-31514633 68 1.09e-04 tccattaaac ctcttttt cttcg chr8:98775021-98775101 70 1.47e-04 caaaagtgac ctctggtc gtc chr18:5296364-5296444 8 1.47e-04 CCTCCCG CCCTGGTT CGTGGGCTTc chr8:10847816-10847896 44 1.47e-04 GAAAAGCCTG CTCTGGTC CCAAAGGGAG chr5:175224026-175224106 64 1.47e-04 GCACCCTCCG CCCTGGTT CCGCGCGGC chr1:179332675-179332755 47 1.58e-04 gatggagttg ctatggtt caaactcctc chr3:50397066-50397146 3 1.73e-04 GG TTCTGGCT AGAACTACAA chr14:103017349-10301742 19 1.73e-04 TGGAAGGTGA TTCTGGCt gtcagaggca chr11:70496571-70496651 73 1.88e-04 TCCAGCAATG CTCTTGCT chr1:110574383-110574463 46 2.28e-04 ACATTTGGGA TTCTTTTT CCTTCTAGAT -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CTCTGGTT MEME-5 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr18:43742167-43742247 1.5e-05 11_[+5]_61 chr14:31711921-31712001 1.5e-05 5_[+5]_67 chr3:99495979-99496059 1.5e-05 47_[+5]_25 chr12:131355911-13135599 1.5e-05 64_[+5]_8 chr4:185261031-185261111 1.5e-05 40_[+5]_32 chr21:47939273-47939353 1.5e-05 36_[+5]_36 chr6:158176274-158176354 1.5e-05 45_[+5]_27 chr16:10419939-10420019 1.5e-05 6_[+5]_66 chr12:131847317-13184739 1.5e-05 19_[+5]_53 chr16:1344225-1344305 1.5e-05 32_[+5]_40 chr14:103000336-10300041 1.5e-05 21_[+5]_51 chr17:46903269-46903349 1.5e-05 47_[+5]_25 chr17:40687501-40687581 1.5e-05 19_[+5]_53 chr15:68193157-68193237 1.5e-05 52_[+5]_20 chr17:47154389-47154469 1.5e-05 39_[+5]_33 chr3:44482956-44483036 1.5e-05 41_[+5]_31 chr20:46768463-46768543 1.5e-05 29_[+5]_43 chr20:39577456-39577536 1.5e-05 43_[+5]_29 chr6:24756954-24757034 1.5e-05 69_[+5]_3 chr3:43728829-43728909 2.7e-05 5_[+5]_67 chr12:116994337-11699441 3.9e-05 25_[+5]_47 chr10:30714401-30714481 3.9e-05 39_[+5]_33 chr15:68316158-68316238 3.9e-05 60_[+5]_12 chr15:45876393-45876473 7e-05 46_[+5]_26 chr1:10754789-10754869 7e-05 34_[+5]_38 chr1:223920424-223920504 9e-05 8_[+5]_64 chr8:94886428-94886508 9e-05 25_[+5]_47 chr1:159147235-159147315 9e-05 48_[+5]_24 chr16:49192111-49192191 9.9e-05 67_[+5]_5 chr13:109335302-10933538 9.9e-05 68_[+5]_4 chr1:20078999-20079079 9.9e-05 36_[+5]_36 chr3:31514553-31514633 0.00011 67_[+5]_5 chr8:98775021-98775101 0.00015 69_[+5]_3 chr18:5296364-5296444 0.00015 7_[+5]_65 chr8:10847816-10847896 0.00015 43_[+5]_29 chr5:175224026-175224106 0.00015 63_[+5]_9 chr1:179332675-179332755 0.00016 46_[+5]_26 chr3:50397066-50397146 0.00017 2_[+5]_70 chr14:103017349-10301742 0.00017 18_[+5]_54 chr11:70496571-70496651 0.00019 72_[+5] chr1:110574383-110574463 0.00023 45_[+5]_27 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CTCTGGTT MEME-5 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF CTCTGGTT width=8 seqs=41 chr18:43742167-43742247 ( 12) CTCTGGTT 1 chr14:31711921-31712001 ( 6) CTCTGGTT 1 chr3:99495979-99496059 ( 48) CTCTGGTT 1 chr12:131355911-13135599 ( 65) CTCTGGTT 1 chr4:185261031-185261111 ( 41) CTCTGGTT 1 chr21:47939273-47939353 ( 37) CTCTGGTT 1 chr6:158176274-158176354 ( 46) CTCTGGTT 1 chr16:10419939-10420019 ( 7) CTCTGGTT 1 chr12:131847317-13184739 ( 20) CTCTGGTT 1 chr16:1344225-1344305 ( 33) CTCTGGTT 1 chr14:103000336-10300041 ( 22) CTCTGGTT 1 chr17:46903269-46903349 ( 48) CTCTGGTT 1 chr17:40687501-40687581 ( 20) CTCTGGTT 1 chr15:68193157-68193237 ( 53) CTCTGGTT 1 chr17:47154389-47154469 ( 40) CTCTGGTT 1 chr3:44482956-44483036 ( 42) CTCTGGTT 1 chr20:46768463-46768543 ( 30) CTCTGGTT 1 chr20:39577456-39577536 ( 44) CTCTGGTT 1 chr6:24756954-24757034 ( 70) CTCTGGTT 1 chr3:43728829-43728909 ( 6) TTCTGGTT 1 chr12:116994337-11699441 ( 26) CTCTTGTT 1 chr10:30714401-30714481 ( 40) CTCTTGTT 1 chr15:68316158-68316238 ( 61) CTCTTGTT 1 chr15:45876393-45876473 ( 47) CTCTGGCT 1 chr1:10754789-10754869 ( 35) CTCTGGCT 1 chr1:223920424-223920504 ( 9) CTCTAGTT 1 chr8:94886428-94886508 ( 26) CTCTAGTT 1 chr1:159147235-159147315 ( 49) TTCTTGTT 1 chr16:49192111-49192191 ( 68) TTCTGTTT 1 chr13:109335302-10933538 ( 69) TTCTGTTT 1 chr1:20078999-20079079 ( 37) TTCTGTTT 1 chr3:31514553-31514633 ( 68) CTCTTTTT 1 chr8:98775021-98775101 ( 70) CTCTGGTC 1 chr18:5296364-5296444 ( 8) CCCTGGTT 1 chr8:10847816-10847896 ( 44) CTCTGGTC 1 chr5:175224026-175224106 ( 64) CCCTGGTT 1 chr1:179332675-179332755 ( 47) CTATGGTT 1 chr3:50397066-50397146 ( 3) TTCTGGCT 1 chr14:103017349-10301742 ( 19) TTCTGGCT 1 chr11:70496571-70496651 ( 73) CTCTTGCT 1 chr1:110574383-110574463 ( 46) TTCTTTTT 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CTCTGGTT MEME-5 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 18250 bayes= 9.07398 E= 8.8e-017 -1200 152 -1200 -18 -1200 -252 -1200 210 -313 180 -1200 -1200 -1200 -1200 -1200 218 -213 -1200 146 -37 -1200 -1200 163 -86 -1200 -120 -1200 199 -1200 -252 -1200 210 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CTCTGGTT MEME-5 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 41 E= 8.8e-017 0.000000 0.804878 0.000000 0.195122 0.000000 0.048780 0.000000 0.951220 0.024390 0.975610 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.048780 0.000000 0.780488 0.170732 0.000000 0.000000 0.878049 0.121951 0.000000 0.121951 0.000000 0.878049 0.000000 0.048780 0.000000 0.951220 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CTCTGGTT MEME-5 regular expression -------------------------------------------------------------------------------- CTCTGGTT -------------------------------------------------------------------------------- Time 18.72 secs. ******************************************************************************** ******************************************************************************** SUMMARY OF MOTIFS ******************************************************************************** -------------------------------------------------------------------------------- Combined block diagrams: non-overlapping sites with p-value < 0.0001 -------------------------------------------------------------------------------- SEQUENCE NAME COMBINED P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr7:46501015-46501095 3.77e-02 53_[+2(4.00e-05)]_19 chr18:5295224-5295304 9.34e-01 80 chr19:35759373-35759453 2.61e-01 65_[+4(4.00e-05)]_7 chr6:167368749-167368829 7.51e-01 80 chr17:65989759-65989839 1.74e-01 33_[+4(4.00e-05)]_39 chr9:101558837-101558917 2.71e-01 60_[+4(7.05e-05)]_12 chr6:69345089-69345169 1.80e-01 58_[+4(4.00e-05)]_14 chr1:9884167-9884247 1.96e-01 10_[+4(4.00e-05)]_17_[+4(4.00e-05)]_\ 26_[+4(4.00e-05)]_3 chr1:10754789-10754869 1.09e-01 34_[+5(6.96e-05)]_38 chr10:105726817-10572689 3.83e-01 13_[+4(7.05e-05)]_59 chr8:61591213-61591293 2.30e-01 39_[+4(4.00e-05)]_33 chr4:1242529-1242609 4.76e-01 80 chr4:117303971-117304051 6.81e-04 20_[+3(4.39e-05)]_5_[+2(1.12e-05)]_\ 39 chr1:40367564-40367644 1.63e-01 42_[+4(4.00e-05)]_30 chr5:151304251-151304331 3.41e-01 80 chr9:128845118-128845198 2.97e-01 80 chr2:72984387-72984467 4.01e-02 18_[+1(1.86e-05)]_24_[+1(6.28e-05)]_\ 22 chr1:9884374-9884454 9.50e-01 80 chr17:44344246-44344326 2.90e-01 11_[+4(4.00e-05)]_32_[+4(4.00e-05)]_\ 21 chr4:138889136-138889216 8.92e-03 37_[+1(1.06e-05)]_35 chr7:150756604-150756684 4.43e-01 80 chr6:162785697-162785777 7.00e-03 44_[+1(7.33e-05)]_28 chr5:108760276-108760356 1.39e-02 33_[+2(1.12e-05)]_39 chr19:11071606-11071686 1.51e-01 32_[+4(4.00e-05)]_40 chr8:74659190-74659270 1.43e-01 45_[+4(4.00e-05)]_27 chr1:159147235-159147315 2.96e-02 48_[+5(9.02e-05)]_24 chr10:124671558-12467163 4.24e-01 80 chr2:10091641-10091721 6.02e-01 80 chr4:55252651-55252731 2.02e-01 80 chr20:10415797-10415877 5.31e-02 33_[+2(5.44e-05)]_39 chrX:503119-503199 4.33e-01 80 chr11:13299079-13299159 4.54e-02 80 chr15:32163011-32163091 3.01e-01 28_[+4(4.00e-05)]_44 chr19:7627865-7627945 6.90e-01 80 chr7:98741737-98741817 2.14e-01 2_[+4(4.00e-05)]_70 chr20:34681056-34681136 9.08e-01 80 chr1:20078999-20079079 1.78e-02 36_[+5(9.95e-05)]_36 chr17:40428413-40428493 2.23e-01 24_[+4(4.00e-05)]_48 chr11:78128947-78129027 2.40e-01 4_[+4(4.00e-05)]_68 chr18:5296152-5296232 2.82e-01 80 chr16:71501806-71501886 9.30e-02 80 chr5:87547342-87547422 1.54e-01 80 chr11:70496571-70496651 1.73e-01 80 chr5:88179051-88179131 1.49e-01 9_[+4(4.00e-05)]_28_[+4(4.00e-05)]_\ 27 chr9:126872742-126872822 8.92e-01 80 chrX:1021127-1021207 1.84e-01 8_[+2(5.44e-05)]_14_[+2(5.44e-05)]_\ 14_[+2(7.96e-05)]_20 chr13:109335302-10933538 7.56e-04 11_[+1(1.06e-05)]_49_[+5(9.95e-05)]_\ 4 chr19:48901971-48902051 5.07e-02 40_[+4(4.00e-05)]_32 chr16:88627291-88627371 4.86e-01 80 chr2:178603438-178603518 3.65e-02 25_[+2(4.00e-05)]_47 chr8:74659389-74659469 1.91e-01 56_[+4(7.05e-05)]_16 chr15:64162916-64162996 1.18e-01 80 chr19:55195882-55195962 6.29e-02 80 chr1:35390559-35390639 9.85e-01 80 chr15:75287984-75288064 8.61e-01 80 chr5:175224026-175224106 1.03e-01 80 chr17:42022805-42022885 5.22e-02 80 chr7:116593803-116593883 1.58e-01 25_[+4(4.00e-05)]_47 chr11:221025-221105 8.53e-01 80 chr6:24756954-24757034 5.43e-04 57_[+1(1.06e-05)]_4_[+5(1.51e-05)]_\ 3 chr7:73867179-73867259 1.88e-02 40_[+1(1.06e-05)]_32 chr15:65529649-65529729 8.48e-01 80 chr1:63833204-63833284 3.44e-01 80 chr3:31514553-31514633 6.49e-02 80 chr8:142402118-142402198 1.64e-01 12_[+4(4.00e-05)]_60 chrX:109561377-109561457 4.25e-02 34_[+4(4.00e-05)]_38 chr4:15003888-15003968 1.11e-01 44_[+4(7.05e-05)]_28 chr17:77784002-77784082 3.48e-02 80 chr13:64848842-64848922 7.91e-02 18_[+1(4.88e-05)]_54 chr4:25724785-25724865 7.89e-01 80 chr12:52345333-52345413 2.57e-01 24_[+4(4.00e-05)]_48 chr7:30711611-30711691 5.33e-01 80 chr20:9006514-9006594 7.94e-03 8_[+2(1.12e-05)]_64 chr8:111907141-111907221 6.42e-02 41_[+2(9.42e-05)]_31 chr1:67395844-67395924 2.78e-01 80 chr15:101874346-10187442 9.90e-01 80 chr2:205219402-205219482 4.31e-02 11_[+1(1.06e-05)]_10_[+1(1.06e-05)]_\ 43 chr1:223079691-223079771 1.08e-04 31_[+3(1.33e-05)]_5_[+2(1.12e-05)]_\ 28 chr3:48699238-48699318 3.14e-01 80 chr17:42022606-42022686 3.44e-04 30_[+3(2.63e-05)]_5_[+2(1.12e-05)]_\ 29 chr1:234690654-234690734 2.67e-01 80 chr11:20000338-20000418 1.96e-01 25_[+2(9.42e-05)]_47 chr20:35012547-35012627 2.31e-03 72_[+1(5.68e-05)] chr2:42064262-42064342 7.75e-01 80 chr1:11610867-11610947 5.13e-01 80 chr21:46237992-46238072 6.74e-01 80 chr16:29794592-29794672 3.47e-02 17_[+1(1.86e-05)]_22_[+1(1.86e-05)]_\ 25 chr7:143067422-143067502 5.73e-04 45_[+3(1.33e-05)]_5_[+2(1.12e-05)]_\ 14 chr7:22219118-22219198 7.85e-04 9_[+3(4.39e-05)]_5_[+2(1.12e-05)]_\ 50 chr20:36255539-36255619 5.55e-01 80 chr12:6722789-6722869 9.25e-01 80 chr8:10847816-10847896 1.25e-02 80 chr19:52290341-52290421 5.10e-04 44_[+3(1.33e-05)]_5_[+2(2.26e-05)]_\ 15 chr1:38230095-38230175 8.00e-02 5_[+4(7.05e-05)]_67 chr2:2617236-2617316 2.16e-02 19_[+1(8.42e-05)]_53 chr1:18748640-18748720 1.68e-04 60_[+2(1.12e-05)]_12 chr8:142726256-142726336 4.92e-02 80 chr14:103017349-10301742 4.00e-05 39_[+3(1.33e-05)]_5_[+2(3.14e-05)]_\ 20 chr6:134612452-134612532 4.84e-02 36_[+1(1.86e-05)]_36 chr11:65626907-65626987 1.84e-01 80 chr14:36004540-36004620 9.58e-01 80 chr8:38854395-38854475 3.72e-01 80 chr12:31771224-31771304 2.56e-02 33_[+1(1.86e-05)]_39 chr3:43729870-43729950 2.72e-01 80 chr7:106437337-106437417 6.22e-03 21_[+1(1.06e-05)]_51 chr19:4400574-4400654 1.14e-01 4_[+4(4.00e-05)]_11_[+4(4.00e-05)]_\ 49 chrX:62654805-62654885 1.51e-01 13_[+1(7.33e-05)]_59 chr3:39363596-39363676 8.43e-02 16_[+1(1.06e-05)]_56 chr18:34850167-34850247 7.93e-02 80 chr16:12704982-12705062 1.46e-04 36_[+3(1.33e-05)]_5_[+2(1.12e-05)]_\ 23 chr10:75939023-75939103 1.92e-04 43_[+3(4.39e-05)]_5_[+2(1.12e-05)]_\ 16 chr11:925768-925848 9.83e-02 80 chr19:4342890-4342970 3.66e-01 80 chr9:136933194-136933274 2.22e-01 80 chr15:75287781-75287861 3.23e-01 80 chr2:189099528-189099608 3.06e-01 80 chr15:68316158-68316238 4.84e-05 34_[+1(1.06e-05)]_18_[+5(3.87e-05)]_\ 12 chr12:70484894-70484974 8.65e-02 36_[+2(2.26e-05)]_36 chr8:94886428-94886508 3.42e-03 13_[+1(1.06e-05)]_4_[+5(9.02e-05)]_\ 47 chr20:62694375-62694455 2.18e-01 80 chr20:39577456-39577536 6.10e-04 31_[+1(1.06e-05)]_4_[+5(1.51e-05)]_\ 29 chr1:179015855-179015935 6.80e-01 80 chr3:127451789-127451869 2.07e-04 25_[+3(1.33e-05)]_5_[+2(1.12e-05)]_\ 34 chr20:46768463-46768543 9.02e-04 17_[+1(1.06e-05)]_4_[+5(1.51e-05)]_\ 43 chr4:84838828-84838908 3.77e-02 57_[+1(4.05e-05)]_15 chr20:30556334-30556414 9.43e-01 80 chr1:158788540-158788620 5.69e-01 80 chr1:222135866-222135946 2.96e-02 21_[+1(2.66e-05)]_51 chr2:181845178-181845258 3.28e-01 25_[+4(7.05e-05)]_4_[+4(7.05e-05)]_\ 35 chr4:10185209-10185289 1.58e-02 80 chr17:77007697-77007777 1.94e-03 41_[+3(1.33e-05)]_5_[+2(7.96e-05)]_\ 18 chr3:135232355-135232435 6.98e-03 49_[+2(3.14e-05)]_23 chr5:176560660-176560740 2.22e-01 15_[+4(4.00e-05)]_57 chr14:64830135-64830215 3.69e-04 21_[+3(1.33e-05)]_5_[+2(1.12e-05)]_\ 38 chr10:3933019-3933099 4.98e-03 29_[+2(1.12e-05)]_43 chr22:39745869-39745949 2.18e-01 56_[+4(4.00e-05)]_16 chr11:63302431-63302511 8.68e-02 24_[+1(1.86e-05)]_48 chr3:44482956-44483036 2.22e-04 29_[+1(1.06e-05)]_4_[+5(1.51e-05)]_\ 31 chr3:38847407-38847487 2.81e-03 80 chr5:178977756-178977836 1.01e-01 59_[+4(7.05e-05)]_13 chr12:88535941-88536021 1.93e-01 80 chr10:30714401-30714481 9.73e-04 27_[+1(1.06e-05)]_4_[+5(3.87e-05)]_\ 33 chr15:45876393-45876473 2.41e-03 34_[+1(1.06e-05)]_4_[+5(6.96e-05)]_\ 26 chr8:98774821-98774901 3.71e-04 59_[+3(2.63e-05)]_5_[+2(1.12e-05)] chr1:55359170-55359250 8.50e-02 27_[+2(3.14e-05)]_45 chr9:99445947-99446027 7.16e-02 31_[+2(3.14e-05)]_41 chrX:3619598-3619678 1.17e-05 33_[+3(1.33e-05)]_5_[+2(1.12e-05)]_\ 15_[+1(6.28e-05)]_3 chr1:247095508-247095588 3.45e-01 80 chr17:47154389-47154469 5.13e-04 27_[+1(1.06e-05)]_4_[+5(1.51e-05)]_\ 33 chr1:46768571-46768651 1.01e-02 80 chr4:1242739-1242819 4.71e-01 80 chr15:68193157-68193237 1.12e-03 40_[+1(1.06e-05)]_4_[+5(1.51e-05)]_\ 20 chr3:101360785-101360865 8.96e-01 80 chr17:40687501-40687581 1.29e-03 7_[+1(1.06e-05)]_4_[+5(1.51e-05)]_\ 53 chr1:169862837-169862917 2.65e-01 [+4(4.00e-05)]_72 chr10:98592384-98592464 4.86e-01 80 chr16:49192111-49192191 2.54e-02 67_[+5(9.95e-05)]_5 chr17:46903269-46903349 4.32e-04 35_[+1(1.06e-05)]_4_[+5(1.51e-05)]_\ 25 chr1:223920424-223920504 1.24e-01 8_[+5(9.02e-05)]_64 chr1:204196625-204196705 1.22e-01 80 chr19:49148185-49148265 9.22e-01 80 chr6:164758825-164758905 5.54e-05 34_[+3(1.33e-05)]_5_[+2(1.12e-05)]_\ 25 chr14:103000336-10300041 9.68e-04 9_[+1(1.06e-05)]_4_[+5(1.51e-05)]_\ 51 chr10:26051034-26051114 2.21e-02 5_[+1(1.06e-05)]_67 chr2:192464328-192464408 3.77e-04 52_[+3(1.33e-05)]_5_[+2(1.12e-05)]_\ 7 chr17:48423470-48423550 1.04e-02 3_[+4(4.00e-05)]_17_[+1(8.42e-05)]_\ 3_[+4(7.05e-05)]_33 chrX:43187756-43187836 1.46e-01 80 chr5:176264780-176264860 7.51e-01 80 chr22:22139144-22139224 7.74e-01 80 chr21:37700044-37700124 7.01e-02 61_[+2(3.14e-05)]_11 chr3:43728829-43728909 1.42e-01 5_[+5(2.70e-05)]_67 chr14:58765071-58765151 3.80e-01 80 chr16:1344225-1344305 8.54e-04 20_[+1(1.06e-05)]_4_[+5(1.51e-05)]_\ 40 chr11:97844199-97844279 2.84e-02 58_[+2(2.26e-05)]_14 chr12:131847317-13184739 9.45e-04 7_[+1(1.06e-05)]_4_[+5(1.51e-05)]_\ 53 chr18:5296364-5296444 6.80e-03 80 chr3:39363917-39363997 3.98e-02 13_[+1(1.06e-05)]_46_[+1(8.42e-05)]_\ 5 chr18:74534471-74534551 5.92e-01 80 chr1:247531168-247531248 1.89e-04 67_[+2(1.12e-05)]_5 chr3:101362782-101362862 2.58e-02 65_[+3(1.33e-05)]_7 chr17:35766964-35767044 2.86e-01 27_[+4(4.00e-05)]_45 chr6:15905125-15905205 7.65e-01 80 chr1:26376524-26376604 8.68e-02 42_[+2(3.14e-05)]_30 chr19:29012976-29013056 2.93e-05 38_[+3(1.33e-05)]_5_[+2(1.12e-05)]_\ 21 chr1:211729793-211729873 6.86e-01 80 chr1:212651649-212651729 4.87e-02 34_[+2(3.14e-05)]_38 chr16:10419939-10420019 7.50e-02 6_[+5(1.51e-05)]_66 chr7:123139780-123139860 5.04e-04 40_[+3(1.33e-05)]_5_[+2(1.12e-05)]_\ 19 chr1:160518888-160518968 9.71e-02 80 chr6:111140839-111140919 2.73e-05 8_[+1(5.68e-05)]_18_[+3(2.63e-05)]_\ 5_[+2(1.12e-05)]_25 chr7:73574356-73574436 7.69e-03 39_[+2(1.12e-05)]_33 chr6:158176274-158176354 6.76e-04 33_[+1(1.06e-05)]_4_[+5(1.51e-05)]_\ 27 chr21:47939273-47939353 5.91e-04 24_[+1(1.06e-05)]_4_[+5(1.51e-05)]_\ 25_[+5(5.05e-05)]_3 chr1:118364601-118364681 1.79e-02 16_[+2(9.42e-05)]_56 chr12:33099601-33099681 7.04e-04 11_[+3(1.33e-05)]_5_[+2(4.00e-05)]_\ 48 chr16:70473179-70473259 1.50e-01 80 chr9:102064168-102064248 2.90e-04 39_[+3(1.33e-05)]_5_[+2(1.12e-05)]_\ 20 chr8:29952231-29952311 1.40e-02 24_[+1(1.86e-05)]_48 chr17:26335704-26335784 2.11e-01 80 chr16:87840352-87840432 2.69e-01 80 chr12:55413756-55413836 7.44e-01 80 chrX:102353542-102353622 1.58e-01 13_[+1(1.86e-05)]_59 chr4:185261031-185261111 8.08e-04 28_[+1(1.06e-05)]_4_[+5(1.51e-05)]_\ 32 chr1:2457658-2457738 2.66e-01 80 chr12:94332336-94332416 6.73e-02 7_[+3(8.16e-05)]_65 chr9:99446155-99446235 6.28e-02 51_[+1(9.25e-05)]_21 chr14:106267658-10626773 1.00e-01 3_[+1(6.28e-05)]_69 chr16:2264910-2264990 8.20e-01 80 chr8:98775021-98775101 9.41e-03 49_[+1(4.05e-05)]_23 chr1:230287913-230287993 3.08e-02 31_[+1(1.06e-05)]_41 chr3:178818601-178818681 6.61e-01 80 chr12:131355911-13135599 3.24e-03 64_[+5(1.51e-05)]_8 chr3:20365116-20365196 1.29e-01 5_[+1(7.33e-05)]_67 chr3:99495979-99496059 4.35e-04 35_[+1(1.06e-05)]_4_[+5(1.51e-05)]_\ 25 chr20:61427757-61427837 6.44e-02 30_[+4(4.00e-05)]_42 chr6:106253567-106253647 6.58e-02 80 chr8:101514071-101514151 1.61e-02 54_[+2(1.12e-05)]_18 chr5:107867647-107867727 1.22e-01 80 chr3:50397066-50397146 4.95e-03 80 chr4:56608910-56608990 5.42e-01 80 chr1:155277120-155277200 2.19e-05 25_[+3(1.33e-05)]_5_[+2(1.12e-05)]_\ 34 chr1:110574383-110574463 2.58e-01 80 chr9:99183100-99183180 2.67e-05 44_[+3(1.33e-05)]_5_[+2(3.14e-05)]_\ 15 chr14:31711921-31712001 4.90e-02 5_[+5(1.51e-05)]_67 chr3:53389138-53389218 1.13e-01 80 chr8:41676487-41676567 5.54e-02 21_[+1(4.88e-05)]_51 chr20:49955665-49955745 2.55e-02 17_[+1(1.06e-05)]_55 chr19:47354293-47354373 5.17e-01 80 chr12:2861923-2862003 1.94e-01 80 chr3:193308487-193308567 4.81e-03 20_[+1(1.06e-05)]_52 chr1:179332675-179332755 3.11e-03 34_[+1(1.06e-05)]_38 chr1:236515251-236515331 9.91e-01 80 chr5:5586023-5586103 3.85e-02 22_[+3(1.33e-05)]_50 chr1:36864303-36864383 3.67e-03 19_[+1(1.86e-05)]_53 chr15:101874675-10187475 8.40e-01 80 chr7:106408228-106408308 4.56e-02 15_[+1(1.06e-05)]_11_[+1(1.06e-05)]_\ 38 chr18:43742167-43742247 5.00e-02 11_[+5(1.51e-05)]_61 chr9:139969527-139969607 6.23e-04 41_[+3(1.33e-05)]_5_[+2(1.12e-05)]_\ 18 chr1:246274286-246274366 1.50e-01 80 chr6:43215220-43215300 5.16e-01 80 chr1:21113825-21113905 2.97e-01 3_[+4(4.00e-05)]_69 chr2:39695294-39695374 1.11e-04 40_[+3(1.33e-05)]_5_[+2(1.12e-05)]_\ 19 chr8:131044868-131044948 6.76e-03 2_[+1(1.86e-05)]_70 chr7:156931463-156931543 4.84e-01 80 chr10:30841292-30841372 3.62e-01 80 chr6:161632082-161632162 1.42e-02 11_[+1(1.06e-05)]_61 chr4:151238168-151238248 1.91e-01 80 chr12:116994337-11699441 2.92e-03 13_[+1(1.06e-05)]_4_[+5(3.87e-05)]_\ 47 chr13:27712813-27712893 1.15e-01 80 chr17:37170448-37170528 2.80e-02 35_[+2(1.12e-05)]_37 -------------------------------------------------------------------------------- ******************************************************************************** ******************************************************************************** Stopped because requested number of motifs (5) found. ******************************************************************************** CPU: c17n09.farnam.hpc.yale.internal ********************************************************************************