******************************************************************************** MEME - Motif discovery tool ******************************************************************************** MEME version 5.3.3 (Release date: Sun Feb 7 15:39:52 2021 -0800) For further information on how to interpret these results please access https://meme-suite.org/meme. To get a copy of the MEME Suite software please access https://meme-suite.org. ******************************************************************************** ******************************************************************************** REFERENCE ******************************************************************************** If you use this program in your research, please cite: Timothy L. Bailey and Charles Elkan, "Fitting a mixture model by expectation maximization to discover motifs in biopolymers", Proceedings of the Second International Conference on Intelligent Systems for Molecular Biology, pp. 28-36, AAAI Press, Menlo Park, California, 1994. ******************************************************************************** ******************************************************************************** TRAINING SET ******************************************************************************** PRIMARY SEQUENCES= ../result/final_prediction/K562/fasta/RankLinear0.6_40/ZNF592.fasta CONTROL SEQUENCES= --none-- ALPHABET= ACGT Sequence name Weight Length Sequence name Weight Length ------------- ------ ------ ------------- ------ ------ chr1:161286307-161286387 1.0000 80 chr14:102154574-10215465 1.0000 80 chr1:11941209-11941289 1.0000 80 chr20:45264272-45264352 1.0000 80 chr7:135625275-135625355 1.0000 80 chr4:4032356-4032436 1.0000 80 chr17:40469525-40469605 1.0000 80 chr1:95550092-95550172 1.0000 80 chr3:178750821-178750901 1.0000 80 chr16:21531960-21532040 1.0000 80 chr14:23194773-23194853 1.0000 80 chr6:47384590-47384670 1.0000 80 chr10:52115913-52115993 1.0000 80 chr10:52304758-52304838 1.0000 80 chr19:3613138-3613218 1.0000 80 chr17:53529928-53530008 1.0000 80 chr17:40260283-40260363 1.0000 80 chr11:71423975-71424055 1.0000 80 chr4:38319029-38319109 1.0000 80 chr11:125424118-12542419 1.0000 80 chr16:87903291-87903371 1.0000 80 chr16:29625216-29625296 1.0000 80 chr11:3530995-3531075 1.0000 80 chr8:2590231-2590311 1.0000 80 chr1:8182247-8182327 1.0000 80 chr2:183814366-183814446 1.0000 80 chr6:34688083-34688163 1.0000 80 chr10:12307545-12307625 1.0000 80 chr3:38040022-38040102 1.0000 80 chr19:35411103-35411183 1.0000 80 chr19:18429116-18429196 1.0000 80 chr7:104771943-104772023 1.0000 80 chr10:17605614-17605694 1.0000 80 chrX:49012792-49012872 1.0000 80 chr6:34458993-34459073 1.0000 80 chr17:6897609-6897689 1.0000 80 chr12:685469-685549 1.0000 80 chrX:39966753-39966833 1.0000 80 chr3:186605593-186605673 1.0000 80 chr1:1167956-1168036 1.0000 80 chr7:45031976-45032056 1.0000 80 chr10:50385590-50385670 1.0000 80 chr1:156725464-156725544 1.0000 80 chr14:102554842-10255492 1.0000 80 chr3:101350909-101350989 1.0000 80 chr2:70483177-70483257 1.0000 80 chr17:40466044-40466124 1.0000 80 chr17:62962024-62962104 1.0000 80 chr19:47848374-47848454 1.0000 80 chr5:142599392-142599472 1.0000 80 chr22:39688922-39689002 1.0000 80 chr1:179029859-179029939 1.0000 80 chr11:14664620-14664700 1.0000 80 chr11:118910739-11891081 1.0000 80 chr6:10750946-10751026 1.0000 80 chr10:49679391-49679471 1.0000 80 chr7:106750488-106750568 1.0000 80 chr4:6736249-6736329 1.0000 80 chr14:35817174-35817254 1.0000 80 chr8:145023877-145023957 1.0000 80 chr3:44509792-44509872 1.0000 80 chr10:52352879-52352959 1.0000 80 chr6:30843106-30843186 1.0000 80 chr19:38943476-38943556 1.0000 80 chr1:211396337-211396417 1.0000 80 chr6:44169709-44169789 1.0000 80 chr7:45028880-45028960 1.0000 80 chr1:249124754-249124834 1.0000 80 chr6:3055074-3055154 1.0000 80 chr1:16276345-16276425 1.0000 80 chr1:223972447-223972527 1.0000 80 chr1:2129299-2129379 1.0000 80 chr17:15430276-15430356 1.0000 80 chr1:160986620-160986700 1.0000 80 chr12:27971692-27971772 1.0000 80 chr22:29136255-29136335 1.0000 80 chr9:99994453-99994533 1.0000 80 chr3:129895913-129895993 1.0000 80 chr12:70484884-70484964 1.0000 80 chr19:12993632-12993712 1.0000 80 chr2:32817267-32817347 1.0000 80 chr17:37490262-37490342 1.0000 80 chr7:66313579-66313659 1.0000 80 chr8:59573571-59573651 1.0000 80 chr6:161632056-161632136 1.0000 80 chr6:27743095-27743175 1.0000 80 chr11:9341153-9341233 1.0000 80 chr22:22378233-22378313 1.0000 80 chr2:86117744-86117824 1.0000 80 chr6:36852553-36852633 1.0000 80 chr3:45587101-45587181 1.0000 80 chr19:56858881-56858961 1.0000 80 chr15:35286188-35286268 1.0000 80 chr4:68568105-68568185 1.0000 80 chr8:144823871-144823951 1.0000 80 chr1:39851449-39851529 1.0000 80 chr9:100812793-100812873 1.0000 80 chr21:38711102-38711182 1.0000 80 chr8:69065236-69065316 1.0000 80 chr6:30291126-30291206 1.0000 80 chr17:75084058-75084138 1.0000 80 chr6:157939920-157940000 1.0000 80 chr7:22162912-22162992 1.0000 80 chr6:37173213-37173293 1.0000 80 chr1:212376038-212376118 1.0000 80 chr5:95043436-95043516 1.0000 80 chr19:10923841-10923921 1.0000 80 chr16:11348813-11348893 1.0000 80 chr6:27028034-27028114 1.0000 80 chr1:31574161-31574241 1.0000 80 chr4:6895506-6895586 1.0000 80 chr12:107427708-10742778 1.0000 80 chr10:50433551-50433631 1.0000 80 chr7:140186649-140186729 1.0000 80 chr20:23120323-23120403 1.0000 80 chr17:17753451-17753531 1.0000 80 chr9:80507977-80508057 1.0000 80 chr15:34948382-34948462 1.0000 80 chr7:158411150-158411230 1.0000 80 chr20:49125549-49125629 1.0000 80 chr8:59585114-59585194 1.0000 80 chr9:102796306-102796386 1.0000 80 chr20:45828639-45828719 1.0000 80 chr12:132109872-13210995 1.0000 80 chr20:9006486-9006566 1.0000 80 chr11:77356109-77356189 1.0000 80 chr11:3425717-3425797 1.0000 80 chr19:50082595-50082675 1.0000 80 chr7:150708022-150708102 1.0000 80 chr4:144284007-144284087 1.0000 80 chr14:24785550-24785630 1.0000 80 chr15:89463595-89463675 1.0000 80 chr17:38264585-38264665 1.0000 80 chr8:37929491-37929571 1.0000 80 chr17:25435128-25435208 1.0000 80 chr17:35716693-35716773 1.0000 80 chr7:158798516-158798596 1.0000 80 chr1:26635097-26635177 1.0000 80 chr8:62791555-62791635 1.0000 80 chr2:10436408-10436488 1.0000 80 chr3:5124173-5124253 1.0000 80 chr10:4909353-4909433 1.0000 80 chr1:208409467-208409547 1.0000 80 chr21:44389449-44389529 1.0000 80 chr7:149261862-149261942 1.0000 80 chr7:14040923-14041003 1.0000 80 chr1:12601770-12601850 1.0000 80 chr12:107378538-10737861 1.0000 80 chrX:67682141-67682221 1.0000 80 chr19:33177926-33178006 1.0000 80 chr4:127661938-127662018 1.0000 80 chr7:2996587-2996667 1.0000 80 chr2:173418284-173418364 1.0000 80 chr11:125431981-12543206 1.0000 80 chr2:152616956-152617036 1.0000 80 chr6:37175866-37175946 1.0000 80 chr10:74076896-74076976 1.0000 80 chr19:52053055-52053135 1.0000 80 chr20:23117554-23117634 1.0000 80 chr1:166662578-166662658 1.0000 80 chr16:23874056-23874136 1.0000 80 chr3:53270217-53270297 1.0000 80 chr3:72235385-72235465 1.0000 80 chr14:35834827-35834907 1.0000 80 chr3:186728365-186728445 1.0000 80 chr3:14314358-14314438 1.0000 80 chr9:90125115-90125195 1.0000 80 chr6:158243854-158243934 1.0000 80 chr12:3793716-3793796 1.0000 80 chr12:31985814-31985894 1.0000 80 chr17:25896463-25896543 1.0000 80 chr3:128266452-128266532 1.0000 80 chr8:61968481-61968561 1.0000 80 chr6:37150832-37150912 1.0000 80 chr8:29995099-29995179 1.0000 80 chr2:87816020-87816100 1.0000 80 chr7:75473164-75473244 1.0000 80 chr11:85873453-85873533 1.0000 80 chr1:113360337-113360417 1.0000 80 chr1:100001485-100001565 1.0000 80 chr1:93250974-93251054 1.0000 80 chr1:113445009-113445089 1.0000 80 chr19:35800835-35800915 1.0000 80 chr18:33460925-33461005 1.0000 80 chr15:66125307-66125387 1.0000 80 chr8:41668878-41668958 1.0000 80 chr17:70758208-70758288 1.0000 80 chr3:45209123-45209203 1.0000 80 chr6:16044703-16044783 1.0000 80 chr17:3907964-3908044 1.0000 80 chr12:31887105-31887185 1.0000 80 chr5:148825470-148825550 1.0000 80 chr1:155277129-155277209 1.0000 80 chr6:2980145-2980225 1.0000 80 chr4:129607274-129607354 1.0000 80 chr14:70164024-70164104 1.0000 80 chr1:235029602-235029682 1.0000 80 chr1:9835302-9835382 1.0000 80 chr17:26904159-26904239 1.0000 80 chr10:49689059-49689139 1.0000 80 chr11:33963387-33963467 1.0000 80 chr7:100724909-100724989 1.0000 80 chr11:3863029-3863109 1.0000 80 chr21:44391199-44391279 1.0000 80 chr3:43814910-43814990 1.0000 80 chr5:67715664-67715744 1.0000 80 chr6:6886821-6886901 1.0000 80 chr6:24401141-24401221 1.0000 80 chr14:34513195-34513275 1.0000 80 chr13:23388691-23388771 1.0000 80 chr1:156663792-156663872 1.0000 80 chr9:101836383-101836463 1.0000 80 chr5:176544072-176544152 1.0000 80 chr7:150052910-150052990 1.0000 80 chr1:1545377-1545457 1.0000 80 chr19:41197197-41197277 1.0000 80 chr6:37396500-37396580 1.0000 80 chr1:207979346-207979426 1.0000 80 chr9:114957491-114957571 1.0000 80 chr20:49092618-49092698 1.0000 80 chr10:75939026-75939106 1.0000 80 chr7:150019265-150019345 1.0000 80 chr2:65058475-65058555 1.0000 80 chr2:26972773-26972853 1.0000 80 chrX:62654807-62654887 1.0000 80 chr2:231519541-231519621 1.0000 80 chr22:39168032-39168112 1.0000 80 chr19:49385465-49385545 1.0000 80 chr11:65243902-65243982 1.0000 80 chr2:196234088-196234168 1.0000 80 chr11:33967512-33967592 1.0000 80 chrX:48797800-48797880 1.0000 80 chr11:96063797-96063877 1.0000 80 chr17:79632863-79632943 1.0000 80 chr2:85725175-85725255 1.0000 80 chr3:69063912-69063992 1.0000 80 chr14:69283170-69283250 1.0000 80 chr5:68387018-68387098 1.0000 80 chr1:21939734-21939814 1.0000 80 chr3:44479430-44479510 1.0000 80 chr2:170574048-170574128 1.0000 80 chr12:23052182-23052262 1.0000 80 chr10:50465389-50465469 1.0000 80 chr16:4294432-4294512 1.0000 80 chr9:132913285-132913365 1.0000 80 chr6:2857951-2858031 1.0000 80 chr2:205219402-205219482 1.0000 80 chr10:49614404-49614484 1.0000 80 chr16:68118483-68118563 1.0000 80 chr10:72475710-72475790 1.0000 80 ******************************************************************************** ******************************************************************************** COMMAND LINE SUMMARY ******************************************************************************** This information can also be useful in the event you wish to report a problem with the MEME software. command: meme -oc ../result/final_prediction/K562/inference_raw/MEME/RankLinear0.6_40_ZNF592/ -dna -nmotifs 5 -w 8 -maxsize 250000 -nostatus ../result/final_prediction/K562/fasta/RankLinear0.6_40/ZNF592.fasta model: mod= zoops nmotifs= 5 evt= inf objective function: em= E-value of product of p-values starts= E-value of product of p-values strands: + width: minw= 8 maxw= 8 nsites: minsites= 2 maxsites= 250 wnsites= 0.8 theta: spmap= uni spfuzz= 0.5 em: prior= dirichlet b= 0.01 maxiter= 50 distance= 1e-05 trim: wg= 11 ws= 1 endgaps= yes data: n= 20000 N= 250 sample: seed= 0 hsfrac= 0 searchsize= 20000 norand= no csites= 1000 Letter frequencies in dataset: A 0.252 C 0.248 G 0.256 T 0.244 Background letter frequencies (from file dataset with add-one prior applied): A 0.252 C 0.248 G 0.256 T 0.244 Background model order: 0 ******************************************************************************** ******************************************************************************** MOTIF GACTCCAT MEME-1 width = 8 sites = 66 llr = 628 E-value = 1.2e-070 ******************************************************************************** -------------------------------------------------------------------------------- Motif GACTCCAT MEME-1 Description -------------------------------------------------------------------------------- Simplified A 39::::a: pos.-specific C ::a:aa:: probability G 7::::::: matrix T 1::a:::a bits 2.0 *** 1.8 ****** 1.6 ****** 1.4 ******* Relative 1.2 ******* Entropy 1.0 ******* (13.7 bits) 0.8 ******** 0.6 ******** 0.4 ******** 0.2 ******** 0.0 -------- Multilevel GACTCCAT consensus A sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GACTCCAT MEME-1 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr19:49385465-49385545 61 1.48e-05 GAACAGGGGC GACTCCAT Cttgaacagg chr2:26972773-26972853 20 1.48e-05 agacataaga gactccat tttgttctgt chr10:75939026-75939106 51 1.48e-05 gagccagagc gactccat cttgaatagg chr6:37396500-37396580 56 1.48e-05 aaacatgagt gactccat tttgattttg chr7:150052910-150052990 63 1.48e-05 tatcatgaat gactccat tttgatgtgg chr21:44391199-44391279 34 1.48e-05 gaaccaaagc gactccat cttgaatagc chr7:100724909-100724989 53 1.48e-05 tagcatgagt gactccat tttggtttgg chr1:113445009-113445089 42 1.48e-05 tagcataagt gactccat tttaatttgt chr12:31985814-31985894 33 1.48e-05 tggccagagt gactccat cttggttgtt chr3:14314358-14314438 49 1.48e-05 agacataaga gactccat tttgttctgt chr3:186728365-186728445 53 1.48e-05 gagccagaca gactccat cttggctctt chr16:23874056-23874136 33 1.48e-05 gagccagagt gactccat cttgagtaag chrX:67682141-67682221 34 1.48e-05 gaaccagagt gactccat ctttaatagg chr21:44389449-44389529 43 1.48e-05 gagccagaca gactccat tttagtttct chr15:89463595-89463675 25 1.48e-05 taacttaact gactccat cttgcttctt chr12:132109872-13210995 48 1.48e-05 gagccagaca gactccat cttggctctt chr20:45828639-45828719 46 1.48e-05 gagccagaca gactccat cttggctctt chr9:102796306-102796386 23 1.48e-05 aaaccagagt gactccat gttgcatagg chr20:49125549-49125629 56 1.48e-05 tagcatgagt gactccat tttgattttt chr9:80507977-80508057 39 1.48e-05 aaaccagagc gactccat cttgaagtca chr12:107427708-10742778 36 1.48e-05 gaaccagagt gactccat cttaaatagg chr8:69065236-69065316 39 1.48e-05 TGTCATAAAT GACTCCAT TTCAAGACAT chr9:100812793-100812873 37 1.48e-05 tagcacgagt gactccat tttggtttgg chr9:99994453-99994533 29 1.48e-05 agacataaga gactccat tttgttctgt chr1:160986620-160986700 69 1.48e-05 agacatagga gactccat tttg chr6:3055074-3055154 24 1.48e-05 agacatagga gactccat tttgtgctgt chr1:249124754-249124834 53 1.48e-05 agacatagga gactccat tttgttctgt chr14:35817174-35817254 55 1.48e-05 gagccagaca gactccat cttggctttt chr2:70483177-70483257 63 1.48e-05 tgacttgagt gactccat tttggtttag chr3:101350909-101350989 40 1.48e-05 gagccagata gactccat cttggctcct chr19:35411103-35411183 43 1.48e-05 agacataaga gactccat tttgttctgt chr11:71423975-71424055 61 1.48e-05 gagccagaca gactccat cttggctctt chr10:52115913-52115993 36 1.48e-05 agacatagga gactccat tttgttctct chr20:45264272-45264352 17 1.48e-05 gaaccagagt gactccat cttgaacagg chr3:69063912-69063992 29 2.93e-05 gaaccggagc aactccat cttaaatagg chr22:39168032-39168112 15 2.93e-05 gaaccagagc aactccat cttgaatagg chr2:231519541-231519621 60 2.93e-05 gaaccacagc aactccat cttgattagg chr1:155277129-155277209 27 2.93e-05 gaaccagagc aactccat cttgaatagg chr17:70758208-70758288 37 2.93e-05 gaacaagagc aactccat cttgaatagg chr8:29995099-29995179 64 2.93e-05 tgacctaacc aactccat cttgcttct chr19:33177926-33178006 24 2.93e-05 gaaccagagc aactccat cttgtatagg chr17:35716693-35716773 48 2.93e-05 CCCATGCTGG AACTCCAT AACCAGCCCC chr20:9006486-9006566 34 2.93e-05 tgacctaacc aactccat cttgcttcta chr15:34948382-34948462 37 2.93e-05 gaaccagagc aactccat cttgaacagg chr4:68568105-68568185 37 2.93e-05 tagcacaagc aactccat tctggtttga chr19:12993632-12993712 49 2.93e-05 tgacctaacc aactccat cttgccttta chr3:44509792-44509872 14 2.93e-05 taacttaact aactccat cttgcttcta chr4:38319029-38319109 59 2.93e-05 gaaccagagc aactccat cttgaatagg chr7:135625275-135625355 40 2.93e-05 ggacattgtt aactccat tttgtagaca chr7:150019265-150019345 60 4.34e-05 aagccagaat tactccat cttgaataag chr4:129607274-129607354 54 4.34e-05 taacttgagt tactccat attgctttgt chr6:2980145-2980225 32 4.34e-05 gaaccagacc tactccat cttgaatatg chr12:70484884-70484964 44 4.34e-05 tagcttgagt tactccat gttgctttgt chr10:50465389-50465469 35 7.24e-05 tagcatgagt gacttcat tttggtttgg chr6:16044703-16044783 29 7.24e-05 agttgctttg gcctccaT GCCATCCTCT chr12:3793716-3793796 12 7.24e-05 aataaaaaat gcctccat acattgtgta chr1:156725464-156725544 49 7.24e-05 TGACAACTGT GCCTCCAT TGCCTACTTC chr16:4294432-4294512 49 8.74e-05 tcaaaatggc ggctccat cttcccttct chr9:101836383-101836463 39 8.74e-05 tcaaaatgat ggctccat gttcccttct chr10:50385590-50385670 39 8.74e-05 GACCTCTTCA GGCTCCAT GCCTGAGCCT chr2:87816020-87816100 60 1.18e-04 tgacgtaagt gacaccat cttagaaaaa chr8:144823871-144823951 13 1.18e-04 GCCTTCGGAG GAGTCCAT GCCGCTGACT chr22:29136255-29136335 59 1.18e-04 tgtcctaaca gacaccat cttgctgtca chr9:114957491-114957571 15 1.47e-04 GAAGAGAACC AACTTCAT ACGCCATTTT chr1:26635097-26635177 61 1.47e-04 GGTGAGTAGC AACTTCAT ACTGTCACCT chr12:107378538-10737861 57 1.91e-04 gtggcactgt aagtccat taaacctctt -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GACTCCAT MEME-1 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr19:49385465-49385545 1.5e-05 60_[+1]_12 chr2:26972773-26972853 1.5e-05 19_[+1]_53 chr10:75939026-75939106 1.5e-05 50_[+1]_22 chr6:37396500-37396580 1.5e-05 55_[+1]_17 chr7:150052910-150052990 1.5e-05 62_[+1]_10 chr21:44391199-44391279 1.5e-05 33_[+1]_39 chr7:100724909-100724989 1.5e-05 52_[+1]_20 chr1:113445009-113445089 1.5e-05 41_[+1]_31 chr12:31985814-31985894 1.5e-05 32_[+1]_40 chr3:14314358-14314438 1.5e-05 48_[+1]_24 chr3:186728365-186728445 1.5e-05 52_[+1]_20 chr16:23874056-23874136 1.5e-05 32_[+1]_40 chrX:67682141-67682221 1.5e-05 33_[+1]_39 chr21:44389449-44389529 1.5e-05 42_[+1]_30 chr15:89463595-89463675 1.5e-05 24_[+1]_48 chr12:132109872-13210995 1.5e-05 47_[+1]_25 chr20:45828639-45828719 1.5e-05 45_[+1]_27 chr9:102796306-102796386 1.5e-05 22_[+1]_50 chr20:49125549-49125629 1.5e-05 55_[+1]_17 chr9:80507977-80508057 1.5e-05 38_[+1]_34 chr12:107427708-10742778 1.5e-05 35_[+1]_37 chr8:69065236-69065316 1.5e-05 38_[+1]_34 chr9:100812793-100812873 1.5e-05 36_[+1]_36 chr9:99994453-99994533 1.5e-05 28_[+1]_44 chr1:160986620-160986700 1.5e-05 68_[+1]_4 chr6:3055074-3055154 1.5e-05 23_[+1]_49 chr1:249124754-249124834 1.5e-05 52_[+1]_20 chr14:35817174-35817254 1.5e-05 54_[+1]_18 chr2:70483177-70483257 1.5e-05 62_[+1]_10 chr3:101350909-101350989 1.5e-05 39_[+1]_33 chr19:35411103-35411183 1.5e-05 42_[+1]_30 chr11:71423975-71424055 1.5e-05 60_[+1]_12 chr10:52115913-52115993 1.5e-05 35_[+1]_37 chr20:45264272-45264352 1.5e-05 16_[+1]_56 chr3:69063912-69063992 2.9e-05 28_[+1]_44 chr22:39168032-39168112 2.9e-05 14_[+1]_58 chr2:231519541-231519621 2.9e-05 59_[+1]_13 chr1:155277129-155277209 2.9e-05 26_[+1]_46 chr17:70758208-70758288 2.9e-05 36_[+1]_36 chr8:29995099-29995179 2.9e-05 63_[+1]_9 chr19:33177926-33178006 2.9e-05 23_[+1]_49 chr17:35716693-35716773 2.9e-05 47_[+1]_25 chr20:9006486-9006566 2.9e-05 33_[+1]_39 chr15:34948382-34948462 2.9e-05 36_[+1]_36 chr4:68568105-68568185 2.9e-05 36_[+1]_36 chr19:12993632-12993712 2.9e-05 48_[+1]_24 chr3:44509792-44509872 2.9e-05 13_[+1]_59 chr4:38319029-38319109 2.9e-05 58_[+1]_14 chr7:135625275-135625355 2.9e-05 39_[+1]_33 chr7:150019265-150019345 4.3e-05 59_[+1]_13 chr4:129607274-129607354 4.3e-05 53_[+1]_19 chr6:2980145-2980225 4.3e-05 31_[+1]_41 chr12:70484884-70484964 4.3e-05 43_[+1]_29 chr10:50465389-50465469 7.2e-05 34_[+1]_38 chr6:16044703-16044783 7.2e-05 28_[+1]_44 chr12:3793716-3793796 7.2e-05 11_[+1]_61 chr1:156725464-156725544 7.2e-05 48_[+1]_24 chr16:4294432-4294512 8.7e-05 48_[+1]_24 chr9:101836383-101836463 8.7e-05 38_[+1]_34 chr10:50385590-50385670 8.7e-05 38_[+1]_34 chr2:87816020-87816100 0.00012 59_[+1]_13 chr8:144823871-144823951 0.00012 12_[+1]_60 chr22:29136255-29136335 0.00012 58_[+1]_14 chr9:114957491-114957571 0.00015 14_[+1]_58 chr1:26635097-26635177 0.00015 60_[+1]_12 chr12:107378538-10737861 0.00019 56_[+1]_16 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GACTCCAT MEME-1 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF GACTCCAT width=8 seqs=66 chr19:49385465-49385545 ( 61) GACTCCAT 1 chr2:26972773-26972853 ( 20) GACTCCAT 1 chr10:75939026-75939106 ( 51) GACTCCAT 1 chr6:37396500-37396580 ( 56) GACTCCAT 1 chr7:150052910-150052990 ( 63) GACTCCAT 1 chr21:44391199-44391279 ( 34) GACTCCAT 1 chr7:100724909-100724989 ( 53) GACTCCAT 1 chr1:113445009-113445089 ( 42) GACTCCAT 1 chr12:31985814-31985894 ( 33) GACTCCAT 1 chr3:14314358-14314438 ( 49) GACTCCAT 1 chr3:186728365-186728445 ( 53) GACTCCAT 1 chr16:23874056-23874136 ( 33) GACTCCAT 1 chrX:67682141-67682221 ( 34) GACTCCAT 1 chr21:44389449-44389529 ( 43) GACTCCAT 1 chr15:89463595-89463675 ( 25) GACTCCAT 1 chr12:132109872-13210995 ( 48) GACTCCAT 1 chr20:45828639-45828719 ( 46) GACTCCAT 1 chr9:102796306-102796386 ( 23) GACTCCAT 1 chr20:49125549-49125629 ( 56) GACTCCAT 1 chr9:80507977-80508057 ( 39) GACTCCAT 1 chr12:107427708-10742778 ( 36) GACTCCAT 1 chr8:69065236-69065316 ( 39) GACTCCAT 1 chr9:100812793-100812873 ( 37) GACTCCAT 1 chr9:99994453-99994533 ( 29) GACTCCAT 1 chr1:160986620-160986700 ( 69) GACTCCAT 1 chr6:3055074-3055154 ( 24) GACTCCAT 1 chr1:249124754-249124834 ( 53) GACTCCAT 1 chr14:35817174-35817254 ( 55) GACTCCAT 1 chr2:70483177-70483257 ( 63) GACTCCAT 1 chr3:101350909-101350989 ( 40) GACTCCAT 1 chr19:35411103-35411183 ( 43) GACTCCAT 1 chr11:71423975-71424055 ( 61) GACTCCAT 1 chr10:52115913-52115993 ( 36) GACTCCAT 1 chr20:45264272-45264352 ( 17) GACTCCAT 1 chr3:69063912-69063992 ( 29) AACTCCAT 1 chr22:39168032-39168112 ( 15) AACTCCAT 1 chr2:231519541-231519621 ( 60) AACTCCAT 1 chr1:155277129-155277209 ( 27) AACTCCAT 1 chr17:70758208-70758288 ( 37) AACTCCAT 1 chr8:29995099-29995179 ( 64) AACTCCAT 1 chr19:33177926-33178006 ( 24) AACTCCAT 1 chr17:35716693-35716773 ( 48) AACTCCAT 1 chr20:9006486-9006566 ( 34) AACTCCAT 1 chr15:34948382-34948462 ( 37) AACTCCAT 1 chr4:68568105-68568185 ( 37) AACTCCAT 1 chr19:12993632-12993712 ( 49) AACTCCAT 1 chr3:44509792-44509872 ( 14) AACTCCAT 1 chr4:38319029-38319109 ( 59) AACTCCAT 1 chr7:135625275-135625355 ( 40) AACTCCAT 1 chr7:150019265-150019345 ( 60) TACTCCAT 1 chr4:129607274-129607354 ( 54) TACTCCAT 1 chr6:2980145-2980225 ( 32) TACTCCAT 1 chr12:70484884-70484964 ( 44) TACTCCAT 1 chr10:50465389-50465469 ( 35) GACTTCAT 1 chr6:16044703-16044783 ( 29) GCCTCCAT 1 chr12:3793716-3793796 ( 12) GCCTCCAT 1 chr1:156725464-156725544 ( 49) GCCTCCAT 1 chr16:4294432-4294512 ( 49) GGCTCCAT 1 chr9:101836383-101836463 ( 39) GGCTCCAT 1 chr10:50385590-50385670 ( 39) GGCTCCAT 1 chr2:87816020-87816100 ( 60) GACACCAT 1 chr8:144823871-144823951 ( 13) GAGTCCAT 1 chr22:29136255-29136335 ( 59) GACACCAT 1 chr9:114957491-114957571 ( 15) AACTTCAT 1 chr1:26635097-26635177 ( 61) AACTTCAT 1 chr12:107378538-10737861 ( 57) AAGTCCAT 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GACTCCAT MEME-1 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 18250 bayes= 8.87455 E= 1.2e-070 11 -1269 138 -201 185 -245 -249 -1269 -1269 197 -308 -1269 -306 -1269 -1269 199 -1269 194 -1269 -242 -1269 201 -1269 -1269 199 -1269 -1269 -1269 -1269 -1269 -1269 204 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GACTCCAT MEME-1 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 66 E= 1.2e-070 0.272727 0.000000 0.666667 0.060606 0.909091 0.045455 0.045455 0.000000 0.000000 0.969697 0.030303 0.000000 0.030303 0.000000 0.000000 0.969697 0.000000 0.954545 0.000000 0.045455 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GACTCCAT MEME-1 regular expression -------------------------------------------------------------------------------- [GA]ACTCCAT -------------------------------------------------------------------------------- Time 4.82 secs. ******************************************************************************** ******************************************************************************** MOTIF ATGGAGTC MEME-2 width = 8 sites = 60 llr = 588 E-value = 1.2e-067 ******************************************************************************** -------------------------------------------------------------------------------- Motif ATGGAGTC MEME-2 Description -------------------------------------------------------------------------------- Simplified A a:::a:1: pos.-specific C :::::::7 probability G ::aa:a:: matrix T :a::::93 bits 2.0 **** * 1.8 ****** 1.6 ****** 1.4 ******* Relative 1.2 ******* Entropy 1.0 ******** (14.1 bits) 0.8 ******** 0.6 ******** 0.4 ******** 0.2 ******** 0.0 -------- Multilevel ATGGAGTC consensus T sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif ATGGAGTC MEME-2 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr2:205219402-205219482 15 1.57e-05 gaaatgtaag atggagtc tttttctaag chr3:44479430-44479510 41 1.57e-05 ctcactcaaa atggagtc gctctggttc chr2:85725175-85725255 13 1.57e-05 atctaaccaa atggagtc aactcatgct chr2:196234088-196234168 52 1.57e-05 cctattcaag atggagtc actctggttc chr6:24401141-24401221 35 1.57e-05 acagaacaaa atggagtc tcttatgtct chr1:9835302-9835382 17 1.57e-05 cctattcaag atggagtc gctctggttc chr12:31887105-31887185 55 1.57e-05 tagaagcaag atggagtc ggttaagtta chr8:41668878-41668958 17 1.57e-05 tagaagcaag atggagtc agtcacgtta chr1:113360337-113360417 18 1.57e-05 ctttttcaaa atggagtc tcttatgtct chr7:75473164-75473244 17 1.57e-05 ctcactcaag atggagtc actctggttc chr7:149261862-149261942 37 1.57e-05 cagaatgaaa atggagtc acttgtgtta chr10:4909353-4909433 26 1.57e-05 tagaagcaag atggagtc agttaagtta chr3:5124173-5124253 5 1.57e-05 caaa atggagtc tcctatgtct chr2:10436408-10436488 43 1.57e-05 cctcctcaag atggagtc actctggttc chr4:144284007-144284087 35 1.57e-05 cccattcaag atggagtc actctggttc chr5:95043436-95043516 33 1.57e-05 aagagccaag atggagtc tgtctggctc chr6:30291126-30291206 31 1.57e-05 tagaagcaag atggagtc ggttacgtta chr15:35286188-35286268 41 1.57e-05 tgaaagtaag atggagtc gattaggtca chr6:36852553-36852633 8 1.57e-05 aactaaa atggagtc actcatgcta chr22:22378233-22378313 36 1.57e-05 cctattcaac atggagtc actctggttc chr11:9341153-9341233 31 1.57e-05 acagaacaaa atggagtc tcttatgtct chr6:27743095-27743175 41 1.57e-05 acagaacaaa atggagtc tcctatgtct chr6:161632056-161632136 41 1.57e-05 aaaaagcaag atggagtc agttacgtca chr3:129895913-129895993 45 1.57e-05 aagagccaag atggagtc tgtctggctc chr1:211396337-211396417 34 1.57e-05 acagaacaaa atggagtc tcttatgtct chr6:10750946-10751026 10 1.57e-05 agagccaag atggagtc tgtctggctc chr11:118910739-11891081 63 1.57e-05 acagattaaa atggagtc tcttatgtct chr19:47848374-47848454 37 1.57e-05 cctgttcaag atggagtc actctggttc chr7:45031976-45032056 53 1.57e-05 acataacaaa atggagtc tcctgtgtct chr10:17605614-17605694 41 1.57e-05 gcaaaccaga atggagtc agtcatgcta chr6:34688083-34688163 51 1.57e-05 acagaacaaa atggagtc tcctatgtct chr11:3530995-3531075 14 1.57e-05 aagagccaag atggagtc tgtctggctc chr6:47384590-47384670 62 1.57e-05 caaaagcaag atggagtc agccatgtta chr14:23194773-23194853 17 1.57e-05 acagaacaaa atggagtc tcctatgtct chr1:161286307-161286387 19 1.57e-05 acagattaaa atggagtc tcttatgtct chr5:68387018-68387098 3 3.12e-05 ag atggagtt gccccggttc chr11:33967512-33967592 68 3.12e-05 GTAATCAAAC ATGGAGTT CAACA chr6:16044703-16044783 15 3.12e-05 gaaatctaag atggagtt gctttggcct chr1:100001485-100001565 47 3.12e-05 cctattcaag atggagtt gctctagttc chr1:166662578-166662658 46 3.12e-05 cctattcaag atggagtt gctttggttc chr11:125431981-12543206 13 3.12e-05 ccaaaccaaa atggagtt actcatgcta chr2:173418284-173418364 47 3.12e-05 gagaagcaag atggagtt ggttaggtca chr7:14040923-14041003 15 3.12e-05 CAAGTTAaaa atggagtt actcatgcta chr8:37929491-37929571 32 3.12e-05 aggagccaaa atggagtt tgtctggctc chr11:77356109-77356189 62 3.12e-05 tagaggcaag atggagtt ggttaagtca chr17:75084058-75084138 24 3.12e-05 cctattcaag atggagtt gctctggttc chr7:66313579-66313659 23 3.12e-05 CATTTACACA ATGGAGTT GCTGTTTCAT chr17:15430276-15430356 42 3.12e-05 ccaaaccaaa atggagtt actcacggta chr7:45028880-45028960 31 3.12e-05 tagaagcaag atggagtt ggttcggtca chr10:12307545-12307625 16 3.12e-05 cctgtttaag atggagtt gctctggttc chr19:50082595-50082675 27 4.75e-05 ccaaaccaaa atggagac actcatgcta chr16:29625216-29625296 33 4.75e-05 CTCCTGCGCC ATGGAGAC CCCGGCCTCG chr16:87903291-87903371 25 4.75e-05 CTCCTGCGCC ATGGAGAC CCCGGCCTCG chr16:21531960-21532040 21 4.75e-05 CTCCTGCGCC ATGGAGAC CCCGGCCTCG chr18:33460925-33461005 22 6.34e-05 gataagcaac atggagta actcaggcta chr17:25435128-25435208 47 6.34e-05 taaaggcaag atggagta ggttaggtca chr2:86117744-86117824 5 7.99e-05 caaa atggaggc gctctggttt chr1:223972447-223972527 27 7.99e-05 AGAAAAAAAG ATGGAGGC ACAATGGTCT chr1:1545377-1545457 20 1.27e-04 accctgaaaa atggagcc aggaggccac chr19:56858881-56858961 13 1.27e-04 aggagccaag atggtgtc tgtctggctc -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif ATGGAGTC MEME-2 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr2:205219402-205219482 1.6e-05 14_[+2]_58 chr3:44479430-44479510 1.6e-05 40_[+2]_32 chr2:85725175-85725255 1.6e-05 12_[+2]_60 chr2:196234088-196234168 1.6e-05 51_[+2]_21 chr6:24401141-24401221 1.6e-05 34_[+2]_38 chr1:9835302-9835382 1.6e-05 16_[+2]_56 chr12:31887105-31887185 1.6e-05 54_[+2]_18 chr8:41668878-41668958 1.6e-05 16_[+2]_56 chr1:113360337-113360417 1.6e-05 17_[+2]_55 chr7:75473164-75473244 1.6e-05 16_[+2]_56 chr7:149261862-149261942 1.6e-05 36_[+2]_36 chr10:4909353-4909433 1.6e-05 25_[+2]_47 chr3:5124173-5124253 1.6e-05 4_[+2]_68 chr2:10436408-10436488 1.6e-05 42_[+2]_30 chr4:144284007-144284087 1.6e-05 34_[+2]_38 chr5:95043436-95043516 1.6e-05 32_[+2]_40 chr6:30291126-30291206 1.6e-05 30_[+2]_42 chr15:35286188-35286268 1.6e-05 40_[+2]_32 chr6:36852553-36852633 1.6e-05 7_[+2]_65 chr22:22378233-22378313 1.6e-05 35_[+2]_37 chr11:9341153-9341233 1.6e-05 30_[+2]_42 chr6:27743095-27743175 1.6e-05 40_[+2]_32 chr6:161632056-161632136 1.6e-05 40_[+2]_32 chr3:129895913-129895993 1.6e-05 44_[+2]_28 chr1:211396337-211396417 1.6e-05 33_[+2]_39 chr6:10750946-10751026 1.6e-05 9_[+2]_63 chr11:118910739-11891081 1.6e-05 62_[+2]_10 chr19:47848374-47848454 1.6e-05 36_[+2]_36 chr7:45031976-45032056 1.6e-05 52_[+2]_20 chr10:17605614-17605694 1.6e-05 40_[+2]_32 chr6:34688083-34688163 1.6e-05 50_[+2]_22 chr11:3530995-3531075 1.6e-05 13_[+2]_59 chr6:47384590-47384670 1.6e-05 61_[+2]_11 chr14:23194773-23194853 1.6e-05 16_[+2]_56 chr1:161286307-161286387 1.6e-05 18_[+2]_54 chr5:68387018-68387098 3.1e-05 2_[+2]_70 chr11:33967512-33967592 3.1e-05 67_[+2]_5 chr6:16044703-16044783 3.1e-05 14_[+2]_58 chr1:100001485-100001565 3.1e-05 46_[+2]_26 chr1:166662578-166662658 3.1e-05 45_[+2]_27 chr11:125431981-12543206 3.1e-05 12_[+2]_60 chr2:173418284-173418364 3.1e-05 46_[+2]_26 chr7:14040923-14041003 3.1e-05 14_[+2]_58 chr8:37929491-37929571 3.1e-05 31_[+2]_41 chr11:77356109-77356189 3.1e-05 61_[+2]_11 chr17:75084058-75084138 3.1e-05 23_[+2]_49 chr7:66313579-66313659 3.1e-05 22_[+2]_50 chr17:15430276-15430356 3.1e-05 41_[+2]_31 chr7:45028880-45028960 3.1e-05 30_[+2]_42 chr10:12307545-12307625 3.1e-05 15_[+2]_57 chr19:50082595-50082675 4.7e-05 26_[+2]_46 chr16:29625216-29625296 4.7e-05 32_[+2]_40 chr16:87903291-87903371 4.7e-05 24_[+2]_48 chr16:21531960-21532040 4.7e-05 20_[+2]_52 chr18:33460925-33461005 6.3e-05 21_[+2]_51 chr17:25435128-25435208 6.3e-05 46_[+2]_26 chr2:86117744-86117824 8e-05 4_[+2]_68 chr1:223972447-223972527 8e-05 26_[+2]_46 chr1:1545377-1545457 0.00013 19_[+2]_53 chr19:56858881-56858961 0.00013 12_[+2]_60 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif ATGGAGTC MEME-2 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF ATGGAGTC width=8 seqs=60 chr2:205219402-205219482 ( 15) ATGGAGTC 1 chr3:44479430-44479510 ( 41) ATGGAGTC 1 chr2:85725175-85725255 ( 13) ATGGAGTC 1 chr2:196234088-196234168 ( 52) ATGGAGTC 1 chr6:24401141-24401221 ( 35) ATGGAGTC 1 chr1:9835302-9835382 ( 17) ATGGAGTC 1 chr12:31887105-31887185 ( 55) ATGGAGTC 1 chr8:41668878-41668958 ( 17) ATGGAGTC 1 chr1:113360337-113360417 ( 18) ATGGAGTC 1 chr7:75473164-75473244 ( 17) ATGGAGTC 1 chr7:149261862-149261942 ( 37) ATGGAGTC 1 chr10:4909353-4909433 ( 26) ATGGAGTC 1 chr3:5124173-5124253 ( 5) ATGGAGTC 1 chr2:10436408-10436488 ( 43) ATGGAGTC 1 chr4:144284007-144284087 ( 35) ATGGAGTC 1 chr5:95043436-95043516 ( 33) ATGGAGTC 1 chr6:30291126-30291206 ( 31) ATGGAGTC 1 chr15:35286188-35286268 ( 41) ATGGAGTC 1 chr6:36852553-36852633 ( 8) ATGGAGTC 1 chr22:22378233-22378313 ( 36) ATGGAGTC 1 chr11:9341153-9341233 ( 31) ATGGAGTC 1 chr6:27743095-27743175 ( 41) ATGGAGTC 1 chr6:161632056-161632136 ( 41) ATGGAGTC 1 chr3:129895913-129895993 ( 45) ATGGAGTC 1 chr1:211396337-211396417 ( 34) ATGGAGTC 1 chr6:10750946-10751026 ( 10) ATGGAGTC 1 chr11:118910739-11891081 ( 63) ATGGAGTC 1 chr19:47848374-47848454 ( 37) ATGGAGTC 1 chr7:45031976-45032056 ( 53) ATGGAGTC 1 chr10:17605614-17605694 ( 41) ATGGAGTC 1 chr6:34688083-34688163 ( 51) ATGGAGTC 1 chr11:3530995-3531075 ( 14) ATGGAGTC 1 chr6:47384590-47384670 ( 62) ATGGAGTC 1 chr14:23194773-23194853 ( 17) ATGGAGTC 1 chr1:161286307-161286387 ( 19) ATGGAGTC 1 chr5:68387018-68387098 ( 3) ATGGAGTT 1 chr11:33967512-33967592 ( 68) ATGGAGTT 1 chr6:16044703-16044783 ( 15) ATGGAGTT 1 chr1:100001485-100001565 ( 47) ATGGAGTT 1 chr1:166662578-166662658 ( 46) ATGGAGTT 1 chr11:125431981-12543206 ( 13) ATGGAGTT 1 chr2:173418284-173418364 ( 47) ATGGAGTT 1 chr7:14040923-14041003 ( 15) ATGGAGTT 1 chr8:37929491-37929571 ( 32) ATGGAGTT 1 chr11:77356109-77356189 ( 62) ATGGAGTT 1 chr17:75084058-75084138 ( 24) ATGGAGTT 1 chr7:66313579-66313659 ( 23) ATGGAGTT 1 chr17:15430276-15430356 ( 42) ATGGAGTT 1 chr7:45028880-45028960 ( 31) ATGGAGTT 1 chr10:12307545-12307625 ( 16) ATGGAGTT 1 chr19:50082595-50082675 ( 27) ATGGAGAC 1 chr16:29625216-29625296 ( 33) ATGGAGAC 1 chr16:87903291-87903371 ( 25) ATGGAGAC 1 chr16:21531960-21532040 ( 21) ATGGAGAC 1 chr18:33460925-33461005 ( 22) ATGGAGTA 1 chr17:25435128-25435208 ( 47) ATGGAGTA 1 chr2:86117744-86117824 ( 5) ATGGAGGC 1 chr1:223972447-223972527 ( 27) ATGGAGGC 1 chr1:1545377-1545457 ( 20) ATGGAGCC 1 chr19:56858881-56858961 ( 13) ATGGTGTC 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif ATGGAGTC MEME-2 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 18250 bayes= 8.91997 E= 1.2e-067 199 -1255 -1255 -1255 -1255 -1255 -1255 204 -1255 -1255 197 -1255 -1255 -1255 197 -1255 196 -1255 -1255 -387 -1255 -1255 197 -1255 -192 -389 -294 186 -292 153 -1255 4 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif ATGGAGTC MEME-2 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 60 E= 1.2e-067 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.983333 0.000000 0.000000 0.016667 0.000000 0.000000 1.000000 0.000000 0.066667 0.016667 0.033333 0.883333 0.033333 0.716667 0.000000 0.250000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif ATGGAGTC MEME-2 regular expression -------------------------------------------------------------------------------- ATGGAGT[CT] -------------------------------------------------------------------------------- Time 8.42 secs. ******************************************************************************** ******************************************************************************** MOTIF GARCCARR MEME-3 width = 8 sites = 70 llr = 510 E-value = 2.1e-008 ******************************************************************************** -------------------------------------------------------------------------------- Motif GARCCARR MEME-3 Description -------------------------------------------------------------------------------- Simplified A 3a4::946 pos.-specific C :::7a:1: probability G 7:63::64 matrix T :::::1:: bits 2.0 * 1.8 * * 1.6 * ** 1.4 * ** Relative 1.2 * *** Entropy 1.0 ****** * (10.5 bits) 0.8 ****** * 0.6 ******** 0.4 ******** 0.2 ******** 0.0 -------- Multilevel GAGCCAGA consensus A AG AG sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GARCCARR MEME-3 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr10:75939026-75939106 41 1.65e-05 agaggcattt gagccaga gcgactccat chr3:186728365-186728445 43 1.65e-05 ttagctaaga gagccaga cagactccat chr16:23874056-23874136 23 1.65e-05 agaggcactt gagccaga gtgactccat chr21:44389449-44389529 33 1.65e-05 aggagagaga gagccaga cagactccat chr12:132109872-13210995 38 1.65e-05 ttggctaaga gagccaga cagactccat chr20:45828639-45828719 36 1.65e-05 ttagctaaga gagccaga cagactccat chr14:35817174-35817254 45 1.65e-05 ttagctaaga gagccaga cagactccat chr3:101350909-101350989 30 1.65e-05 ttagctgaga gagccaga tagactccat chr11:71423975-71424055 51 1.65e-05 ttagctaaga gagccaga cagactccat chr22:39168032-39168112 5 6.58e-05 ttgt gaaccaga gcaactccat chr11:33963387-33963467 7 6.58e-05 CACTGT GAGCCAGG GCACTGTGTA chr6:2980145-2980225 22 6.58e-05 agaggcattt gaaccaga cctactccat chr1:155277129-155277209 17 6.58e-05 agaggtgcgt gaaccaga gcaactccat chr17:25896463-25896543 16 6.58e-05 AAAGGAGGAG GAGCCAGG CCCAGGGCCA chr19:33177926-33178006 14 6.58e-05 tcaggcgttt gaaccaga gcaactccat chrX:67682141-67682221 24 6.58e-05 agaggcactc gaaccaga gtgactccat chr7:149261862-149261942 69 6.58e-05 ccggcaaatg gagccagg gaag chr8:37929491-37929571 24 6.58e-05 gcaagtgaag gagccaaa atggagtttg chr15:34948382-34948462 27 6.58e-05 agaggcattt gaaccaga gcaactccat chr12:107427708-10742778 26 6.58e-05 acaggcattt gaaccaga gtgactccat chr4:38319029-38319109 49 6.58e-05 agaagcgttt gaaccaga gcaactccat chr20:45264272-45264352 7 6.58e-05 gcgttt gaaccaga gtgactccat chr7:150019265-150019345 50 8.21e-05 agaggtgttt aagccaga attactccat chr21:44391199-44391279 24 1.31e-04 aggggcattt gaaccaaa gcgactccat chr5:95043436-95043516 25 1.31e-04 gccagtgaaa gagccaag atggagtctg chr19:56858881-56858961 5 1.31e-04 gaag gagccaag atggtgtctg chr3:129895913-129895993 37 1.31e-04 gccagtgaaa gagccaag atggagtctg chr6:10750946-10751026 2 1.31e-04 a gagccaag atggagtctg chr11:3530995-3531075 6 1.31e-04 tgaaa gagccaag atggagtctg chr4:4032356-4032436 41 1.31e-04 gccagtgaaa gagccaag atggaatctg chr19:50082595-50082675 60 1.97e-04 ccatgcttcc aagccaaa actaagttga chr9:102796306-102796386 13 1.97e-04 agaggcgttc aaaccaga gtgactccat chr9:80507977-80508057 29 1.97e-04 aaagggtttc aaaccaga gcgactccat chr10:17605614-17605694 33 1.97e-04 aaaccagagc aaaccaga atggagtcag chr19:18429116-18429196 48 1.97e-04 TGCCAGCAGG AAGCCAGG CCCAAGCCCA chr6:47384590-47384670 48 1.97e-04 ccagcctgtg aagccaaa agcaagatgg chr1:212376038-212376118 30 2.64e-04 GCTGGAGAGG GAAGCAGA GAGGCCCAGG chr1:207979346-207979426 42 3.12e-04 GGGGAGCCGG AAGCCAAG CCCAGATGGC chr11:125431981-12543206 5 3.12e-04 gacc aaaccaaa atggagttac chr17:15430276-15430356 34 3.12e-04 ccagtagacc aaaccaaa atggagttac chr17:62962024-62962104 38 3.12e-04 ACGCCAGGGG AAGCCAAG CGACCGACCC chr6:24401141-24401221 2 3.29e-04 c aaggcaga agaattgttc chr6:27743095-27743175 8 3.29e-04 gaatctc aaggcaga agaatttgtc chr1:211396337-211396417 1 3.29e-04 . aaggcaga agaatttctc chr7:45031976-45032056 20 3.29e-04 acagcatccc aaggcaga agaatttttc chr6:34688083-34688163 18 3.29e-04 acagaatctc aaggcaga agaatttgcc chr3:45209123-45209203 21 3.79e-04 agtcaggcag gaagcaaa tggcaacttc chr9:90125115-90125195 38 3.79e-04 TGGCCATGGA GAAGCAGG AAGTCCCTTG chr11:77356109-77356189 54 3.79e-04 cttggagtta gaggcaag atggagttgg chr7:22162912-22162992 17 3.79e-04 CATGAACCAC GAGGCAAG CCCGTGCACC chr6:36852553-36852633 40 3.95e-04 tgacataatc aaaccaag gctttaaaaa chr14:34513195-34513275 34 4.11e-04 ACAAAGTTCT GAGCCACA TCTGACAGCC chr10:72475710-72475790 5 4.61e-04 GAGG AAGGCAGG CTCAGTAACC chr8:59585114-59585194 48 4.61e-04 acagcatctc aaagcaga atttttctca chr12:31887105-31887185 47 4.78e-04 aaggaggtta gaagcaag atggagtcgg chr8:41668878-41668958 9 4.78e-04 tgagatta gaagcaag atggagtcag chr2:173418284-173418364 39 4.78e-04 ttggaagtga gaagcaag atggagttgg chr10:4909353-4909433 18 4.78e-04 ttggaggtta gaagcaag atggagtcag chr6:30291126-30291206 23 4.78e-04 ttggagctta gaagcaag atggagtcgg chr7:45028880-45028960 23 4.78e-04 ttggaagtta gaagcaag atggagttgg chr2:231519541-231519621 50 5.10e-04 aaaggcgttt gaaccaca gcaactccat chr6:158243854-158243934 27 5.10e-04 GGAAAGCGCC GAGCCACG GCGTGCGGCG chr17:25435128-25435208 39 5.60e-04 ttagaggtta aaggcaag atggagtagg chr1:93250974-93251054 10 5.92e-04 ACCGACGCG GAGCCTGA CTTTCAGGGC chr19:52053055-52053135 12 5.92e-04 cgaacctgaa aagccaca cctaggtttt chr10:50385590-50385670 51 5.92e-04 CTCCATGCCT GAGCCTGA GTCACTGGCT chr1:208409467-208409547 41 7.20e-04 GACGGGGAAG GAGCCTGG GTCTTCCTGT chr19:38943476-38943556 5 7.20e-04 CGGG AAGCCACG GGGCTCGGGG chr1:2129299-2129379 18 7.69e-04 ACTTGTCAGG AAGCCTGA CCCCCAATCC chr17:70758208-70758288 27 1.24e-03 agaggcgttg gaacaaga gcaactccat -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GARCCARR MEME-3 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr10:75939026-75939106 1.7e-05 40_[+3]_32 chr3:186728365-186728445 1.7e-05 42_[+3]_30 chr16:23874056-23874136 1.7e-05 22_[+3]_50 chr21:44389449-44389529 1.7e-05 32_[+3]_40 chr12:132109872-13210995 1.7e-05 37_[+3]_35 chr20:45828639-45828719 1.7e-05 35_[+3]_37 chr14:35817174-35817254 1.7e-05 44_[+3]_28 chr3:101350909-101350989 1.7e-05 29_[+3]_43 chr11:71423975-71424055 1.7e-05 50_[+3]_22 chr22:39168032-39168112 6.6e-05 4_[+3]_68 chr11:33963387-33963467 6.6e-05 6_[+3]_66 chr6:2980145-2980225 6.6e-05 21_[+3]_51 chr1:155277129-155277209 6.6e-05 16_[+3]_56 chr17:25896463-25896543 6.6e-05 15_[+3]_57 chr19:33177926-33178006 6.6e-05 13_[+3]_59 chrX:67682141-67682221 6.6e-05 23_[+3]_49 chr7:149261862-149261942 6.6e-05 68_[+3]_4 chr8:37929491-37929571 6.6e-05 23_[+3]_49 chr15:34948382-34948462 6.6e-05 26_[+3]_46 chr12:107427708-10742778 6.6e-05 25_[+3]_47 chr4:38319029-38319109 6.6e-05 48_[+3]_24 chr20:45264272-45264352 6.6e-05 6_[+3]_66 chr7:150019265-150019345 8.2e-05 49_[+3]_23 chr21:44391199-44391279 0.00013 23_[+3]_49 chr5:95043436-95043516 0.00013 24_[+3]_48 chr19:56858881-56858961 0.00013 4_[+3]_68 chr3:129895913-129895993 0.00013 36_[+3]_36 chr6:10750946-10751026 0.00013 1_[+3]_71 chr11:3530995-3531075 0.00013 5_[+3]_67 chr4:4032356-4032436 0.00013 40_[+3]_32 chr19:50082595-50082675 0.0002 59_[+3]_13 chr9:102796306-102796386 0.0002 12_[+3]_60 chr9:80507977-80508057 0.0002 28_[+3]_44 chr10:17605614-17605694 0.0002 32_[+3]_40 chr19:18429116-18429196 0.0002 47_[+3]_25 chr6:47384590-47384670 0.0002 47_[+3]_25 chr1:212376038-212376118 0.00026 29_[+3]_43 chr1:207979346-207979426 0.00031 41_[+3]_31 chr11:125431981-12543206 0.00031 4_[+3]_68 chr17:15430276-15430356 0.00031 33_[+3]_39 chr17:62962024-62962104 0.00031 37_[+3]_35 chr6:24401141-24401221 0.00033 1_[+3]_71 chr6:27743095-27743175 0.00033 7_[+3]_65 chr1:211396337-211396417 0.00033 [+3]_72 chr7:45031976-45032056 0.00033 19_[+3]_53 chr6:34688083-34688163 0.00033 17_[+3]_55 chr3:45209123-45209203 0.00038 20_[+3]_52 chr9:90125115-90125195 0.00038 37_[+3]_35 chr11:77356109-77356189 0.00038 53_[+3]_19 chr7:22162912-22162992 0.00038 16_[+3]_56 chr6:36852553-36852633 0.0004 39_[+3]_33 chr14:34513195-34513275 0.00041 33_[+3]_39 chr10:72475710-72475790 0.00046 4_[+3]_68 chr8:59585114-59585194 0.00046 47_[+3]_25 chr12:31887105-31887185 0.00048 46_[+3]_26 chr8:41668878-41668958 0.00048 8_[+3]_64 chr2:173418284-173418364 0.00048 38_[+3]_34 chr10:4909353-4909433 0.00048 17_[+3]_55 chr6:30291126-30291206 0.00048 22_[+3]_50 chr7:45028880-45028960 0.00048 22_[+3]_50 chr2:231519541-231519621 0.00051 49_[+3]_23 chr6:158243854-158243934 0.00051 26_[+3]_46 chr17:25435128-25435208 0.00056 38_[+3]_34 chr1:93250974-93251054 0.00059 9_[+3]_63 chr19:52053055-52053135 0.00059 11_[+3]_61 chr10:50385590-50385670 0.00059 50_[+3]_22 chr1:208409467-208409547 0.00072 40_[+3]_32 chr19:38943476-38943556 0.00072 4_[+3]_68 chr1:2129299-2129379 0.00077 17_[+3]_55 chr17:70758208-70758288 0.0012 26_[+3]_46 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GARCCARR MEME-3 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF GARCCARR width=8 seqs=70 chr10:75939026-75939106 ( 41) GAGCCAGA 1 chr3:186728365-186728445 ( 43) GAGCCAGA 1 chr16:23874056-23874136 ( 23) GAGCCAGA 1 chr21:44389449-44389529 ( 33) GAGCCAGA 1 chr12:132109872-13210995 ( 38) GAGCCAGA 1 chr20:45828639-45828719 ( 36) GAGCCAGA 1 chr14:35817174-35817254 ( 45) GAGCCAGA 1 chr3:101350909-101350989 ( 30) GAGCCAGA 1 chr11:71423975-71424055 ( 51) GAGCCAGA 1 chr22:39168032-39168112 ( 5) GAACCAGA 1 chr11:33963387-33963467 ( 7) GAGCCAGG 1 chr6:2980145-2980225 ( 22) GAACCAGA 1 chr1:155277129-155277209 ( 17) GAACCAGA 1 chr17:25896463-25896543 ( 16) GAGCCAGG 1 chr19:33177926-33178006 ( 14) GAACCAGA 1 chrX:67682141-67682221 ( 24) GAACCAGA 1 chr7:149261862-149261942 ( 69) GAGCCAGG 1 chr8:37929491-37929571 ( 24) GAGCCAAA 1 chr15:34948382-34948462 ( 27) GAACCAGA 1 chr12:107427708-10742778 ( 26) GAACCAGA 1 chr4:38319029-38319109 ( 49) GAACCAGA 1 chr20:45264272-45264352 ( 7) GAACCAGA 1 chr7:150019265-150019345 ( 50) AAGCCAGA 1 chr21:44391199-44391279 ( 24) GAACCAAA 1 chr5:95043436-95043516 ( 25) GAGCCAAG 1 chr19:56858881-56858961 ( 5) GAGCCAAG 1 chr3:129895913-129895993 ( 37) GAGCCAAG 1 chr6:10750946-10751026 ( 2) GAGCCAAG 1 chr11:3530995-3531075 ( 6) GAGCCAAG 1 chr4:4032356-4032436 ( 41) GAGCCAAG 1 chr19:50082595-50082675 ( 60) AAGCCAAA 1 chr9:102796306-102796386 ( 13) AAACCAGA 1 chr9:80507977-80508057 ( 29) AAACCAGA 1 chr10:17605614-17605694 ( 33) AAACCAGA 1 chr19:18429116-18429196 ( 48) AAGCCAGG 1 chr6:47384590-47384670 ( 48) AAGCCAAA 1 chr1:212376038-212376118 ( 30) GAAGCAGA 1 chr1:207979346-207979426 ( 42) AAGCCAAG 1 chr11:125431981-12543206 ( 5) AAACCAAA 1 chr17:15430276-15430356 ( 34) AAACCAAA 1 chr17:62962024-62962104 ( 38) AAGCCAAG 1 chr6:24401141-24401221 ( 2) AAGGCAGA 1 chr6:27743095-27743175 ( 8) AAGGCAGA 1 chr1:211396337-211396417 ( 1) AAGGCAGA 1 chr7:45031976-45032056 ( 20) AAGGCAGA 1 chr6:34688083-34688163 ( 18) AAGGCAGA 1 chr3:45209123-45209203 ( 21) GAAGCAAA 1 chr9:90125115-90125195 ( 38) GAAGCAGG 1 chr11:77356109-77356189 ( 54) GAGGCAAG 1 chr7:22162912-22162992 ( 17) GAGGCAAG 1 chr6:36852553-36852633 ( 40) AAACCAAG 1 chr14:34513195-34513275 ( 34) GAGCCACA 1 chr10:72475710-72475790 ( 5) AAGGCAGG 1 chr8:59585114-59585194 ( 48) AAAGCAGA 1 chr12:31887105-31887185 ( 47) GAAGCAAG 1 chr8:41668878-41668958 ( 9) GAAGCAAG 1 chr2:173418284-173418364 ( 39) GAAGCAAG 1 chr10:4909353-4909433 ( 18) GAAGCAAG 1 chr6:30291126-30291206 ( 23) GAAGCAAG 1 chr7:45028880-45028960 ( 23) GAAGCAAG 1 chr2:231519541-231519621 ( 50) GAACCACA 1 chr6:158243854-158243934 ( 27) GAGCCACG 1 chr17:25435128-25435208 ( 39) AAGGCAAG 1 chr1:93250974-93251054 ( 10) GAGCCTGA 1 chr19:52053055-52053135 ( 12) AAGCCACA 1 chr10:50385590-50385670 ( 51) GAGCCTGA 1 chr1:208409467-208409547 ( 41) GAGCCTGG 1 chr19:38943476-38943556 ( 5) AAGCCACG 1 chr1:2129299-2129379 ( 18) AAGCCTGA 1 chr17:70758208-70758288 ( 27) GAACAAGA 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GARCCARR MEME-3 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 18250 bayes= 8.84505 E= 2.1e-008 38 -1277 139 -1277 199 -1277 -1277 -1277 66 -1277 123 -1277 -1277 155 8 -1277 -414 199 -1277 -1277 190 -1277 -1277 -209 50 -179 116 -1277 128 -1277 59 -1277 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GARCCARR MEME-3 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 70 E= 2.1e-008 0.328571 0.000000 0.671429 0.000000 1.000000 0.000000 0.000000 0.000000 0.400000 0.000000 0.600000 0.000000 0.000000 0.728571 0.271429 0.000000 0.014286 0.985714 0.000000 0.000000 0.942857 0.000000 0.000000 0.057143 0.357143 0.071429 0.571429 0.000000 0.614286 0.000000 0.385714 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GARCCARR MEME-3 regular expression -------------------------------------------------------------------------------- [GA]A[GA][CG]CA[GA][AG] -------------------------------------------------------------------------------- Time 12.00 secs. ******************************************************************************** ******************************************************************************** MOTIF TCTGSTTC MEME-4 width = 8 sites = 44 llr = 362 E-value = 3.7e-009 ******************************************************************************** -------------------------------------------------------------------------------- Motif TCTGSTTC MEME-4 Description -------------------------------------------------------------------------------- Simplified A :::2:::: pos.-specific C :9::43:8 probability G :::76::: matrix T a1a::7a3 bits 2.0 * * 1.8 * * * 1.6 *** * 1.4 *** * Relative 1.2 *** *** Entropy 1.0 ******** (11.9 bits) 0.8 ******** 0.6 ******** 0.4 ******** 0.2 ******** 0.0 -------- Multilevel TCTGGTTC consensus ACC T sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TCTGSTTC MEME-4 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr9:132913285-132913365 34 1.43e-05 atggcgttgc tctggttc aaacaccctg chr3:44479430-44479510 51 1.43e-05 atggagtcgc tctggttc aaatacctct chr2:196234088-196234168 62 1.43e-05 atggagtcac tctggttc atttgaactc chr1:9835302-9835382 27 1.43e-05 atggagtcgc tctggttc aaatgcctct chr7:75473164-75473244 27 1.43e-05 atggagtcac tctggttc taacgcctct chr2:10436408-10436488 53 1.43e-05 atggagtcac tctggttc aaatgcctct chr4:144284007-144284087 45 1.43e-05 atggagtcac tctggttc aaatgcctct chr17:75084058-75084138 34 1.43e-05 atggagttgc tctggttc aaacgcctct chr22:22378233-22378313 46 1.43e-05 atggagtcac tctggttc taacacctct chr19:47848374-47848454 47 1.43e-05 atggagtcac tctggttc acatgcctct chr10:12307545-12307625 26 1.43e-05 atggagttgc tctggttc aaacgcctct chr7:150052910-150052990 15 2.81e-05 ttaggaacta tctgcttc cttgaagttt chr7:100724909-100724989 5 2.81e-05 tctg tctgcttc ctcaaactct chr8:37929491-37929571 42 4.26e-05 atggagtttg tctggctc tctcagctaa chr5:95043436-95043516 43 4.26e-05 atggagtctg tctggctc tcttagctaa chr19:56858881-56858961 23 4.26e-05 atggtgtctg tctggctc tctcagctaa chr3:129895913-129895993 55 4.26e-05 atggagtctg tctggctc tcttagctaa chr6:10750946-10751026 20 4.26e-05 atggagtctg tctggctc tcttagctaa chr11:3530995-3531075 24 4.26e-05 atggagtctg tctggctc tcttagctaa chr4:4032356-4032436 59 4.26e-05 atggaatctg tctggctc tcttagctaa chr1:100001485-100001565 57 7.08e-05 atggagttgc tctagttc aaatgcctct chr4:68568105-68568185 45 7.08e-05 gcaactccat tctggttt gatctgatgg chr2:86117744-86117824 15 7.08e-05 atggaggcgc tctggttt gaacacttct chr13:23388691-23388771 12 1.12e-04 gtctcttatg tctacttc tctctacata chr6:24401141-24401221 50 1.12e-04 gtctcttatg tctacttc tttctacaca chr3:5124173-5124253 20 1.12e-04 gtctcctatg tctacttc tttctacaca chr11:9341153-9341233 46 1.12e-04 gtctcttatg tctacttc tttctacgca chr6:27743095-27743175 56 1.12e-04 gtctcctatg tctacttc tttctacaca chr1:211396337-211396417 49 1.12e-04 gtctcttatg tctacttc tttctatgca chr7:45031976-45032056 68 1.12e-04 gtctcctgtg tctacttc tctcc chr6:34688083-34688163 66 1.12e-04 gtctcctatg tctacttc tttctat chr1:161286307-161286387 34 1.12e-04 gtctcttatg tctgcttt ctatacggac chr1:208409467-208409547 58 1.41e-04 GGTCTTCCTG TCTGGCTT GGGCTGGGCT chr3:72235385-72235465 20 1.54e-04 CTCTGATTCA TCTAGTTT GAGGTCTGTT chr1:166662578-166662658 56 1.69e-04 atggagttgc tttggttc acacgcctct chr2:26972773-26972853 53 1.96e-04 gaaaaattct tctgcctt gagatactgt chr9:99994453-99994533 62 1.96e-04 ggaaaattct tctgcctt gagatgctgt chr6:3055074-3055154 57 1.96e-04 gaaaaattct tctgcctt gagattctgt chr10:52115913-52115993 69 1.96e-04 gaaaaattct tctgcctt ggga chr5:67715664-67715744 41 2.23e-04 CAACTGTACT TCTTGTTC CTTTAATGCC chr10:50465389-50465469 43 3.21e-04 gtgacttcat tttggttt ggtctggtct chr2:70483177-70483257 71 3.21e-04 gtgactccat tttggttt ag chr7:150708022-150708102 37 3.62e-04 GACCCTGTGC CCTGCTTC ATCCGGGGGT chr1:156663792-156663872 21 7.90e-04 CTCTGGGCCC CCTTGTTC CAACTGTGGC -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TCTGSTTC MEME-4 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr9:132913285-132913365 1.4e-05 33_[+4]_39 chr3:44479430-44479510 1.4e-05 50_[+4]_22 chr2:196234088-196234168 1.4e-05 61_[+4]_11 chr1:9835302-9835382 1.4e-05 26_[+4]_46 chr7:75473164-75473244 1.4e-05 26_[+4]_46 chr2:10436408-10436488 1.4e-05 52_[+4]_20 chr4:144284007-144284087 1.4e-05 44_[+4]_28 chr17:75084058-75084138 1.4e-05 33_[+4]_39 chr22:22378233-22378313 1.4e-05 45_[+4]_27 chr19:47848374-47848454 1.4e-05 46_[+4]_26 chr10:12307545-12307625 1.4e-05 25_[+4]_47 chr7:150052910-150052990 2.8e-05 14_[+4]_58 chr7:100724909-100724989 2.8e-05 4_[+4]_68 chr8:37929491-37929571 4.3e-05 41_[+4]_31 chr5:95043436-95043516 4.3e-05 42_[+4]_30 chr19:56858881-56858961 4.3e-05 22_[+4]_50 chr3:129895913-129895993 4.3e-05 54_[+4]_18 chr6:10750946-10751026 4.3e-05 19_[+4]_53 chr11:3530995-3531075 4.3e-05 23_[+4]_49 chr4:4032356-4032436 4.3e-05 58_[+4]_14 chr1:100001485-100001565 7.1e-05 56_[+4]_16 chr4:68568105-68568185 7.1e-05 44_[+4]_28 chr2:86117744-86117824 7.1e-05 14_[+4]_58 chr13:23388691-23388771 0.00011 11_[+4]_61 chr6:24401141-24401221 0.00011 49_[+4]_23 chr3:5124173-5124253 0.00011 19_[+4]_53 chr11:9341153-9341233 0.00011 45_[+4]_27 chr6:27743095-27743175 0.00011 55_[+4]_17 chr1:211396337-211396417 0.00011 48_[+4]_24 chr7:45031976-45032056 0.00011 67_[+4]_5 chr6:34688083-34688163 0.00011 65_[+4]_7 chr1:161286307-161286387 0.00011 33_[+4]_39 chr1:208409467-208409547 0.00014 57_[+4]_15 chr3:72235385-72235465 0.00015 19_[+4]_53 chr1:166662578-166662658 0.00017 55_[+4]_17 chr2:26972773-26972853 0.0002 52_[+4]_20 chr9:99994453-99994533 0.0002 61_[+4]_11 chr6:3055074-3055154 0.0002 56_[+4]_16 chr10:52115913-52115993 0.0002 68_[+4]_4 chr5:67715664-67715744 0.00022 40_[+4]_32 chr10:50465389-50465469 0.00032 42_[+4]_30 chr2:70483177-70483257 0.00032 70_[+4]_2 chr7:150708022-150708102 0.00036 36_[+4]_36 chr1:156663792-156663872 0.00079 20_[+4]_52 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TCTGSTTC MEME-4 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF TCTGSTTC width=8 seqs=44 chr9:132913285-132913365 ( 34) TCTGGTTC 1 chr3:44479430-44479510 ( 51) TCTGGTTC 1 chr2:196234088-196234168 ( 62) TCTGGTTC 1 chr1:9835302-9835382 ( 27) TCTGGTTC 1 chr7:75473164-75473244 ( 27) TCTGGTTC 1 chr2:10436408-10436488 ( 53) TCTGGTTC 1 chr4:144284007-144284087 ( 45) TCTGGTTC 1 chr17:75084058-75084138 ( 34) TCTGGTTC 1 chr22:22378233-22378313 ( 46) TCTGGTTC 1 chr19:47848374-47848454 ( 47) TCTGGTTC 1 chr10:12307545-12307625 ( 26) TCTGGTTC 1 chr7:150052910-150052990 ( 15) TCTGCTTC 1 chr7:100724909-100724989 ( 5) TCTGCTTC 1 chr8:37929491-37929571 ( 42) TCTGGCTC 1 chr5:95043436-95043516 ( 43) TCTGGCTC 1 chr19:56858881-56858961 ( 23) TCTGGCTC 1 chr3:129895913-129895993 ( 55) TCTGGCTC 1 chr6:10750946-10751026 ( 20) TCTGGCTC 1 chr11:3530995-3531075 ( 24) TCTGGCTC 1 chr4:4032356-4032436 ( 59) TCTGGCTC 1 chr1:100001485-100001565 ( 57) TCTAGTTC 1 chr4:68568105-68568185 ( 45) TCTGGTTT 1 chr2:86117744-86117824 ( 15) TCTGGTTT 1 chr13:23388691-23388771 ( 12) TCTACTTC 1 chr6:24401141-24401221 ( 50) TCTACTTC 1 chr3:5124173-5124253 ( 20) TCTACTTC 1 chr11:9341153-9341233 ( 46) TCTACTTC 1 chr6:27743095-27743175 ( 56) TCTACTTC 1 chr1:211396337-211396417 ( 49) TCTACTTC 1 chr7:45031976-45032056 ( 68) TCTACTTC 1 chr6:34688083-34688163 ( 66) TCTACTTC 1 chr1:161286307-161286387 ( 34) TCTGCTTT 1 chr1:208409467-208409547 ( 58) TCTGGCTT 1 chr3:72235385-72235465 ( 20) TCTAGTTT 1 chr1:166662578-166662658 ( 56) TTTGGTTC 1 chr2:26972773-26972853 ( 53) TCTGCCTT 1 chr9:99994453-99994533 ( 62) TCTGCCTT 1 chr6:3055074-3055154 ( 57) TCTGCCTT 1 chr10:52115913-52115993 ( 69) TCTGCCTT 1 chr5:67715664-67715744 ( 41) TCTTGTTC 1 chr10:50465389-50465469 ( 43) TTTGGTTT 1 chr2:70483177-70483257 ( 71) TTTGGTTT 1 chr7:150708022-150708102 ( 37) CCTGCTTC 1 chr1:156663792-156663872 ( 21) CCTTGTTC 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TCTGSTTC MEME-4 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 18250 bayes= 9.04855 E= 3.7e-009 -1210 -245 -1210 197 -1210 191 -1210 -184 -1210 -1210 -1210 204 -15 -1210 151 -242 -1210 55 131 -1210 -1210 14 -1210 158 -1210 -1210 -1210 204 -1210 160 -1210 4 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TCTGSTTC MEME-4 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 44 E= 3.7e-009 0.000000 0.045455 0.000000 0.954545 0.000000 0.931818 0.000000 0.068182 0.000000 0.000000 0.000000 1.000000 0.227273 0.000000 0.727273 0.045455 0.000000 0.363636 0.636364 0.000000 0.000000 0.272727 0.000000 0.727273 0.000000 0.000000 0.000000 1.000000 0.000000 0.750000 0.000000 0.250000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TCTGSTTC MEME-4 regular expression -------------------------------------------------------------------------------- TCT[GA][GC][TC]T[CT] -------------------------------------------------------------------------------- Time 15.48 secs. ******************************************************************************** ******************************************************************************** MOTIF SCACGTGS MEME-5 width = 8 sites = 55 llr = 427 E-value = 6.7e-009 ******************************************************************************** -------------------------------------------------------------------------------- Motif SCACGTGS MEME-5 Description -------------------------------------------------------------------------------- Simplified A 1:a:31:: pos.-specific C 5a:7:::3 probability G 4:::7:a5 matrix T :::3:9:2 bits 2.0 ** * 1.8 ** * 1.6 ** ** 1.4 ** ** Relative 1.2 ****** Entropy 1.0 ****** (11.2 bits) 0.8 ****** 0.6 ******** 0.4 ******** 0.2 ******** 0.0 -------- Multilevel CCACGTGG consensus G TA C sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif SCACGTGS MEME-5 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr11:3863029-3863109 24 1.57e-05 tgagcgccta ccacgtgg agagagctaa chr12:107378538-10737861 43 1.57e-05 gtctccccaa ccacgtgg cactgtaagt chr1:12601770-12601850 54 1.57e-05 CCGTGGGGCT CCACGTGG CCCTCCCTCA chr14:24785550-24785630 18 1.57e-05 GGCTGCCCTA CCACGTGG TGAACCTGGC chr14:102554842-10255492 52 1.57e-05 AAACTAGCAG CCACGTGG CGCGGGCCCC chr17:40469525-40469605 49 1.57e-05 TTAACAGCCT CCACGTGG TCTGAGCATT chr19:41197197-41197277 64 3.20e-05 CAGGTGGTCA GCACGTGG GGGGGGGTG chr17:38264585-38264665 62 3.20e-05 AGGGGGTGGG GCACGTGG CCCTGCCCGA chr20:23120323-23120403 38 3.20e-05 GACGCGTCAG GCACGTGG TGTTGGCATT chr11:14664620-14664700 33 3.20e-05 TCAAGAACGT GCACGTGG AGTGCTACTA chr3:38040022-38040102 48 3.20e-05 TGTAAAAGGG GCACGTGG CCCTGCCTTC chr5:176544072-176544152 41 4.72e-05 GCTGTGCTGG CCACGTGC ACCCGGCTGG chr10:74076896-74076976 27 4.72e-05 TAGCCCAAGG CCACGTGC GGCGATGGCA chr4:6895506-6895586 33 4.72e-05 CTAACATAAA CCACGTGC GGTATGTGGC chr17:53529928-53530008 46 4.72e-05 TCTGCTGCCT CCACGTGC TCTGCTCACA chr6:6886821-6886901 21 6.30e-05 CACGCCAGGG GCACGTGC ACGTTTTAGA chr1:179029859-179029939 39 6.30e-05 aggtcaaaag gcacgtgc attttaagtt chr17:40466044-40466124 12 6.30e-05 AGCCCATCCA GCACGTGC TAGGTGTTCC chrX:48797800-48797880 63 7.84e-05 GTAGAAACAA CCATGTGG CCTTCACTCT chr9:101836383-101836463 66 1.09e-04 tctttgccag ccacgtgt acagtaa chr14:34513195-34513275 58 1.09e-04 AGCCCACAGG CCACATGG AGGGCAGAGG chr4:129607274-129607354 31 1.25e-04 ctcctagtgg gcatgtgg gcccttaact chr12:70484884-70484964 21 1.25e-04 ctcctaacga gcatgtgg gcccttagct chr22:39688922-39689002 43 1.25e-04 CATTCACCCA GCATGTGG ATCCAAGCCC chr17:79632863-79632943 11 1.56e-04 gtgcactcaa gcacatgg tggGGGGTGG chr17:3907964-3908044 35 1.56e-04 TACAGCGTAG GCACGTGT TTCCACCTTT chr5:142599392-142599472 27 1.56e-04 ggGTTCCGAA GCACATGG TCTGGCACAT chrX:39966753-39966833 53 1.56e-04 CCTGTCAGTC GCACATGG CCTTGGTGCT chr17:40260283-40260363 70 1.56e-04 CTAGtgtaag gcacatgg acg chr10:52304758-52304838 44 1.56e-04 GAAAATGGTA GCACGTGT ACAATAAAAG chr9:114957491-114957571 50 1.71e-04 CCATCAATGT CCATGTGC TAAGCTGATC chr19:52053055-52053135 33 1.71e-04 aggtttttaa ccatgtgc tggactcctc chr8:145023877-145023957 59 1.71e-04 GGCGGCCAGG CCATGTGC TGGAGGAGGG chr7:106750488-106750568 49 1.71e-04 gagagataat ccatgtgc ttgggagaca chr7:104771943-104772023 68 1.71e-04 ACCTATCTGG CCATGTGC TGACT chr11:125424118-12542419 3 1.71e-04 tg ccatgtgc tctccagacc chr19:10923841-10923921 11 1.86e-04 AGAACGATCC CCACATGC TCGTCATTAT chr20:49092618-49092698 18 2.02e-04 TAAATTCAAG GCATGTGC CACATCCTTG chr11:65243902-65243982 22 2.33e-04 TGGTCTGACC ACACGTGG TGGCAGCATT chr13:23388691-23388771 68 2.33e-04 ttttccccac aCACGTGG CAGGG chr12:31985814-31985894 8 2.33e-04 tgcatct gcacatgc ctgggattgg chr10:52352879-52352959 8 2.33e-04 cagagat acacgtgg gaaagaactg chr2:183814366-183814446 23 2.33e-04 gtacttgctg gcacatgc ctgtagtccc chr11:85873453-85873533 4 2.79e-04 TCT CCATGTGT GCCAGCATTC chr2:32817267-32817347 39 2.79e-04 AGGAAAGTGG CCATGTGT TCTCTGACTT chr18:33460925-33461005 46 2.94e-04 gctaagaaac ccacatgt gcactagaaa chr10:50433551-50433631 23 2.94e-04 GCGGGCCGGG CCACATGT ACTCACGTTA chr2:85725175-85725255 65 3.25e-04 ctttaaggaa gcatatgg atccccaa chr2:152616956-152617036 48 3.40e-04 AAGGAATGGG GCACATGT CAATTCAAAA chr11:118910739-11891081 15 3.40e-04 agttgacaca gcacatgt ctcagggagc chr8:61968481-61968561 14 3.86e-04 accacgctta acatgtgg ctcccagcac chr5:67715664-67715744 9 4.16e-04 GTGCAGTC ACACATGG AGGAAAGCCC chr7:158798516-158798596 73 4.33e-04 TTGACATCAC CCACGAGG chr1:39851449-39851529 19 4.33e-04 AGCAGTTAGA CCACGAGG TTAAGGAGGC chr16:68118483-68118563 7 5.42e-04 TGATTG GCACGAGC TCACAACGGG -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif SCACGTGS MEME-5 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr11:3863029-3863109 1.6e-05 23_[+5]_49 chr12:107378538-10737861 1.6e-05 42_[+5]_30 chr1:12601770-12601850 1.6e-05 53_[+5]_19 chr14:24785550-24785630 1.6e-05 17_[+5]_55 chr14:102554842-10255492 1.6e-05 51_[+5]_21 chr17:40469525-40469605 1.6e-05 48_[+5]_24 chr19:41197197-41197277 3.2e-05 63_[+5]_9 chr17:38264585-38264665 3.2e-05 61_[+5]_11 chr20:23120323-23120403 3.2e-05 37_[+5]_35 chr11:14664620-14664700 3.2e-05 32_[+5]_40 chr3:38040022-38040102 3.2e-05 47_[+5]_25 chr5:176544072-176544152 4.7e-05 40_[+5]_32 chr10:74076896-74076976 4.7e-05 26_[+5]_46 chr4:6895506-6895586 4.7e-05 32_[+5]_40 chr17:53529928-53530008 4.7e-05 45_[+5]_27 chr6:6886821-6886901 6.3e-05 20_[+5]_52 chr1:179029859-179029939 6.3e-05 38_[+5]_34 chr17:40466044-40466124 6.3e-05 11_[+5]_61 chrX:48797800-48797880 7.8e-05 62_[+5]_10 chr9:101836383-101836463 0.00011 65_[+5]_7 chr14:34513195-34513275 0.00011 57_[+5]_15 chr4:129607274-129607354 0.00012 30_[+5]_42 chr12:70484884-70484964 0.00012 20_[+5]_52 chr22:39688922-39689002 0.00012 42_[+5]_30 chr17:79632863-79632943 0.00016 10_[+5]_62 chr17:3907964-3908044 0.00016 34_[+5]_38 chr5:142599392-142599472 0.00016 26_[+5]_46 chrX:39966753-39966833 0.00016 52_[+5]_20 chr17:40260283-40260363 0.00016 69_[+5]_3 chr10:52304758-52304838 0.00016 43_[+5]_29 chr9:114957491-114957571 0.00017 49_[+5]_23 chr19:52053055-52053135 0.00017 32_[+5]_40 chr8:145023877-145023957 0.00017 58_[+5]_14 chr7:106750488-106750568 0.00017 48_[+5]_24 chr7:104771943-104772023 0.00017 67_[+5]_5 chr11:125424118-12542419 0.00017 2_[+5]_70 chr19:10923841-10923921 0.00019 10_[+5]_62 chr20:49092618-49092698 0.0002 17_[+5]_55 chr11:65243902-65243982 0.00023 21_[+5]_51 chr13:23388691-23388771 0.00023 67_[+5]_5 chr12:31985814-31985894 0.00023 7_[+5]_65 chr10:52352879-52352959 0.00023 7_[+5]_65 chr2:183814366-183814446 0.00023 22_[+5]_50 chr11:85873453-85873533 0.00028 3_[+5]_69 chr2:32817267-32817347 0.00028 38_[+5]_34 chr18:33460925-33461005 0.00029 45_[+5]_27 chr10:50433551-50433631 0.00029 22_[+5]_50 chr2:85725175-85725255 0.00032 64_[+5]_8 chr2:152616956-152617036 0.00034 47_[+5]_25 chr11:118910739-11891081 0.00034 14_[+5]_58 chr8:61968481-61968561 0.00039 13_[+5]_59 chr5:67715664-67715744 0.00042 8_[+5]_64 chr7:158798516-158798596 0.00043 72_[+5] chr1:39851449-39851529 0.00043 18_[+5]_54 chr16:68118483-68118563 0.00054 6_[+5]_66 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif SCACGTGS MEME-5 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF SCACGTGS width=8 seqs=55 chr11:3863029-3863109 ( 24) CCACGTGG 1 chr12:107378538-10737861 ( 43) CCACGTGG 1 chr1:12601770-12601850 ( 54) CCACGTGG 1 chr14:24785550-24785630 ( 18) CCACGTGG 1 chr14:102554842-10255492 ( 52) CCACGTGG 1 chr17:40469525-40469605 ( 49) CCACGTGG 1 chr19:41197197-41197277 ( 64) GCACGTGG 1 chr17:38264585-38264665 ( 62) GCACGTGG 1 chr20:23120323-23120403 ( 38) GCACGTGG 1 chr11:14664620-14664700 ( 33) GCACGTGG 1 chr3:38040022-38040102 ( 48) GCACGTGG 1 chr5:176544072-176544152 ( 41) CCACGTGC 1 chr10:74076896-74076976 ( 27) CCACGTGC 1 chr4:6895506-6895586 ( 33) CCACGTGC 1 chr17:53529928-53530008 ( 46) CCACGTGC 1 chr6:6886821-6886901 ( 21) GCACGTGC 1 chr1:179029859-179029939 ( 39) GCACGTGC 1 chr17:40466044-40466124 ( 12) GCACGTGC 1 chrX:48797800-48797880 ( 63) CCATGTGG 1 chr9:101836383-101836463 ( 66) CCACGTGT 1 chr14:34513195-34513275 ( 58) CCACATGG 1 chr4:129607274-129607354 ( 31) GCATGTGG 1 chr12:70484884-70484964 ( 21) GCATGTGG 1 chr22:39688922-39689002 ( 43) GCATGTGG 1 chr17:79632863-79632943 ( 11) GCACATGG 1 chr17:3907964-3908044 ( 35) GCACGTGT 1 chr5:142599392-142599472 ( 27) GCACATGG 1 chrX:39966753-39966833 ( 53) GCACATGG 1 chr17:40260283-40260363 ( 70) GCACATGG 1 chr10:52304758-52304838 ( 44) GCACGTGT 1 chr9:114957491-114957571 ( 50) CCATGTGC 1 chr19:52053055-52053135 ( 33) CCATGTGC 1 chr8:145023877-145023957 ( 59) CCATGTGC 1 chr7:106750488-106750568 ( 49) CCATGTGC 1 chr7:104771943-104772023 ( 68) CCATGTGC 1 chr11:125424118-12542419 ( 3) CCATGTGC 1 chr19:10923841-10923921 ( 11) CCACATGC 1 chr20:49092618-49092698 ( 18) GCATGTGC 1 chr11:65243902-65243982 ( 22) ACACGTGG 1 chr13:23388691-23388771 ( 68) ACACGTGG 1 chr12:31985814-31985894 ( 8) GCACATGC 1 chr10:52352879-52352959 ( 8) ACACGTGG 1 chr2:183814366-183814446 ( 23) GCACATGC 1 chr11:85873453-85873533 ( 4) CCATGTGT 1 chr2:32817267-32817347 ( 39) CCATGTGT 1 chr18:33460925-33461005 ( 46) CCACATGT 1 chr10:50433551-50433631 ( 23) CCACATGT 1 chr2:85725175-85725255 ( 65) GCATATGG 1 chr2:152616956-152617036 ( 48) GCACATGT 1 chr11:118910739-11891081 ( 15) GCACATGT 1 chr8:61968481-61968561 ( 14) ACATGTGG 1 chr5:67715664-67715744 ( 9) ACACATGG 1 chr7:158798516-158798596 ( 73) CCACGAGG 1 chr1:39851449-39851529 ( 19) CCACGAGG 1 chr16:68118483-68118563 ( 7) GCACGAGC 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif SCACGTGS MEME-5 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 18250 bayes= 8.95894 E= 6.7e-009 -147 93 77 -1243 -1243 201 -1243 -1243 199 -1243 -1243 -1243 -1243 155 -1243 16 1 -1243 154 -1243 -221 -1243 -1243 196 -1243 -1243 197 -1243 -1243 40 99 -57 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif SCACGTGS MEME-5 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 55 E= 6.7e-009 0.090909 0.472727 0.436364 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.727273 0.000000 0.272727 0.254545 0.000000 0.745455 0.000000 0.054545 0.000000 0.000000 0.945455 0.000000 0.000000 1.000000 0.000000 0.000000 0.327273 0.509091 0.163636 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif SCACGTGS MEME-5 regular expression -------------------------------------------------------------------------------- [CG]CA[CT][GA]TG[GC] -------------------------------------------------------------------------------- Time 18.96 secs. ******************************************************************************** ******************************************************************************** SUMMARY OF MOTIFS ******************************************************************************** -------------------------------------------------------------------------------- Combined block diagrams: non-overlapping sites with p-value < 0.0001 -------------------------------------------------------------------------------- SEQUENCE NAME COMBINED P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr1:161286307-161286387 3.03e-03 18_[+2(1.57e-05)]_54 chr14:102154574-10215465 4.51e-01 80 chr1:11941209-11941289 6.49e-01 80 chr20:45264272-45264352 2.98e-03 6_[+3(6.58e-05)]_2_[+1(1.48e-05)]_\ 56 chr7:135625275-135625355 5.30e-02 39_[+1(2.93e-05)]_33 chr4:4032356-4032436 1.10e-04 58_[+4(4.26e-05)]_14 chr17:40469525-40469605 1.09e-02 48_[+5(1.57e-05)]_24 chr1:95550092-95550172 2.07e-01 80 chr3:178750821-178750901 7.92e-01 80 chr16:21531960-21532040 1.03e-01 20_[+2(4.75e-05)]_52 chr14:23194773-23194853 6.47e-04 16_[+2(1.57e-05)]_56 chr6:47384590-47384670 6.08e-03 61_[+2(1.57e-05)]_11 chr10:52115913-52115993 4.71e-03 35_[+1(1.48e-05)]_37 chr10:52304758-52304838 2.94e-02 80 chr19:3613138-3613218 3.25e-01 80 chr17:53529928-53530008 1.29e-02 45_[+5(4.72e-05)]_27 chr17:40260283-40260363 4.10e-02 80 chr11:71423975-71424055 1.45e-04 50_[+3(1.65e-05)]_2_[+1(1.48e-05)]_\ 12 chr4:38319029-38319109 1.13e-03 48_[+3(6.58e-05)]_2_[+1(2.93e-05)]_\ 14 chr11:125424118-12542419 3.01e-01 80 chr16:87903291-87903371 9.94e-02 24_[+2(4.75e-05)]_48 chr16:29625216-29625296 9.94e-02 32_[+2(4.75e-05)]_40 chr11:3530995-3531075 2.97e-05 13_[+2(1.57e-05)]_2_[+4(4.26e-05)]_\ 49 chr8:2590231-2590311 1.83e-01 80 chr1:8182247-8182327 2.21e-01 80 chr2:183814366-183814446 9.80e-02 80 chr6:34688083-34688163 2.21e-04 50_[+2(1.57e-05)]_22 chr10:12307545-12307625 9.50e-04 15_[+2(3.12e-05)]_2_[+4(1.43e-05)]_\ 47 chr3:38040022-38040102 7.46e-03 47_[+5(3.20e-05)]_25 chr19:35411103-35411183 4.74e-03 42_[+1(1.48e-05)]_30 chr19:18429116-18429196 1.81e-01 80 chr7:104771943-104772023 3.48e-02 80 chr10:17605614-17605694 3.79e-03 40_[+2(1.57e-05)]_32 chrX:49012792-49012872 4.39e-01 80 chr6:34458993-34459073 3.81e-01 80 chr17:6897609-6897689 8.38e-01 80 chr12:685469-685549 8.35e-01 80 chrX:39966753-39966833 1.55e-01 80 chr3:186605593-186605673 1.25e-01 80 chr1:1167956-1168036 5.37e-01 80 chr7:45031976-45032056 1.94e-04 52_[+2(1.57e-05)]_20 chr10:50385590-50385670 1.69e-02 38_[+1(8.74e-05)]_34 chr1:156725464-156725544 5.80e-02 48_[+1(7.24e-05)]_24 chr14:102554842-10255492 5.62e-02 51_[+5(1.57e-05)]_21 chr3:101350909-101350989 1.25e-04 29_[+3(1.65e-05)]_2_[+1(1.48e-05)]_\ 33 chr2:70483177-70483257 7.40e-04 62_[+1(1.48e-05)]_10 chr17:40466044-40466124 1.62e-01 11_[+5(6.30e-05)]_61 chr17:62962024-62962104 1.80e-01 80 chr19:47848374-47848454 4.20e-04 36_[+2(1.57e-05)]_2_[+4(1.43e-05)]_\ 26 chr5:142599392-142599472 1.33e-02 80 chr22:39688922-39689002 5.61e-02 80 chr1:179029859-179029939 3.27e-02 38_[+5(6.30e-05)]_34 chr11:14664620-14664700 1.64e-02 32_[+5(3.20e-05)]_19_[+5(4.72e-05)]_\ 13 chr11:118910739-11891081 1.35e-02 62_[+2(1.57e-05)]_10 chr6:10750946-10751026 2.97e-05 9_[+2(1.57e-05)]_2_[+4(4.26e-05)]_\ 53 chr10:49679391-49679471 5.93e-01 80 chr7:106750488-106750568 6.30e-03 80 chr4:6736249-6736329 4.97e-01 80 chr14:35817174-35817254 1.34e-04 44_[+3(1.65e-05)]_2_[+1(1.48e-05)]_\ 18 chr8:145023877-145023957 3.46e-02 80 chr3:44509792-44509872 1.24e-02 13_[+1(2.93e-05)]_59 chr10:52352879-52352959 2.58e-01 80 chr6:30843106-30843186 5.95e-01 80 chr19:38943476-38943556 2.32e-01 80 chr1:211396337-211396417 2.21e-04 33_[+2(1.57e-05)]_39 chr6:44169709-44169789 3.98e-01 80 chr7:45028880-45028960 1.36e-02 30_[+2(3.12e-05)]_42 chr1:249124754-249124834 5.47e-03 52_[+1(1.48e-05)]_20 chr6:3055074-3055154 4.71e-03 23_[+1(1.48e-05)]_49 chr1:16276345-16276425 3.11e-01 80 chr1:223972447-223972527 3.36e-02 26_[+2(7.99e-05)]_46 chr1:2129299-2129379 1.65e-01 80 chr17:15430276-15430356 7.91e-03 41_[+2(3.12e-05)]_31 chr1:160986620-160986700 1.78e-02 68_[+1(1.48e-05)]_4 chr12:27971692-27971772 1.40e-01 80 chr22:29136255-29136335 1.84e-01 80 chr9:99994453-99994533 8.05e-04 28_[+1(1.48e-05)]_44 chr3:129895913-129895993 3.12e-05 44_[+2(1.57e-05)]_2_[+4(4.26e-05)]_\ 18 chr12:70484884-70484964 1.56e-03 43_[+1(4.34e-05)]_29 chr19:12993632-12993712 4.76e-02 48_[+1(2.93e-05)]_24 chr2:32817267-32817347 3.93e-02 80 chr17:37490262-37490342 6.78e-01 80 chr7:66313579-66313659 3.91e-02 22_[+2(3.12e-05)]_50 chr8:59573571-59573651 3.58e-01 80 chr6:161632056-161632136 7.36e-03 40_[+2(1.57e-05)]_32 chr6:27743095-27743175 2.21e-04 40_[+2(1.57e-05)]_32 chr11:9341153-9341233 6.47e-04 30_[+2(1.57e-05)]_42 chr22:22378233-22378313 6.25e-05 35_[+2(1.57e-05)]_2_[+4(1.43e-05)]_\ 27 chr2:86117744-86117824 1.06e-03 4_[+2(7.99e-05)]_2_[+4(7.08e-05)]_\ 58 chr6:36852553-36852633 6.88e-03 7_[+2(1.57e-05)]_65 chr3:45587101-45587181 3.21e-01 80 chr19:56858881-56858961 1.56e-04 22_[+4(4.26e-05)]_50 chr15:35286188-35286268 3.31e-02 40_[+2(1.57e-05)]_32 chr4:68568105-68568185 5.57e-05 36_[+1(2.93e-05)]_[+4(7.08e-05)]_28 chr8:144823871-144823951 3.21e-02 80 chr1:39851449-39851529 8.19e-02 80 chr9:100812793-100812873 1.40e-03 36_[+1(1.48e-05)]_36 chr21:38711102-38711182 1.83e-01 80 chr8:69065236-69065316 9.66e-02 38_[+1(1.48e-05)]_34 chr6:30291126-30291206 8.45e-03 30_[+2(1.57e-05)]_42 chr17:75084058-75084138 6.12e-04 23_[+2(3.12e-05)]_2_[+4(1.43e-05)]_\ 39 chr6:157939920-157940000 5.86e-01 80 chr7:22162912-22162992 8.76e-02 80 chr6:37173213-37173293 5.23e-01 80 chr1:212376038-212376118 1.88e-01 80 chr5:95043436-95043516 3.11e-05 32_[+2(1.57e-05)]_2_[+4(4.26e-05)]_\ 30 chr19:10923841-10923921 1.87e-01 80 chr16:11348813-11348893 6.32e-01 80 chr6:27028034-27028114 2.54e-01 80 chr1:31574161-31574241 8.62e-01 80 chr4:6895506-6895586 5.73e-02 32_[+5(4.72e-05)]_40 chr12:107427708-10742778 3.96e-03 25_[+3(6.58e-05)]_2_[+1(1.48e-05)]_\ 37 chr10:50433551-50433631 1.28e-01 80 chr7:140186649-140186729 5.52e-01 80 chr20:23120323-23120403 3.38e-03 37_[+5(3.20e-05)]_35 chr17:17753451-17753531 4.95e-01 80 chr9:80507977-80508057 2.85e-03 38_[+1(1.48e-05)]_34 chr15:34948382-34948462 2.17e-03 26_[+3(6.58e-05)]_2_[+1(2.93e-05)]_\ 36 chr7:158411150-158411230 8.60e-01 80 chr20:49125549-49125629 2.97e-03 55_[+1(1.48e-05)]_17 chr8:59585114-59585194 9.23e-02 80 chr9:102796306-102796386 2.44e-03 22_[+1(1.48e-05)]_50 chr20:45828639-45828719 1.45e-04 35_[+3(1.65e-05)]_2_[+1(1.48e-05)]_\ 27 chr12:132109872-13210995 2.29e-04 37_[+3(1.65e-05)]_2_[+1(1.48e-05)]_\ 25 chr20:9006486-9006566 1.10e-02 33_[+1(2.93e-05)]_39 chr11:77356109-77356189 2.72e-02 61_[+2(3.12e-05)]_11 chr11:3425717-3425797 2.75e-01 80 chr19:50082595-50082675 3.25e-03 26_[+2(4.75e-05)]_46 chr7:150708022-150708102 1.43e-02 80 chr4:144284007-144284087 3.63e-04 34_[+2(1.57e-05)]_2_[+4(1.43e-05)]_\ 28 chr14:24785550-24785630 4.71e-03 17_[+5(1.57e-05)]_55 chr15:89463595-89463675 9.13e-03 24_[+1(1.48e-05)]_48 chr17:38264585-38264665 3.38e-02 61_[+5(3.20e-05)]_11 chr8:37929491-37929571 9.91e-05 23_[+3(6.58e-05)]_[+2(3.12e-05)]_2_\ [+4(4.26e-05)]_31 chr17:25435128-25435208 4.98e-02 46_[+2(6.34e-05)]_26 chr17:35716693-35716773 1.30e-02 47_[+1(2.93e-05)]_25 chr7:158798516-158798596 8.81e-02 80 chr1:26635097-26635177 1.08e-01 80 chr8:62791555-62791635 7.79e-02 80 chr2:10436408-10436488 1.43e-03 42_[+2(1.57e-05)]_2_[+4(1.43e-05)]_\ 20 chr3:5124173-5124253 1.53e-03 4_[+2(1.57e-05)]_68 chr10:4909353-4909433 1.49e-02 25_[+2(1.57e-05)]_47 chr1:208409467-208409547 1.39e-02 80 chr21:44389449-44389529 1.32e-04 32_[+3(1.65e-05)]_2_[+1(1.48e-05)]_\ 30 chr7:149261862-149261942 1.80e-03 36_[+2(1.57e-05)]_24_[+3(6.58e-05)]_\ 4 chr7:14040923-14041003 1.10e-02 14_[+2(3.12e-05)]_58 chr1:12601770-12601850 9.36e-03 53_[+5(1.57e-05)]_19 chr12:107378538-10737861 8.46e-04 42_[+5(1.57e-05)]_30 chrX:67682141-67682221 3.20e-03 23_[+3(6.58e-05)]_2_[+1(1.48e-05)]_\ 39 chr19:33177926-33178006 2.56e-03 13_[+3(6.58e-05)]_2_[+1(2.93e-05)]_\ 49 chr4:127661938-127662018 6.16e-02 80 chr7:2996587-2996667 6.91e-01 80 chr2:173418284-173418364 2.40e-02 46_[+2(3.12e-05)]_26 chr11:125431981-12543206 8.56e-03 12_[+2(3.12e-05)]_60 chr2:152616956-152617036 8.76e-02 80 chr6:37175866-37175946 9.11e-01 80 chr10:74076896-74076976 5.87e-02 26_[+5(4.72e-05)]_46 chr19:52053055-52053135 1.68e-02 80 chr20:23117554-23117634 7.27e-01 80 chr1:166662578-166662658 8.03e-03 45_[+2(3.12e-05)]_27 chr16:23874056-23874136 1.27e-03 22_[+3(1.65e-05)]_2_[+1(1.48e-05)]_\ 40 chr3:53270217-53270297 6.64e-01 80 chr3:72235385-72235465 3.97e-02 80 chr14:35834827-35834907 6.32e-01 80 chr3:186728365-186728445 1.24e-04 42_[+3(1.65e-05)]_2_[+1(1.48e-05)]_\ 20 chr3:14314358-14314438 4.74e-03 48_[+1(1.48e-05)]_24 chr9:90125115-90125195 1.19e-03 80 chr6:158243854-158243934 2.53e-01 80 chr12:3793716-3793796 1.73e-02 11_[+1(7.24e-05)]_61 chr12:31985814-31985894 4.97e-03 32_[+1(1.48e-05)]_40 chr17:25896463-25896543 1.54e-02 15_[+3(6.58e-05)]_57 chr3:128266452-128266532 2.42e-01 80 chr8:61968481-61968561 4.06e-02 80 chr6:37150832-37150912 3.23e-01 80 chr8:29995099-29995179 1.68e-02 63_[+1(2.93e-05)]_9 chr2:87816020-87816100 9.48e-02 80 chr7:75473164-75473244 1.48e-04 16_[+2(1.57e-05)]_2_[+4(1.43e-05)]_\ 46 chr11:85873453-85873533 1.67e-01 80 chr1:113360337-113360417 4.05e-02 17_[+2(1.57e-05)]_55 chr1:100001485-100001565 5.92e-03 46_[+2(3.12e-05)]_2_[+4(7.08e-05)]_\ 16 chr1:93250974-93251054 2.10e-01 80 chr1:113445009-113445089 1.21e-02 41_[+1(1.48e-05)]_31 chr19:35800835-35800915 6.28e-01 80 chr18:33460925-33461005 6.65e-03 21_[+2(6.34e-05)]_51 chr15:66125307-66125387 3.94e-02 80 chr8:41668878-41668958 1.24e-02 16_[+2(1.57e-05)]_56 chr17:70758208-70758288 3.31e-02 36_[+1(2.93e-05)]_36 chr3:45209123-45209203 1.28e-01 80 chr6:16044703-16044783 3.33e-03 14_[+2(3.12e-05)]_6_[+1(7.24e-05)]_\ 44 chr17:3907964-3908044 8.93e-02 80 chr12:31887105-31887185 4.45e-03 54_[+2(1.57e-05)]_18 chr5:148825470-148825550 9.34e-03 80 chr1:155277129-155277209 4.88e-03 16_[+3(6.58e-05)]_2_[+1(2.93e-05)]_\ 46 chr6:2980145-2980225 3.25e-03 21_[+3(6.58e-05)]_2_[+1(4.34e-05)]_\ 41 chr4:129607274-129607354 2.46e-03 53_[+1(4.34e-05)]_19 chr14:70164024-70164104 7.01e-01 80 chr1:235029602-235029682 5.38e-01 80 chr1:9835302-9835382 1.01e-03 16_[+2(1.57e-05)]_2_[+4(1.43e-05)]_\ 46 chr17:26904159-26904239 5.99e-01 80 chr10:49689059-49689139 5.70e-01 80 chr11:33963387-33963467 3.79e-02 6_[+3(6.58e-05)]_66 chr7:100724909-100724989 3.28e-04 4_[+4(2.81e-05)]_40_[+1(1.48e-05)]_\ 20 chr11:3863029-3863109 5.17e-02 23_[+5(1.57e-05)]_49 chr21:44391199-44391279 2.92e-03 33_[+1(1.48e-05)]_39 chr3:43814910-43814990 6.28e-01 80 chr5:67715664-67715744 7.36e-04 80 chr6:6886821-6886901 2.58e-02 20_[+5(6.30e-05)]_52 chr6:24401141-24401221 2.21e-04 34_[+2(1.57e-05)]_38 chr14:34513195-34513275 1.50e-02 80 chr13:23388691-23388771 2.18e-02 80 chr1:156663792-156663872 2.12e-01 80 chr9:101836383-101836463 5.70e-03 38_[+1(8.74e-05)]_34 chr5:176544072-176544152 1.12e-01 40_[+5(4.72e-05)]_32 chr7:150052910-150052990 1.96e-03 14_[+4(2.81e-05)]_40_[+1(1.48e-05)]_\ 10 chr1:1545377-1545457 6.61e-03 22_[+3(6.58e-05)]_50 chr19:41197197-41197277 1.00e-01 63_[+5(3.20e-05)]_9 chr6:37396500-37396580 4.33e-03 55_[+1(1.48e-05)]_17 chr1:207979346-207979426 2.75e-02 80 chr9:114957491-114957571 4.70e-03 80 chr20:49092618-49092698 2.11e-01 80 chr10:75939026-75939106 2.71e-04 40_[+3(1.65e-05)]_2_[+1(1.48e-05)]_\ 22 chr7:150019265-150019345 1.80e-03 49_[+3(8.21e-05)]_2_[+1(4.34e-05)]_\ 13 chr2:65058475-65058555 4.32e-01 80 chr2:26972773-26972853 3.92e-03 19_[+1(1.48e-05)]_53 chrX:62654807-62654887 4.96e-01 80 chr2:231519541-231519621 5.37e-03 59_[+1(2.93e-05)]_13 chr22:39168032-39168112 5.98e-03 4_[+3(6.58e-05)]_2_[+1(2.93e-05)]_\ 58 chr19:49385465-49385545 1.45e-02 39_[+1(2.93e-05)]_13_[+1(1.48e-05)]_\ 12 chr11:65243902-65243982 1.15e-01 80 chr2:196234088-196234168 2.13e-04 51_[+2(1.57e-05)]_2_[+4(1.43e-05)]_\ 11 chr11:33967512-33967592 8.17e-03 67_[+2(3.12e-05)]_5 chrX:48797800-48797880 6.72e-02 62_[+5(7.84e-05)]_10 chr11:96063797-96063877 7.01e-01 80 chr17:79632863-79632943 8.62e-02 80 chr2:85725175-85725255 3.89e-03 12_[+2(1.57e-05)]_60 chr3:69063912-69063992 1.21e-02 28_[+1(2.93e-05)]_44 chr14:69283170-69283250 8.35e-01 80 chr5:68387018-68387098 2.08e-02 2_[+2(3.12e-05)]_70 chr1:21939734-21939814 3.36e-01 80 chr3:44479430-44479510 8.13e-04 40_[+2(1.57e-05)]_2_[+4(1.43e-05)]_\ 22 chr2:170574048-170574128 2.09e-01 80 chr12:23052182-23052262 9.64e-02 80 chr10:50465389-50465469 5.20e-03 34_[+1(7.24e-05)]_38 chr16:4294432-4294512 3.25e-02 48_[+1(8.74e-05)]_24 chr9:132913285-132913365 1.10e-03 33_[+4(1.43e-05)]_39 chr6:2857951-2858031 5.79e-01 80 chr2:205219402-205219482 3.55e-02 14_[+2(1.57e-05)]_10_[+2(3.12e-05)]_\ 40 chr10:49614404-49614484 8.29e-02 80 chr16:68118483-68118563 3.16e-01 80 chr10:72475710-72475790 1.61e-01 80 -------------------------------------------------------------------------------- ******************************************************************************** ******************************************************************************** Stopped because requested number of motifs (5) found. ******************************************************************************** CPU: c22n09.farnam.hpc.yale.internal ********************************************************************************