******************************************************************************** MEME - Motif discovery tool ******************************************************************************** MEME version 5.3.3 (Release date: Sun Feb 7 15:39:52 2021 -0800) For further information on how to interpret these results please access https://meme-suite.org/meme. To get a copy of the MEME Suite software please access https://meme-suite.org. ******************************************************************************** ******************************************************************************** REFERENCE ******************************************************************************** If you use this program in your research, please cite: Timothy L. Bailey and Charles Elkan, "Fitting a mixture model by expectation maximization to discover motifs in biopolymers", Proceedings of the Second International Conference on Intelligent Systems for Molecular Biology, pp. 28-36, AAAI Press, Menlo Park, California, 1994. ******************************************************************************** ******************************************************************************** TRAINING SET ******************************************************************************** PRIMARY SEQUENCES= ../result/final_prediction/K562/fasta/RankLinear0.6_40/ZNF589.fasta CONTROL SEQUENCES= --none-- ALPHABET= ACGT Sequence name Weight Length Sequence name Weight Length ------------- ------ ------ ------------- ------ ------ chr7:150756083-150756163 1.0000 80 chr2:102875204-102875284 1.0000 80 chr10:91115232-91115312 1.0000 80 chr6:18242834-18242914 1.0000 80 chr5:43773361-43773441 1.0000 80 chr3:47266786-47266866 1.0000 80 chr12:65955734-65955814 1.0000 80 chr2:11262744-11262824 1.0000 80 chr18:9321102-9321182 1.0000 80 chr1:9138448-9138528 1.0000 80 chr2:167267547-167267627 1.0000 80 chr7:106457748-106457828 1.0000 80 chr5:141846214-141846294 1.0000 80 chr15:60314140-60314220 1.0000 80 chr20:3646633-3646713 1.0000 80 chr1:221896523-221896603 1.0000 80 chr7:129598952-129599032 1.0000 80 chr5:131793328-131793408 1.0000 80 chr5:31362439-31362519 1.0000 80 chr22:22378240-22378320 1.0000 80 chr7:105985927-105986007 1.0000 80 chr4:110795286-110795366 1.0000 80 chr8:20134432-20134512 1.0000 80 chr3:125919551-125919631 1.0000 80 chr1:221949868-221949948 1.0000 80 chr8:29474742-29474822 1.0000 80 chr8:1897661-1897741 1.0000 80 chr16:4501079-4501159 1.0000 80 chr11:221060-221140 1.0000 80 chr7:105987809-105987889 1.0000 80 chr17:45317569-45317649 1.0000 80 chr10:112935716-11293579 1.0000 80 chr2:109883687-109883767 1.0000 80 chr1:40367560-40367640 1.0000 80 chr7:120799831-120799911 1.0000 80 chr1:158985289-158985369 1.0000 80 chr17:76297540-76297620 1.0000 80 chrX:15901566-15901646 1.0000 80 chr7:106452557-106452637 1.0000 80 chr21:41214895-41214975 1.0000 80 chr17:46438345-46438425 1.0000 80 chr7:123633161-123633241 1.0000 80 chr5:169514576-169514656 1.0000 80 chr7:150756563-150756643 1.0000 80 chr2:208176484-208176564 1.0000 80 chr13:61158205-61158285 1.0000 80 chr14:35834896-35834976 1.0000 80 chr8:29474945-29475025 1.0000 80 chr17:46438817-46438897 1.0000 80 chr6:69345059-69345139 1.0000 80 chr21:39786032-39786112 1.0000 80 chr17:47154388-47154468 1.0000 80 chr1:119506153-119506233 1.0000 80 chr2:152824773-152824853 1.0000 80 chr9:110438232-110438312 1.0000 80 chr4:38969008-38969088 1.0000 80 chr2:131622444-131622524 1.0000 80 chr7:77256118-77256198 1.0000 80 chr7:24818334-24818414 1.0000 80 chr7:29659598-29659678 1.0000 80 chr11:13299093-13299173 1.0000 80 chr17:72459568-72459648 1.0000 80 chr3:45147771-45147851 1.0000 80 chr10:15356059-15356139 1.0000 80 chr15:29965589-29965669 1.0000 80 chr8:144016068-144016148 1.0000 80 chr7:106183514-106183594 1.0000 80 chr9:101558837-101558917 1.0000 80 chr6:43538825-43538905 1.0000 80 chr4:186217951-186218031 1.0000 80 chr7:116593778-116593858 1.0000 80 chr5:88179056-88179136 1.0000 80 chr1:94480716-94480796 1.0000 80 chr12:76116567-76116647 1.0000 80 chr7:134047524-134047604 1.0000 80 chr2:10091558-10091638 1.0000 80 chr10:15669699-15669779 1.0000 80 chr19:11071600-11071680 1.0000 80 chr3:185529543-185529623 1.0000 80 chr21:30164076-30164156 1.0000 80 chr20:33893571-33893651 1.0000 80 chr3:154794881-154794961 1.0000 80 chr1:223079699-223079779 1.0000 80 chr15:68193178-68193258 1.0000 80 chr1:119506487-119506567 1.0000 80 chr1:205140008-205140088 1.0000 80 chr12:50124470-50124550 1.0000 80 chr19:15408458-15408538 1.0000 80 chr4:80773552-80773632 1.0000 80 chr10:125701742-12570182 1.0000 80 chr17:56991452-56991532 1.0000 80 chr2:199079004-199079084 1.0000 80 chr6:37941218-37941298 1.0000 80 chr14:93042197-93042277 1.0000 80 chr1:207536476-207536556 1.0000 80 chr17:41430093-41430173 1.0000 80 chr15:41769728-41769808 1.0000 80 chr15:68193386-68193466 1.0000 80 chr1:89636360-89636440 1.0000 80 chr16:77773537-77773617 1.0000 80 chr6:14077530-14077610 1.0000 80 chr2:65893404-65893484 1.0000 80 chr18:20048333-20048413 1.0000 80 chr8:94886447-94886527 1.0000 80 chr11:35358781-35358861 1.0000 80 chr20:46768484-46768564 1.0000 80 chr3:177766649-177766729 1.0000 80 chr4:154458952-154459032 1.0000 80 chr12:13441532-13441612 1.0000 80 chr11:14916800-14916880 1.0000 80 chr7:25967352-25967432 1.0000 80 chr3:39326249-39326329 1.0000 80 chr12:127388139-12738821 1.0000 80 chr12:132090143-13209022 1.0000 80 chr11:20000320-20000400 1.0000 80 chr2:152899177-152899257 1.0000 80 chr4:75398109-75398189 1.0000 80 chr20:30101798-30101878 1.0000 80 chr7:98741761-98741841 1.0000 80 chr15:41769525-41769605 1.0000 80 chr1:222135840-222135920 1.0000 80 chr22:48041334-48041414 1.0000 80 chr12:31771228-31771308 1.0000 80 chr4:57566987-57567067 1.0000 80 chr1:18748635-18748715 1.0000 80 chr7:13889210-13889290 1.0000 80 chr5:102393008-102393088 1.0000 80 chr18:5296170-5296250 1.0000 80 chr12:109611695-10961177 1.0000 80 chr17:77007704-77007784 1.0000 80 chr3:186619115-186619195 1.0000 80 chr9:110310778-110310858 1.0000 80 chr8:90809074-90809154 1.0000 80 chr1:247531189-247531269 1.0000 80 chr3:32090158-32090238 1.0000 80 chr21:46238039-46238119 1.0000 80 chr2:70141854-70141934 1.0000 80 chr3:125919753-125919833 1.0000 80 chr19:4342879-4342959 1.0000 80 chr1:181143020-181143100 1.0000 80 chr9:88798424-88798504 1.0000 80 chr8:28982989-28983069 1.0000 80 chr7:127877314-127877394 1.0000 80 chr16:12704977-12705057 1.0000 80 chrX:67682130-67682210 1.0000 80 chr9:114987105-114987185 1.0000 80 chr20:39577467-39577547 1.0000 80 chr7:123262890-123262970 1.0000 80 chrX:3619582-3619662 1.0000 80 chr16:17684952-17685032 1.0000 80 chr7:16532483-16532563 1.0000 80 chr12:109232235-10923231 1.0000 80 chr10:52346306-52346386 1.0000 80 chr17:6822507-6822587 1.0000 80 chr1:204894950-204895030 1.0000 80 chr17:3907973-3908053 1.0000 80 chr17:46438545-46438625 1.0000 80 chr21:36590167-36590247 1.0000 80 chr12:31887151-31887231 1.0000 80 chr10:74076902-74076982 1.0000 80 chr5:36703537-36703617 1.0000 80 chr20:343123-343203 1.0000 80 chr11:100885499-10088557 1.0000 80 chr6:164758824-164758904 1.0000 80 chr2:46295043-46295123 1.0000 80 chr19:18303753-18303833 1.0000 80 chr9:101614431-101614511 1.0000 80 chr6:31364693-31364773 1.0000 80 chr12:131847296-13184737 1.0000 80 chr2:70161554-70161634 1.0000 80 chr5:148533435-148533515 1.0000 80 chr6:136726785-136726865 1.0000 80 chr20:23137027-23137107 1.0000 80 chr16:87421717-87421797 1.0000 80 chr14:103000329-10300040 1.0000 80 chr12:127437991-12743807 1.0000 80 chr1:204141127-204141207 1.0000 80 chr9:139098860-139098940 1.0000 80 chr1:116417341-116417421 1.0000 80 chr19:6060113-6060193 1.0000 80 chr12:122818299-12281837 1.0000 80 chr17:46903266-46903346 1.0000 80 chr1:167795003-167795083 1.0000 80 chr17:47910419-47910499 1.0000 80 chr11:46143084-46143164 1.0000 80 chr14:64830109-64830189 1.0000 80 chr4:74962581-74962661 1.0000 80 chr2:122003587-122003667 1.0000 80 chr2:183900593-183900673 1.0000 80 chr6:27968269-27968349 1.0000 80 chr20:34671542-34671622 1.0000 80 chr5:179051470-179051550 1.0000 80 chr3:101362781-101362861 1.0000 80 chr17:46133341-46133421 1.0000 80 chr16:2264914-2264994 1.0000 80 chr10:3933010-3933090 1.0000 80 chr6:147770879-147770959 1.0000 80 chr3:45209109-45209189 1.0000 80 chr1:25407061-25407141 1.0000 80 chr20:42087059-42087139 1.0000 80 chr12:128801835-12880191 1.0000 80 chr11:63302443-63302523 1.0000 80 chr21:27472126-27472206 1.0000 80 chr1:150588050-150588130 1.0000 80 chr12:96476887-96476967 1.0000 80 chr10:4868234-4868314 1.0000 80 chr2:128685152-128685232 1.0000 80 chr16:50491937-50492017 1.0000 80 chr2:205219397-205219477 1.0000 80 chr1:212651640-212651720 1.0000 80 chr14:58765062-58765142 1.0000 80 chr12:31771428-31771508 1.0000 80 chr3:37866004-37866084 1.0000 80 chr2:172435101-172435181 1.0000 80 chr1:181143221-181143301 1.0000 80 chr19:52290328-52290408 1.0000 80 chr3:44482949-44483029 1.0000 80 chr16:55410653-55410733 1.0000 80 chr6:91167307-91167387 1.0000 80 chr12:33099606-33099686 1.0000 80 chr6:150639001-150639081 1.0000 80 chr5:138862122-138862202 1.0000 80 chr15:57075509-57075589 1.0000 80 chr16:58467641-58467721 1.0000 80 chr8:38854408-38854488 1.0000 80 chr12:9803537-9803617 1.0000 80 chr7:84451405-84451485 1.0000 80 chr20:52534130-52534210 1.0000 80 chr3:39363607-39363687 1.0000 80 chr9:132913304-132913384 1.0000 80 chr3:39363931-39364011 1.0000 80 chr21:38939264-38939344 1.0000 80 chr4:74962377-74962457 1.0000 80 chr1:226277166-226277246 1.0000 80 chr8:98774866-98774946 1.0000 80 chr5:90587914-90587994 1.0000 80 chr4:79615513-79615593 1.0000 80 chr9:131843224-131843304 1.0000 80 chr4:100656053-100656133 1.0000 80 chr11:97844198-97844278 1.0000 80 chr5:5586006-5586086 1.0000 80 chr6:36258573-36258653 1.0000 80 chr8:20134642-20134722 1.0000 80 chr9:104603605-104603685 1.0000 80 chr10:50465381-50465461 1.0000 80 chr3:99495993-99496073 1.0000 80 chr6:43905135-43905215 1.0000 80 chr6:136748199-136748279 1.0000 80 chr3:45102725-45102805 1.0000 80 chr8:42010344-42010424 1.0000 80 ******************************************************************************** ******************************************************************************** COMMAND LINE SUMMARY ******************************************************************************** This information can also be useful in the event you wish to report a problem with the MEME software. command: meme -oc ../result/final_prediction/K562/inference_raw/MEME/RankLinear0.6_40_ZNF589/ -dna -nmotifs 5 -w 8 -maxsize 250000 -nostatus ../result/final_prediction/K562/fasta/RankLinear0.6_40/ZNF589.fasta model: mod= zoops nmotifs= 5 evt= inf objective function: em= E-value of product of p-values starts= E-value of product of p-values strands: + width: minw= 8 maxw= 8 nsites: minsites= 2 maxsites= 250 wnsites= 0.8 theta: spmap= uni spfuzz= 0.5 em: prior= dirichlet b= 0.01 maxiter= 50 distance= 1e-05 trim: wg= 11 ws= 1 endgaps= yes data: n= 20000 N= 250 sample: seed= 0 hsfrac= 0 searchsize= 20000 norand= no csites= 1000 Letter frequencies in dataset: A 0.252 C 0.243 G 0.251 T 0.254 Background letter frequencies (from file dataset with add-one prior applied): A 0.252 C 0.244 G 0.251 T 0.254 Background model order: 0 ******************************************************************************** ******************************************************************************** MOTIF CAAGATGG MEME-1 width = 8 sites = 55 llr = 512 E-value = 5.2e-047 ******************************************************************************** -------------------------------------------------------------------------------- Motif CAAGATGG MEME-1 Description -------------------------------------------------------------------------------- Simplified A 1aa1a::: pos.-specific C 9::1:::: probability G :::8:1aa matrix T 1::::9:: bits 2.0 * 1.8 ** ** 1.6 ** **** 1.4 *** **** Relative 1.2 ******** Entropy 1.0 ******** (13.4 bits) 0.8 ******** 0.6 ******** 0.4 ******** 0.2 ******** 0.0 -------- Multilevel CAAGATGG consensus sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CAAGATGG MEME-1 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr3:99495993-99496073 21 1.57e-05 agcccctatt caagatgg agttgctctg chr8:20134642-20134722 15 1.57e-05 ctaccaaaac caagatgg tgatgagagt chr5:90587914-90587994 64 1.57e-05 agcccctatt caagatgg agttgctat chr4:74962377-74962457 29 1.57e-05 agcccctatt caagatgg agttgctctg chr9:132913304-132913384 1 1.57e-05 . caagatgg cgttgctctg chr3:39363607-39363687 5 1.57e-05 aaac caagatgg agtcggtggg chr3:44482949-44483029 36 1.57e-05 gttccctatt caagatgg agtcactctg chr1:181143221-181143301 53 1.57e-05 ttgccagaac caagatgg tgacaaaagt chr2:172435101-172435181 17 1.57e-05 agcccctatt caagatgg agtcgctctg chr3:37866004-37866084 64 1.57e-05 agcccctatt caagatgg agttgctct chr6:147770879-147770959 38 1.57e-05 agcccccatt caagatgg agacattctg chr17:46903266-46903346 38 1.57e-05 ggcccctatt caagatgg agtcactctg chr14:103000329-10300040 16 1.57e-05 agcccctgct caagatgg agttgctctg chr12:131847296-13184737 28 1.57e-05 agtccttgtt caagatgg agtcactctg chr6:31364693-31364773 51 1.57e-05 cggttggaag caagatgg ggtcagttag chr9:101614431-101614511 13 1.57e-05 agcccctgtt caagatgg agttactgtg chr12:31887151-31887231 5 1.57e-05 gaag caagatgg agtcggttaa chr20:39577467-39577547 20 1.57e-05 agccgctatt caagatgg agttgctctg chr12:132090143-13209022 4 1.57e-05 gtt caagatgg agtcattctg chr16:77773537-77773617 44 1.57e-05 agcccctatt caagatgg agttgctctg chr14:93042197-93042277 55 1.57e-05 aacccctatt caagatgg gggtcactct chr15:68193178-68193258 19 1.57e-05 aggcactatt caagatgg agttgctctg chr3:154794881-154794961 20 1.57e-05 ggcccctatt caagatgg agttgctctg chr15:29965589-29965669 4 1.57e-05 act caagatgg agtcgctgtg chr7:29659598-29659678 49 1.57e-05 agcccttatt caagatgg agttgctgtg chr9:110438232-110438312 15 1.57e-05 agcccctatt caagatgg agtcactctg chr17:47154388-47154468 28 1.57e-05 agcacttatt caagatgg agtcgctctg chr7:123633161-123633241 18 1.57e-05 cagccctatt caagatgg agtcactctg chrX:15901566-15901646 7 1.57e-05 cctatt caagatgg agttgctctg chr15:60314140-60314220 28 1.57e-05 agcccctact caagatgg tgtcgctcca chr1:9138448-9138528 29 1.57e-05 ggtccctatt caagatgg agtcgctctg chr2:11262744-11262824 11 1.57e-05 agctcctacg caagatgg agttgctctg chr16:58467641-58467721 45 3.14e-05 gggatgcatc caaaatgg agttgctctt chr11:63302443-63302523 12 3.14e-05 CTAAATATTT CAAAATGG AGTCACTTAC chr12:31771228-31771308 29 3.14e-05 aaccaaaaat caaaatgg agtcacccat chr1:89636360-89636440 27 3.14e-05 caaaccctaa caaaatgg agtcaggagt chr17:41430093-41430173 28 3.14e-05 agccctccct caaaatgg agtcgctttg chr7:84451405-84451485 31 4.67e-05 agcctctata caacatgg agtcactctg chr6:37941218-37941298 64 4.67e-05 ctgtgctatc caacatgg tagctacat chr22:22378240-22378320 25 4.67e-05 agcccctatt caacatgg agtcactctg chr4:79615513-79615593 19 9.47e-05 aggttaaagg taagatgg agttggttag chr3:39363931-39364011 53 9.47e-05 ataattttgc aaagatgg tttcaagtcc chr2:205219397-205219477 34 9.47e-05 agtctttttc taagatgg agttacttat chr12:122818299-12281837 14 9.47e-05 agctcagatg aaagatgg ccgttggctt chr1:247531189-247531269 37 9.47e-05 tatatttgaa caagaggg actccatctt chr3:39326249-39326329 69 9.47e-05 CAGGGAACAG CAAGAGGG GAGC chr4:154458952-154459032 3 9.47e-05 tt taagatgg agttgctctg chr21:38939264-38939344 62 1.88e-04 aaggataggc caaggtgg gatgtttaca chr3:186619115-186619195 17 1.88e-04 agtctgagat caagatgt tggcagggtg chr1:18748635-18748715 28 1.88e-04 gcctgttgtt caagctgg cccagtcagg chr1:94480716-94480796 45 1.88e-04 aaactgaggc cgagatgg atgaattact chr20:3646633-3646713 16 1.88e-04 agcccctatt caggatgg agttgctctg chr5:43773361-43773441 31 1.88e-04 ACCGAGGAGG CAAGATGC ACAAGAGGCT chr20:34671542-34671622 13 2.36e-04 aaataaccat aaaaatgg gcaacaagca chr2:70141854-70141934 72 2.36e-04 ACTAACAAAG CAAAAGGG G -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CAAGATGG MEME-1 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr3:99495993-99496073 1.6e-05 20_[+1]_52 chr8:20134642-20134722 1.6e-05 14_[+1]_58 chr5:90587914-90587994 1.6e-05 63_[+1]_9 chr4:74962377-74962457 1.6e-05 28_[+1]_44 chr9:132913304-132913384 1.6e-05 [+1]_72 chr3:39363607-39363687 1.6e-05 4_[+1]_68 chr3:44482949-44483029 1.6e-05 35_[+1]_37 chr1:181143221-181143301 1.6e-05 52_[+1]_20 chr2:172435101-172435181 1.6e-05 16_[+1]_56 chr3:37866004-37866084 1.6e-05 63_[+1]_9 chr6:147770879-147770959 1.6e-05 37_[+1]_35 chr17:46903266-46903346 1.6e-05 37_[+1]_35 chr14:103000329-10300040 1.6e-05 15_[+1]_57 chr12:131847296-13184737 1.6e-05 27_[+1]_45 chr6:31364693-31364773 1.6e-05 50_[+1]_22 chr9:101614431-101614511 1.6e-05 12_[+1]_60 chr12:31887151-31887231 1.6e-05 4_[+1]_68 chr20:39577467-39577547 1.6e-05 19_[+1]_53 chr12:132090143-13209022 1.6e-05 3_[+1]_69 chr16:77773537-77773617 1.6e-05 43_[+1]_29 chr14:93042197-93042277 1.6e-05 54_[+1]_18 chr15:68193178-68193258 1.6e-05 18_[+1]_54 chr3:154794881-154794961 1.6e-05 19_[+1]_53 chr15:29965589-29965669 1.6e-05 3_[+1]_69 chr7:29659598-29659678 1.6e-05 48_[+1]_24 chr9:110438232-110438312 1.6e-05 14_[+1]_58 chr17:47154388-47154468 1.6e-05 27_[+1]_45 chr7:123633161-123633241 1.6e-05 17_[+1]_55 chrX:15901566-15901646 1.6e-05 6_[+1]_66 chr15:60314140-60314220 1.6e-05 27_[+1]_45 chr1:9138448-9138528 1.6e-05 28_[+1]_44 chr2:11262744-11262824 1.6e-05 10_[+1]_62 chr16:58467641-58467721 3.1e-05 44_[+1]_28 chr11:63302443-63302523 3.1e-05 11_[+1]_61 chr12:31771228-31771308 3.1e-05 28_[+1]_44 chr1:89636360-89636440 3.1e-05 26_[+1]_46 chr17:41430093-41430173 3.1e-05 27_[+1]_45 chr7:84451405-84451485 4.7e-05 30_[+1]_42 chr6:37941218-37941298 4.7e-05 63_[+1]_9 chr22:22378240-22378320 4.7e-05 24_[+1]_48 chr4:79615513-79615593 9.5e-05 18_[+1]_54 chr3:39363931-39364011 9.5e-05 52_[+1]_20 chr2:205219397-205219477 9.5e-05 33_[+1]_39 chr12:122818299-12281837 9.5e-05 13_[+1]_59 chr1:247531189-247531269 9.5e-05 36_[+1]_36 chr3:39326249-39326329 9.5e-05 68_[+1]_4 chr4:154458952-154459032 9.5e-05 2_[+1]_70 chr21:38939264-38939344 0.00019 61_[+1]_11 chr3:186619115-186619195 0.00019 16_[+1]_56 chr1:18748635-18748715 0.00019 27_[+1]_45 chr1:94480716-94480796 0.00019 44_[+1]_28 chr20:3646633-3646713 0.00019 15_[+1]_57 chr5:43773361-43773441 0.00019 30_[+1]_42 chr20:34671542-34671622 0.00024 12_[+1]_60 chr2:70141854-70141934 0.00024 71_[+1]_1 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CAAGATGG MEME-1 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF CAAGATGG width=8 seqs=55 chr3:99495993-99496073 ( 21) CAAGATGG 1 chr8:20134642-20134722 ( 15) CAAGATGG 1 chr5:90587914-90587994 ( 64) CAAGATGG 1 chr4:74962377-74962457 ( 29) CAAGATGG 1 chr9:132913304-132913384 ( 1) CAAGATGG 1 chr3:39363607-39363687 ( 5) CAAGATGG 1 chr3:44482949-44483029 ( 36) CAAGATGG 1 chr1:181143221-181143301 ( 53) CAAGATGG 1 chr2:172435101-172435181 ( 17) CAAGATGG 1 chr3:37866004-37866084 ( 64) CAAGATGG 1 chr6:147770879-147770959 ( 38) CAAGATGG 1 chr17:46903266-46903346 ( 38) CAAGATGG 1 chr14:103000329-10300040 ( 16) CAAGATGG 1 chr12:131847296-13184737 ( 28) CAAGATGG 1 chr6:31364693-31364773 ( 51) CAAGATGG 1 chr9:101614431-101614511 ( 13) CAAGATGG 1 chr12:31887151-31887231 ( 5) CAAGATGG 1 chr20:39577467-39577547 ( 20) CAAGATGG 1 chr12:132090143-13209022 ( 4) CAAGATGG 1 chr16:77773537-77773617 ( 44) CAAGATGG 1 chr14:93042197-93042277 ( 55) CAAGATGG 1 chr15:68193178-68193258 ( 19) CAAGATGG 1 chr3:154794881-154794961 ( 20) CAAGATGG 1 chr15:29965589-29965669 ( 4) CAAGATGG 1 chr7:29659598-29659678 ( 49) CAAGATGG 1 chr9:110438232-110438312 ( 15) CAAGATGG 1 chr17:47154388-47154468 ( 28) CAAGATGG 1 chr7:123633161-123633241 ( 18) CAAGATGG 1 chrX:15901566-15901646 ( 7) CAAGATGG 1 chr15:60314140-60314220 ( 28) CAAGATGG 1 chr1:9138448-9138528 ( 29) CAAGATGG 1 chr2:11262744-11262824 ( 11) CAAGATGG 1 chr16:58467641-58467721 ( 45) CAAAATGG 1 chr11:63302443-63302523 ( 12) CAAAATGG 1 chr12:31771228-31771308 ( 29) CAAAATGG 1 chr1:89636360-89636440 ( 27) CAAAATGG 1 chr17:41430093-41430173 ( 28) CAAAATGG 1 chr7:84451405-84451485 ( 31) CAACATGG 1 chr6:37941218-37941298 ( 64) CAACATGG 1 chr22:22378240-22378320 ( 25) CAACATGG 1 chr4:79615513-79615593 ( 19) TAAGATGG 1 chr3:39363931-39364011 ( 53) AAAGATGG 1 chr2:205219397-205219477 ( 34) TAAGATGG 1 chr12:122818299-12281837 ( 14) AAAGATGG 1 chr1:247531189-247531269 ( 37) CAAGAGGG 1 chr3:39326249-39326329 ( 69) CAAGAGGG 1 chr4:154458952-154459032 ( 3) TAAGATGG 1 chr21:38939264-38939344 ( 62) CAAGGTGG 1 chr3:186619115-186619195 ( 17) CAAGATGT 1 chr1:18748635-18748715 ( 28) CAAGCTGG 1 chr1:94480716-94480796 ( 45) CGAGATGG 1 chr20:3646633-3646713 ( 16) CAGGATGG 1 chr5:43773361-43773441 ( 31) CAAGATGC 1 chr20:34671542-34671622 ( 13) AAAAATGG 1 chr2:70141854-70141934 ( 72) CAAAAGGG 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CAAGATGG MEME-1 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 18250 bayes= 8.95894 E= 5.2e-047 -221 187 -1243 -222 196 -1243 -378 -1243 196 -1243 -378 -1243 -99 -216 171 -1243 193 -374 -378 -1243 -1243 -1243 -220 190 -1243 -1243 200 -1243 -1243 -374 194 -380 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CAAGATGG MEME-1 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 55 E= 5.2e-047 0.054545 0.890909 0.000000 0.054545 0.981818 0.000000 0.018182 0.000000 0.981818 0.000000 0.018182 0.000000 0.127273 0.054545 0.818182 0.000000 0.963636 0.018182 0.018182 0.000000 0.000000 0.000000 0.054545 0.945455 0.000000 0.000000 1.000000 0.000000 0.000000 0.018182 0.963636 0.018182 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CAAGATGG MEME-1 regular expression -------------------------------------------------------------------------------- CAAGATGG -------------------------------------------------------------------------------- Time 4.97 secs. ******************************************************************************** ******************************************************************************** MOTIF AGTNACTC MEME-2 width = 8 sites = 61 llr = 510 E-value = 1.5e-031 ******************************************************************************** -------------------------------------------------------------------------------- Motif AGTNACTC MEME-2 Description -------------------------------------------------------------------------------- Simplified A a::37::: pos.-specific C ::32:a:a probability G :a:33::: matrix T ::73::a: bits 2.0 * *** 1.8 ** *** 1.6 ** *** 1.4 ** *** Relative 1.2 ** *** Entropy 1.0 *** **** (12.1 bits) 0.8 *** **** 0.6 *** **** 0.4 *** **** 0.2 *** **** 0.0 -------- Multilevel AGTAACTC consensus CGG sequence T -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AGTNACTC MEME-2 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr3:45102725-45102805 73 3.08e-05 tttgaaccag agtgactc chr8:98774866-98774946 22 3.08e-05 ttggaaccac agtgactc catcttgaat chr12:33099606-33099686 14 3.08e-05 tttgaaccag agtgactc catattgaat chr1:212651640-212651720 38 3.08e-05 acttagcacg agtgactc cattttggct chr2:128685152-128685232 21 3.08e-05 ctttagcatg agtgactc cattttggtt chr12:96476887-96476967 48 3.08e-05 tttgaaccag agtaactc catcttgaat chr11:63302443-63302523 34 3.08e-05 ACTTACGACA AGTGACTC AGCCCACAGT chr11:100885499-10088557 2 3.08e-05 g agtgactc catcttgaat chrX:67682130-67682210 42 3.08e-05 ctcgaaccag agtgactc catctttaat chr1:18748635-18748715 60 3.08e-05 tttgaacaag agtgactc catcttgaat chr4:57566987-57567067 61 3.08e-05 ttctaaccaa agtgactc catctttaat chr10:125701742-12570182 28 3.08e-05 tctgaaccac agtgactc catcttgaac chr21:30164076-30164156 22 3.08e-05 AAATTaccag agtgactc catcttgaat chr3:125919551-125919631 21 3.08e-05 atttagcatg agtgactc catattggct chr11:97844198-97844278 54 4.63e-05 tcttagcctg agttactc catgttgttt chr7:84451405-84451485 39 6.13e-05 tacaacatgg agtcactc tggttaaaac chr3:44482949-44483029 44 6.13e-05 ttcaagatgg agtcactc tggttcaaac chr17:46903266-46903346 46 6.13e-05 ttcaagatgg agtcactc tggttcaaac chr12:131847296-13184737 36 6.13e-05 ttcaagatgg agtcactc tggttcaaac chr8:94886447-94886527 2 6.13e-05 g agtcactc tagttcagat chr9:110438232-110438312 23 6.13e-05 ttcaagatgg agtcactc tggttcaaac chr7:123633161-123633241 26 6.13e-05 ttcaagatgg agtcactc tggttccaat chr22:22378240-22378320 33 6.13e-05 ttcaacatgg agtcactc tggttctaac chr19:52290328-52290408 65 1.22e-04 ctggaaccag agcaactc catgttga chr16:50491937-50492017 60 1.22e-04 ttcgaaccag agcgactc catcttgaat chr14:64830109-64830189 55 1.22e-04 ttagaaccag agcaactc catcttgaat chr9:139098860-139098940 52 1.22e-04 TGAAACCAGA AGCAACTC TCGAGTGAGA chr12:127437991-12743807 36 1.22e-04 cttgaaccag agcaactc catcttgaat chr6:164758824-164758904 43 1.22e-04 tttgaaccag agcgactc catcttgaat chrX:3619582-3619662 57 1.22e-04 tctgaaccag agcaactc catcttgaag chr16:12704977-12705057 49 1.22e-04 tttgaaccag agcaactc catcttgggt chr3:32090158-32090238 45 1.22e-04 tttgaaccag agcaactc cattttgaat chr8:90809074-90809154 45 1.22e-04 tttgaaccag agcaactc cattttgaat chr17:77007704-77007784 13 1.22e-04 TGAGAGATCC AGTGGCTC TCtcagaggc chr2:152899177-152899257 71 1.22e-04 tttgaaccag agcaactc ca chr1:223079699-223079779 31 1.22e-04 tttgaaccag agcaactc catcttaaat chr10:15669699-15669779 72 1.22e-04 tttgaaccag agcaactc c chr8:29474742-29474822 35 1.22e-04 ttcgaaccag agcaactc catcttgaat chr8:20134432-20134512 42 1.22e-04 tttgaaccag agcaactc catgttgaat chr12:65955734-65955814 67 1.22e-04 tttgaaccag agcgactc catctt chr3:99495993-99496073 29 1.52e-04 ttcaagatgg agttgctc tggtttgaat chr5:5586006-5586086 47 1.52e-04 attgaaccag agctactc catgcagagc chr4:74962377-74962457 37 1.52e-04 ttcaagatgg agttgctc tggttaaaac chr16:58467641-58467721 53 1.52e-04 tccaaaatgg agttgctc ttgtctctac chr14:103000329-10300040 24 1.52e-04 ctcaagatgg agttgctc tggttcacac chr20:39577467-39577547 28 1.52e-04 ttcaagatgg agttgctc tggttcaaat chr12:127388139-12738821 3 1.52e-04 gg agttgctc aggttcaaat chr4:154458952-154459032 11 1.52e-04 tttaagatgg agttgctc tggttcaaaa chr20:46768484-46768564 4 1.52e-04 tgg agttgctc tggttcaagt chr15:68193178-68193258 27 1.52e-04 ttcaagatgg agttgctc tggttccagt chr3:154794881-154794961 28 1.52e-04 ttcaagatgg agttgctc tggtccaaat chrX:15901566-15901646 15 1.52e-04 ttcaagatgg agttgctc tggtttgatt chr1:221896523-221896603 71 1.52e-04 GGTCAAAAGC AGTTGCTC AA chr20:3646633-3646713 24 1.52e-04 ttcaggatgg agttgctc tggttcacag chr2:11262744-11262824 19 1.52e-04 cgcaagatgg agttgctc tggtttacat chr2:172435101-172435181 25 1.81e-04 ttcaagatgg agtcgctc tggttcaaac chr17:47154388-47154468 36 1.81e-04 ttcaagatgg agtcgctc tggttcaaac chr1:9138448-9138528 37 1.81e-04 ttcaagatgg agtcgctc tggttccaat chr5:90587914-90587994 29 2.11e-04 aatgcagccc agcagctc tcagccttat chr12:109611695-10961177 3 2.71e-04 gt tgtaactc aCAACAGGTT chr1:119506153-119506233 28 2.71e-04 AAGGCCCCAG TGTAACTC TCTTCCCTAG -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AGTNACTC MEME-2 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr3:45102725-45102805 3.1e-05 72_[+2] chr8:98774866-98774946 3.1e-05 21_[+2]_51 chr12:33099606-33099686 3.1e-05 13_[+2]_59 chr1:212651640-212651720 3.1e-05 37_[+2]_35 chr2:128685152-128685232 3.1e-05 20_[+2]_52 chr12:96476887-96476967 3.1e-05 47_[+2]_25 chr11:63302443-63302523 3.1e-05 33_[+2]_39 chr11:100885499-10088557 3.1e-05 1_[+2]_71 chrX:67682130-67682210 3.1e-05 41_[+2]_31 chr1:18748635-18748715 3.1e-05 59_[+2]_13 chr4:57566987-57567067 3.1e-05 60_[+2]_12 chr10:125701742-12570182 3.1e-05 27_[+2]_45 chr21:30164076-30164156 3.1e-05 21_[+2]_51 chr3:125919551-125919631 3.1e-05 20_[+2]_52 chr11:97844198-97844278 4.6e-05 53_[+2]_19 chr7:84451405-84451485 6.1e-05 38_[+2]_34 chr3:44482949-44483029 6.1e-05 43_[+2]_29 chr17:46903266-46903346 6.1e-05 45_[+2]_27 chr12:131847296-13184737 6.1e-05 35_[+2]_37 chr8:94886447-94886527 6.1e-05 1_[+2]_71 chr9:110438232-110438312 6.1e-05 22_[+2]_50 chr7:123633161-123633241 6.1e-05 25_[+2]_47 chr22:22378240-22378320 6.1e-05 32_[+2]_40 chr19:52290328-52290408 0.00012 64_[+2]_8 chr16:50491937-50492017 0.00012 59_[+2]_13 chr14:64830109-64830189 0.00012 54_[+2]_18 chr9:139098860-139098940 0.00012 51_[+2]_21 chr12:127437991-12743807 0.00012 35_[+2]_37 chr6:164758824-164758904 0.00012 42_[+2]_30 chrX:3619582-3619662 0.00012 56_[+2]_16 chr16:12704977-12705057 0.00012 48_[+2]_24 chr3:32090158-32090238 0.00012 44_[+2]_28 chr8:90809074-90809154 0.00012 44_[+2]_28 chr17:77007704-77007784 0.00012 12_[+2]_60 chr2:152899177-152899257 0.00012 70_[+2]_2 chr1:223079699-223079779 0.00012 30_[+2]_42 chr10:15669699-15669779 0.00012 71_[+2]_1 chr8:29474742-29474822 0.00012 34_[+2]_38 chr8:20134432-20134512 0.00012 41_[+2]_31 chr12:65955734-65955814 0.00012 66_[+2]_6 chr3:99495993-99496073 0.00015 28_[+2]_44 chr5:5586006-5586086 0.00015 46_[+2]_26 chr4:74962377-74962457 0.00015 36_[+2]_36 chr16:58467641-58467721 0.00015 52_[+2]_20 chr14:103000329-10300040 0.00015 23_[+2]_49 chr20:39577467-39577547 0.00015 27_[+2]_45 chr12:127388139-12738821 0.00015 2_[+2]_70 chr4:154458952-154459032 0.00015 10_[+2]_62 chr20:46768484-46768564 0.00015 3_[+2]_69 chr15:68193178-68193258 0.00015 26_[+2]_46 chr3:154794881-154794961 0.00015 27_[+2]_45 chrX:15901566-15901646 0.00015 14_[+2]_58 chr1:221896523-221896603 0.00015 70_[+2]_2 chr20:3646633-3646713 0.00015 23_[+2]_49 chr2:11262744-11262824 0.00015 18_[+2]_54 chr2:172435101-172435181 0.00018 24_[+2]_48 chr17:47154388-47154468 0.00018 35_[+2]_37 chr1:9138448-9138528 0.00018 36_[+2]_36 chr5:90587914-90587994 0.00021 28_[+2]_44 chr12:109611695-10961177 0.00027 2_[+2]_70 chr1:119506153-119506233 0.00027 27_[+2]_45 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AGTNACTC MEME-2 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF AGTNACTC width=8 seqs=61 chr3:45102725-45102805 ( 73) AGTGACTC 1 chr8:98774866-98774946 ( 22) AGTGACTC 1 chr12:33099606-33099686 ( 14) AGTGACTC 1 chr1:212651640-212651720 ( 38) AGTGACTC 1 chr2:128685152-128685232 ( 21) AGTGACTC 1 chr12:96476887-96476967 ( 48) AGTAACTC 1 chr11:63302443-63302523 ( 34) AGTGACTC 1 chr11:100885499-10088557 ( 2) AGTGACTC 1 chrX:67682130-67682210 ( 42) AGTGACTC 1 chr1:18748635-18748715 ( 60) AGTGACTC 1 chr4:57566987-57567067 ( 61) AGTGACTC 1 chr10:125701742-12570182 ( 28) AGTGACTC 1 chr21:30164076-30164156 ( 22) AGTGACTC 1 chr3:125919551-125919631 ( 21) AGTGACTC 1 chr11:97844198-97844278 ( 54) AGTTACTC 1 chr7:84451405-84451485 ( 39) AGTCACTC 1 chr3:44482949-44483029 ( 44) AGTCACTC 1 chr17:46903266-46903346 ( 46) AGTCACTC 1 chr12:131847296-13184737 ( 36) AGTCACTC 1 chr8:94886447-94886527 ( 2) AGTCACTC 1 chr9:110438232-110438312 ( 23) AGTCACTC 1 chr7:123633161-123633241 ( 26) AGTCACTC 1 chr22:22378240-22378320 ( 33) AGTCACTC 1 chr19:52290328-52290408 ( 65) AGCAACTC 1 chr16:50491937-50492017 ( 60) AGCGACTC 1 chr14:64830109-64830189 ( 55) AGCAACTC 1 chr9:139098860-139098940 ( 52) AGCAACTC 1 chr12:127437991-12743807 ( 36) AGCAACTC 1 chr6:164758824-164758904 ( 43) AGCGACTC 1 chrX:3619582-3619662 ( 57) AGCAACTC 1 chr16:12704977-12705057 ( 49) AGCAACTC 1 chr3:32090158-32090238 ( 45) AGCAACTC 1 chr8:90809074-90809154 ( 45) AGCAACTC 1 chr17:77007704-77007784 ( 13) AGTGGCTC 1 chr2:152899177-152899257 ( 71) AGCAACTC 1 chr1:223079699-223079779 ( 31) AGCAACTC 1 chr10:15669699-15669779 ( 72) AGCAACTC 1 chr8:29474742-29474822 ( 35) AGCAACTC 1 chr8:20134432-20134512 ( 42) AGCAACTC 1 chr12:65955734-65955814 ( 67) AGCGACTC 1 chr3:99495993-99496073 ( 29) AGTTGCTC 1 chr5:5586006-5586086 ( 47) AGCTACTC 1 chr4:74962377-74962457 ( 37) AGTTGCTC 1 chr16:58467641-58467721 ( 53) AGTTGCTC 1 chr14:103000329-10300040 ( 24) AGTTGCTC 1 chr20:39577467-39577547 ( 28) AGTTGCTC 1 chr12:127388139-12738821 ( 3) AGTTGCTC 1 chr4:154458952-154459032 ( 11) AGTTGCTC 1 chr20:46768484-46768564 ( 4) AGTTGCTC 1 chr15:68193178-68193258 ( 27) AGTTGCTC 1 chr3:154794881-154794961 ( 28) AGTTGCTC 1 chrX:15901566-15901646 ( 15) AGTTGCTC 1 chr1:221896523-221896603 ( 71) AGTTGCTC 1 chr20:3646633-3646713 ( 24) AGTTGCTC 1 chr2:11262744-11262824 ( 19) AGTTGCTC 1 chr2:172435101-172435181 ( 25) AGTCGCTC 1 chr17:47154388-47154468 ( 36) AGTCGCTC 1 chr1:9138448-9138528 ( 37) AGTCGCTC 1 chr5:90587914-90587994 ( 29) AGCAGCTC 1 chr12:109611695-10961177 ( 3) TGTAACTC 1 chr1:119506153-119506233 ( 28) TGTAACTC 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AGTNACTC MEME-2 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 18250 bayes= 7.30606 E= 1.5e-031 194 -1257 -1257 -295 -1257 -1257 200 -1257 -1257 28 -1257 147 14 -43 15 5 145 -1257 31 -1257 -1257 204 -1257 -1257 -1257 -1257 -1257 198 -1257 204 -1257 -1257 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AGTNACTC MEME-2 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 61 E= 1.5e-031 0.967213 0.000000 0.000000 0.032787 0.000000 0.000000 1.000000 0.000000 0.000000 0.295082 0.000000 0.704918 0.278689 0.180328 0.278689 0.262295 0.688525 0.000000 0.311475 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AGTNACTC MEME-2 regular expression -------------------------------------------------------------------------------- AG[TC][AGT][AG]CTC -------------------------------------------------------------------------------- Time 8.65 secs. ******************************************************************************** ******************************************************************************** MOTIF CATCTTGA MEME-3 width = 8 sites = 39 llr = 352 E-value = 6.3e-018 ******************************************************************************** -------------------------------------------------------------------------------- Motif CATCTTGA MEME-3 Description -------------------------------------------------------------------------------- Simplified A :a::1:19 pos.-specific C a::8:::1 probability G ::11::91 matrix T ::919a1: bits 2.0 ** 1.8 ** * 1.6 *** ** 1.4 *** *** Relative 1.2 *** **** Entropy 1.0 ******** (13.0 bits) 0.8 ******** 0.6 ******** 0.4 ******** 0.2 ******** 0.0 -------- Multilevel CATCTTGA consensus sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CATCTTGA MEME-3 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr8:98774866-98774946 30 1.56e-05 acagtgactc catcttga ataggggcta chr15:57075509-57075589 55 1.56e-05 agagcgccac catcttga gcaggggctg chr16:50491937-50492017 68 1.56e-05 agagcgactc catcttga ataga chr12:96476887-96476967 56 1.56e-05 agagtaactc catcttga ataggggctg chr14:64830109-64830189 63 1.56e-05 agagcaactc catcttga ataggggctg chr12:127437991-12743807 44 1.56e-05 agagcaactc catcttga ataagggctt chr6:164758824-164758904 51 1.56e-05 agagcgactc catcttga ataggggctg chr11:100885499-10088557 10 1.56e-05 gagtgactc catcttga ataggggctg chr16:17684952-17685032 46 1.56e-05 agagtgaccc catcttga ataagggctg chrX:3619582-3619662 65 1.56e-05 agagcaactc catcttga agaggagc chr9:88798424-88798504 61 1.56e-05 agagagactc catcttga ataggagctg chr1:247531189-247531269 49 1.56e-05 agagggactc catcttga agatgggctg chr17:77007704-77007784 50 1.56e-05 agagcaacac catcttga ataagggctg chr5:102393008-102393088 40 1.56e-05 agagctacac catcttga atgggggctg chr1:18748635-18748715 68 1.56e-05 agagtgactc catcttga ataca chr6:14077530-14077610 62 1.56e-05 ggagagactc catcttga atagggctgg chr10:125701742-12570182 36 1.56e-05 acagtgactc catcttga acagggactg chr21:30164076-30164156 30 1.56e-05 agagtgactc catcttga ataggggacg chr8:29474742-29474822 43 1.56e-05 agagcaactc catcttga atagggactg chr19:52290328-52290408 73 4.77e-05 agagcaactc catgttga chr3:32090158-32090238 53 4.77e-05 agagcaactc cattttga ataggggctg chr8:90809074-90809154 53 4.77e-05 agagcaactc cattttga ataggggctg chr11:20000320-20000400 46 4.77e-05 TTATGCAGGC CATGTTGA ACTGTGAACT chr2:65893404-65893484 24 4.77e-05 gtgggagcag catgttga ggaggttggg chr8:20134432-20134512 50 4.77e-05 agagcaactc catgttga ataggggctg chr16:12704977-12705057 57 6.32e-05 agagcaactc catcttgg gtaggagctg chr6:18242834-18242914 38 6.32e-05 cactagcagc catcttgg ttatcctatc chr15:41769728-41769808 49 7.83e-05 ATCTTTTCTA CATCTTGC CTAAGTTTAT chr13:61158205-61158285 37 7.83e-05 tcactgactc catcttgc ttctaacctt chr10:3933010-3933090 41 1.40e-04 agggcgactc catcttaa atagagagtg chr1:116417341-116417421 14 1.40e-04 gcacctctga catcatga ctggttggag chrX:67682130-67682210 50 1.40e-04 agagtgactc catcttta ataggtgctg chr8:28982989-28983069 22 1.40e-04 tgattaatgt cagcttga aaaaagtctc chr4:57566987-57567067 69 1.40e-04 aaagtgactc catcttta atag chr1:223079699-223079779 39 1.40e-04 agagcaactc catcttaa ataggggctg chr1:158985289-158985369 28 1.40e-04 TAGCAGTCTC CATCATGA AAACATTAGT chr5:169514576-169514656 63 1.56e-04 ggtcacactt catctgga ctgggttgcc chr2:128685152-128685232 29 1.88e-04 tgagtgactc cattttgg tttggtctac chr12:31887151-31887231 70 3.48e-04 aaggcggttt cagtttga taa -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CATCTTGA MEME-3 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr8:98774866-98774946 1.6e-05 29_[+3]_43 chr15:57075509-57075589 1.6e-05 54_[+3]_18 chr16:50491937-50492017 1.6e-05 67_[+3]_5 chr12:96476887-96476967 1.6e-05 55_[+3]_17 chr14:64830109-64830189 1.6e-05 62_[+3]_10 chr12:127437991-12743807 1.6e-05 43_[+3]_29 chr6:164758824-164758904 1.6e-05 50_[+3]_22 chr11:100885499-10088557 1.6e-05 9_[+3]_63 chr16:17684952-17685032 1.6e-05 45_[+3]_27 chrX:3619582-3619662 1.6e-05 64_[+3]_8 chr9:88798424-88798504 1.6e-05 60_[+3]_12 chr1:247531189-247531269 1.6e-05 48_[+3]_24 chr17:77007704-77007784 1.6e-05 49_[+3]_23 chr5:102393008-102393088 1.6e-05 39_[+3]_33 chr1:18748635-18748715 1.6e-05 67_[+3]_5 chr6:14077530-14077610 1.6e-05 61_[+3]_11 chr10:125701742-12570182 1.6e-05 35_[+3]_37 chr21:30164076-30164156 1.6e-05 29_[+3]_43 chr8:29474742-29474822 1.6e-05 42_[+3]_30 chr19:52290328-52290408 4.8e-05 72_[+3] chr3:32090158-32090238 4.8e-05 52_[+3]_20 chr8:90809074-90809154 4.8e-05 52_[+3]_20 chr11:20000320-20000400 4.8e-05 45_[+3]_27 chr2:65893404-65893484 4.8e-05 23_[+3]_49 chr8:20134432-20134512 4.8e-05 49_[+3]_23 chr16:12704977-12705057 6.3e-05 56_[+3]_16 chr6:18242834-18242914 6.3e-05 37_[+3]_35 chr15:41769728-41769808 7.8e-05 48_[+3]_24 chr13:61158205-61158285 7.8e-05 36_[+3]_36 chr10:3933010-3933090 0.00014 40_[+3]_32 chr1:116417341-116417421 0.00014 13_[+3]_59 chrX:67682130-67682210 0.00014 49_[+3]_23 chr8:28982989-28983069 0.00014 21_[+3]_51 chr4:57566987-57567067 0.00014 68_[+3]_4 chr1:223079699-223079779 0.00014 38_[+3]_34 chr1:158985289-158985369 0.00014 27_[+3]_45 chr5:169514576-169514656 0.00016 62_[+3]_10 chr2:128685152-128685232 0.00019 28_[+3]_44 chr12:31887151-31887231 0.00035 69_[+3]_3 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CATCTTGA MEME-3 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF CATCTTGA width=8 seqs=39 chr8:98774866-98774946 ( 30) CATCTTGA 1 chr15:57075509-57075589 ( 55) CATCTTGA 1 chr16:50491937-50492017 ( 68) CATCTTGA 1 chr12:96476887-96476967 ( 56) CATCTTGA 1 chr14:64830109-64830189 ( 63) CATCTTGA 1 chr12:127437991-12743807 ( 44) CATCTTGA 1 chr6:164758824-164758904 ( 51) CATCTTGA 1 chr11:100885499-10088557 ( 10) CATCTTGA 1 chr16:17684952-17685032 ( 46) CATCTTGA 1 chrX:3619582-3619662 ( 65) CATCTTGA 1 chr9:88798424-88798504 ( 61) CATCTTGA 1 chr1:247531189-247531269 ( 49) CATCTTGA 1 chr17:77007704-77007784 ( 50) CATCTTGA 1 chr5:102393008-102393088 ( 40) CATCTTGA 1 chr1:18748635-18748715 ( 68) CATCTTGA 1 chr6:14077530-14077610 ( 62) CATCTTGA 1 chr10:125701742-12570182 ( 36) CATCTTGA 1 chr21:30164076-30164156 ( 30) CATCTTGA 1 chr8:29474742-29474822 ( 43) CATCTTGA 1 chr19:52290328-52290408 ( 73) CATGTTGA 1 chr3:32090158-32090238 ( 53) CATTTTGA 1 chr8:90809074-90809154 ( 53) CATTTTGA 1 chr11:20000320-20000400 ( 46) CATGTTGA 1 chr2:65893404-65893484 ( 24) CATGTTGA 1 chr8:20134432-20134512 ( 50) CATGTTGA 1 chr16:12704977-12705057 ( 57) CATCTTGG 1 chr6:18242834-18242914 ( 38) CATCTTGG 1 chr15:41769728-41769808 ( 49) CATCTTGC 1 chr13:61158205-61158285 ( 37) CATCTTGC 1 chr10:3933010-3933090 ( 41) CATCTTAA 1 chr1:116417341-116417421 ( 14) CATCATGA 1 chrX:67682130-67682210 ( 50) CATCTTTA 1 chr8:28982989-28983069 ( 22) CAGCTTGA 1 chr4:57566987-57567067 ( 69) CATCTTTA 1 chr1:223079699-223079779 ( 39) CATCTTAA 1 chr1:158985289-158985369 ( 28) CATCATGA 1 chr5:169514576-169514656 ( 63) CATCTGGA 1 chr2:128685152-128685232 ( 29) CATTTTGG 1 chr12:31887151-31887231 ( 70) CAGTTTGA 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CATCTTGA MEME-3 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 18250 bayes= 8.26829 E= 6.3e-018 -1193 204 -1193 -1193 199 -1193 -1193 -1193 -1193 -1193 -229 190 -1193 171 -129 -131 -230 -1193 -1193 190 -1193 -1193 -329 194 -230 -1193 184 -231 179 -225 -170 -1193 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CATCTTGA MEME-3 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 39 E= 6.3e-018 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.051282 0.948718 0.000000 0.794872 0.102564 0.102564 0.051282 0.000000 0.000000 0.948718 0.000000 0.000000 0.025641 0.974359 0.051282 0.000000 0.897436 0.051282 0.871795 0.051282 0.076923 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CATCTTGA MEME-3 regular expression -------------------------------------------------------------------------------- CATCTTGA -------------------------------------------------------------------------------- Time 12.27 secs. ******************************************************************************** ******************************************************************************** MOTIF TGAACCAG MEME-4 width = 8 sites = 43 llr = 375 E-value = 1.3e-017 ******************************************************************************** -------------------------------------------------------------------------------- Motif TGAACCAG MEME-4 Description -------------------------------------------------------------------------------- Simplified A 1:a7:1a: pos.-specific C 1::3a9:: probability G 18:::::a matrix T 82:::::: bits 2.0 * * 1.8 * * ** 1.6 * **** 1.4 * **** Relative 1.2 ******* Entropy 1.0 ******* (12.6 bits) 0.8 ******** 0.6 ******** 0.4 ******** 0.2 ******** 0.0 -------- Multilevel TGAACCAG consensus T C sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGAACCAG MEME-4 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr3:45102725-45102805 65 1.52e-05 cagaggcatt tgaaccag agtgactc chr5:5586006-5586086 39 1.52e-05 aatctttcat tgaaccag agctactcca chr15:57075509-57075589 39 1.52e-05 cagaagcatt tgaaccag agcgccacca chr12:33099606-33099686 6 1.52e-05 acatt tgaaccag agtgactcca chr12:96476887-96476967 40 1.52e-05 cagaggtgtt tgaaccag agtaactcca chr12:127437991-12743807 28 1.52e-05 cagaggcact tgaaccag agcaactcca chr6:164758824-164758904 35 1.52e-05 cagaggtatt tgaaccag agcgactcca chr16:17684952-17685032 30 1.52e-05 cagaggcatt tgaaccag agtgacccca chrX:3619582-3619662 49 1.52e-05 cagcggcatc tgaaccag agcaactcca chr16:12704977-12705057 41 1.52e-05 cagagggatt tgaaccag agcaactcca chr3:32090158-32090238 37 1.52e-05 cagaggtgtt tgaaccag agcaactcca chr8:90809074-90809154 37 1.52e-05 cagaggtgtt tgaaccag agcaactcca chr2:152899177-152899257 63 1.52e-05 cagacgcgtt tgaaccag agcaactcca chr1:223079699-223079779 23 1.52e-05 cagaggcgtt tgaaccag agcaactcca chr10:15669699-15669779 64 1.52e-05 cagaggcatt tgaaccag agcaactcc chr8:20134432-20134512 34 1.52e-05 cagaggcatt tgaaccag agcaactcca chr12:65955734-65955814 59 1.52e-05 cagaggcatt tgaaccag agcgactcca chr10:91115232-91115312 62 1.52e-05 tagagacatt tgaaccag agaaactcca chr16:50491937-50492017 52 6.01e-05 cagaggcatt cgaaccag agcgactcca chrX:67682130-67682210 34 6.01e-05 cagaggcact cgaaccag agtgactcca chr17:77007704-77007784 34 6.01e-05 cagaggcctt cgaaccag agcaacacca chr8:29474742-29474822 27 6.01e-05 cagagatgtt cgaaccag agcaactcca chr5:90587914-90587994 48 7.50e-05 cagccttatt ttacccag cccctattca chr7:84451405-84451485 15 7.50e-05 cagccttatt ttacccag cctctataca chr3:44482949-44483029 19 7.50e-05 cagccttatt ttacccag ttccctattc chr3:37866004-37866084 48 7.50e-05 cagccttatt ttacccag cccctattca chr6:147770879-147770959 22 7.50e-05 cagcctcatt ttacccag cccccattca chr16:77773537-77773617 28 7.50e-05 aagccttatc ttacccag cccctattca chr7:29659598-29659678 33 7.50e-05 agcatcattt ttacccag cccttattca chr17:47154388-47154468 12 7.50e-05 cagccttatt ttacccag cacttattca chr7:123633161-123633241 3 7.50e-05 tt ttacccag ccctattcaa chr15:60314140-60314220 12 7.50e-05 cagccttatt ttacccag cccctactca chr19:52290328-52290408 57 1.05e-04 cagaggcact ggaaccag agcaactcca chr3:101362781-101362861 66 1.05e-04 cagagctgtt agaaccag agtgact chr14:64830109-64830189 47 1.05e-04 cagaggcatt agaaccag agcaactcca chr1:181143020-181143100 66 1.05e-04 caaaggcgtt ggaaccag agtgact chr2:109883687-109883767 23 1.05e-04 GGCACACAAT GGAACCAG ACATAGCTTC chr1:18748635-18748715 52 1.21e-04 caggggcgtt tgaacaag agtgactcca chr20:33893571-33893651 8 1.21e-04 ATACAAG TGAACAAG AGAGTAACTG chr7:105987809-105987889 53 1.21e-04 tttcattatg tgaacaag tctctgcaag chr6:27968269-27968349 14 1.79e-04 gatgctggtg agacccAg taaggaacat chr10:125701742-12570182 20 2.40e-04 cagaggcatc tgaaccac agtgactcca chr15:29965589-29965669 73 2.72e-04 cctcttttgc tgaatcag -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGAACCAG MEME-4 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr3:45102725-45102805 1.5e-05 64_[+4]_8 chr5:5586006-5586086 1.5e-05 38_[+4]_34 chr15:57075509-57075589 1.5e-05 38_[+4]_34 chr12:33099606-33099686 1.5e-05 5_[+4]_67 chr12:96476887-96476967 1.5e-05 39_[+4]_33 chr12:127437991-12743807 1.5e-05 27_[+4]_45 chr6:164758824-164758904 1.5e-05 34_[+4]_38 chr16:17684952-17685032 1.5e-05 29_[+4]_43 chrX:3619582-3619662 1.5e-05 48_[+4]_24 chr16:12704977-12705057 1.5e-05 40_[+4]_32 chr3:32090158-32090238 1.5e-05 36_[+4]_36 chr8:90809074-90809154 1.5e-05 36_[+4]_36 chr2:152899177-152899257 1.5e-05 62_[+4]_10 chr1:223079699-223079779 1.5e-05 22_[+4]_50 chr10:15669699-15669779 1.5e-05 63_[+4]_9 chr8:20134432-20134512 1.5e-05 33_[+4]_39 chr12:65955734-65955814 1.5e-05 58_[+4]_14 chr10:91115232-91115312 1.5e-05 61_[+4]_11 chr16:50491937-50492017 6e-05 51_[+4]_21 chrX:67682130-67682210 6e-05 33_[+4]_39 chr17:77007704-77007784 6e-05 33_[+4]_39 chr8:29474742-29474822 6e-05 26_[+4]_46 chr5:90587914-90587994 7.5e-05 47_[+4]_25 chr7:84451405-84451485 7.5e-05 14_[+4]_58 chr3:44482949-44483029 7.5e-05 18_[+4]_54 chr3:37866004-37866084 7.5e-05 47_[+4]_25 chr6:147770879-147770959 7.5e-05 21_[+4]_51 chr16:77773537-77773617 7.5e-05 27_[+4]_45 chr7:29659598-29659678 7.5e-05 32_[+4]_40 chr17:47154388-47154468 7.5e-05 11_[+4]_61 chr7:123633161-123633241 7.5e-05 2_[+4]_70 chr15:60314140-60314220 7.5e-05 11_[+4]_61 chr19:52290328-52290408 0.00011 56_[+4]_16 chr3:101362781-101362861 0.00011 65_[+4]_7 chr14:64830109-64830189 0.00011 46_[+4]_26 chr1:181143020-181143100 0.00011 65_[+4]_7 chr2:109883687-109883767 0.00011 22_[+4]_50 chr1:18748635-18748715 0.00012 51_[+4]_21 chr20:33893571-33893651 0.00012 7_[+4]_65 chr7:105987809-105987889 0.00012 52_[+4]_20 chr6:27968269-27968349 0.00018 13_[+4]_59 chr10:125701742-12570182 0.00024 19_[+4]_53 chr15:29965589-29965669 0.00027 72_[+4] -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGAACCAG MEME-4 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF TGAACCAG width=8 seqs=43 chr3:45102725-45102805 ( 65) TGAACCAG 1 chr5:5586006-5586086 ( 39) TGAACCAG 1 chr15:57075509-57075589 ( 39) TGAACCAG 1 chr12:33099606-33099686 ( 6) TGAACCAG 1 chr12:96476887-96476967 ( 40) TGAACCAG 1 chr12:127437991-12743807 ( 28) TGAACCAG 1 chr6:164758824-164758904 ( 35) TGAACCAG 1 chr16:17684952-17685032 ( 30) TGAACCAG 1 chrX:3619582-3619662 ( 49) TGAACCAG 1 chr16:12704977-12705057 ( 41) TGAACCAG 1 chr3:32090158-32090238 ( 37) TGAACCAG 1 chr8:90809074-90809154 ( 37) TGAACCAG 1 chr2:152899177-152899257 ( 63) TGAACCAG 1 chr1:223079699-223079779 ( 23) TGAACCAG 1 chr10:15669699-15669779 ( 64) TGAACCAG 1 chr8:20134432-20134512 ( 34) TGAACCAG 1 chr12:65955734-65955814 ( 59) TGAACCAG 1 chr10:91115232-91115312 ( 62) TGAACCAG 1 chr16:50491937-50492017 ( 52) CGAACCAG 1 chrX:67682130-67682210 ( 34) CGAACCAG 1 chr17:77007704-77007784 ( 34) CGAACCAG 1 chr8:29474742-29474822 ( 27) CGAACCAG 1 chr5:90587914-90587994 ( 48) TTACCCAG 1 chr7:84451405-84451485 ( 15) TTACCCAG 1 chr3:44482949-44483029 ( 19) TTACCCAG 1 chr3:37866004-37866084 ( 48) TTACCCAG 1 chr6:147770879-147770959 ( 22) TTACCCAG 1 chr16:77773537-77773617 ( 28) TTACCCAG 1 chr7:29659598-29659678 ( 33) TTACCCAG 1 chr17:47154388-47154468 ( 12) TTACCCAG 1 chr7:123633161-123633241 ( 3) TTACCCAG 1 chr15:60314140-60314220 ( 12) TTACCCAG 1 chr19:52290328-52290408 ( 57) GGAACCAG 1 chr3:101362781-101362861 ( 66) AGAACCAG 1 chr14:64830109-64830189 ( 47) AGAACCAG 1 chr1:181143020-181143100 ( 66) GGAACCAG 1 chr2:109883687-109883767 ( 23) GGAACCAG 1 chr1:18748635-18748715 ( 52) TGAACAAG 1 chr20:33893571-33893651 ( 8) TGAACAAG 1 chr7:105987809-105987889 ( 53) TGAACAAG 1 chr6:27968269-27968349 ( 14) AGACCCAG 1 chr10:125701742-12570182 ( 20) TGAACCAC 1 chr15:29965589-29965669 ( 73) TGAATCAG 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGAACCAG MEME-4 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 18250 bayes= 8.2488 E= 1.3e-017 -185 -139 -184 160 -1207 -1207 161 -13 199 -1207 -1207 -1207 156 7 -1207 -1207 -1207 200 -1207 -344 -185 193 -1207 -1207 199 -1207 -1207 -1207 -1207 -339 196 -1207 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGAACCAG MEME-4 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 43 E= 1.3e-017 0.069767 0.093023 0.069767 0.767442 0.000000 0.000000 0.767442 0.232558 1.000000 0.000000 0.000000 0.000000 0.744186 0.255814 0.000000 0.000000 0.000000 0.976744 0.000000 0.023256 0.069767 0.930233 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.023256 0.976744 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGAACCAG MEME-4 regular expression -------------------------------------------------------------------------------- T[GT]A[AC]CCAG -------------------------------------------------------------------------------- Time 15.88 secs. ******************************************************************************** ******************************************************************************** MOTIF GGKTMAAA MEME-5 width = 8 sites = 55 llr = 461 E-value = 7.2e-024 ******************************************************************************** -------------------------------------------------------------------------------- Motif GGKTMAAA MEME-5 Description -------------------------------------------------------------------------------- Simplified A ::::4999 pos.-specific C ::::611: probability G 9a4::::1 matrix T 1:6a:::: bits 2.0 * * 1.8 * * 1.6 * * *** 1.4 * * *** Relative 1.2 ** * *** Entropy 1.0 ******** (12.1 bits) 0.8 ******** 0.6 ******** 0.4 ******** 0.2 ******** 0.0 -------- Multilevel GGTTCAAA consensus G A sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGKTMAAA MEME-5 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr9:132913304-132913384 18 1.59e-05 gcgttgctct ggttcaaa caccctgaca chr3:44482949-44483029 53 1.59e-05 gagtcactct ggttcaaa cgcctctgac chr2:172435101-172435181 34 1.59e-05 gagtcgctct ggttcaaa cacctcagac chr6:147770879-147770959 55 1.59e-05 gagacattct ggttcaaa tgcctctgac chr17:46903266-46903346 55 1.59e-05 gagtcactct ggttcaaa cacctctgac chr12:131847296-13184737 45 1.59e-05 gagtcactct ggttcaaa cgtctctggc chr20:39577467-39577547 37 1.59e-05 gagttgctct ggttcaaa tgcctccgaG chr12:132090143-13209022 21 1.59e-05 gagtcattct ggttcaaa tgcctctgac chr12:127388139-12738821 12 1.59e-05 gagttgctca ggttcaaa tgtctttgac chr4:154458952-154459032 20 1.59e-05 gagttgctct ggttcaaa agcctctgac chr16:77773537-77773617 61 1.59e-05 gagttgctct ggttcaaa cgcctctgac chr17:41430093-41430173 45 1.59e-05 gagtcgcttt ggttcaaa tgcctcggac chr15:29965589-29965669 21 1.59e-05 gagtcgctgt ggttcaaa cacctctgac chr7:29659598-29659678 66 1.59e-05 gagttgctgt ggttcaaa cacctct chr9:110438232-110438312 32 1.59e-05 gagtcactct ggttcaaa cgcctctgag chr17:47154388-47154468 45 1.59e-05 gagtcgctct ggttcaaa caactctgac chr5:31362439-31362519 5 1.59e-05 ctct ggttcaaa cacctctgac chr4:74962377-74962457 46 4.79e-05 gagttgctct ggttaaaa cgtctctgcc chr7:84451405-84451485 48 4.79e-05 gagtcactct ggttaaaa cgcttctgac chr9:139098860-139098940 30 4.79e-05 AGCACAGAGG GGTTAAAA AGTGTGAAAC chr15:57075509-57075589 72 6.41e-05 agcaggggct gggtaaaa c chr12:96476887-96476967 73 6.41e-05 aataggggct gggtaaaa chr6:164758824-164758904 68 6.41e-05 aataggggct gggtaaaa tgagg chr11:100885499-10088557 27 6.41e-05 aataggggct gggtaaaa taaggctgag chr16:17684952-17685032 63 6.41e-05 aataagggct gggtaaaa taagactgag chrX:67682130-67682210 67 6.41e-05 aataggtgct gggtaaaa taaggc chr3:32090158-32090238 70 6.41e-05 aataggggct gggtaaaa taa chr1:247531189-247531269 66 6.41e-05 aagatgggct gggtaaaa aaaagct chr5:102393008-102393088 57 6.41e-05 aatgggggct gggtaaaa tgaagctgag chr1:207536476-207536556 19 6.41e-05 cgtcaattga gGGTAAAA CAGAATTGGC chr10:125701742-12570182 64 6.41e-05 ggtaaaccga gggtaaaa tgacctgct chr1:223079699-223079779 56 6.41e-05 aataggggct gggtaaaa aaaacgctgc chr8:29474742-29474822 60 6.41e-05 aatagggact gggtaaaa taaggcgaag chr8:20134432-20134512 67 6.41e-05 aataggggct gggtaaaa taaggc chr21:36590167-36590247 16 8.02e-05 AAGAGAAATG TGTTCAAA AACAGCATGG chr8:1897661-1897741 40 8.02e-05 CTGTCCCGCA TGTTCAAA GGAGGATATT chr7:123633161-123633241 35 9.56e-05 gagtcactct ggttccaa tgcttctgac chr1:9138448-9138528 46 9.56e-05 gagtcgctct ggttccaa tgcctctgac chr19:4342879-4342959 13 1.28e-04 GTCTGCCCAT TGGTCAAA TCCGAGTTGG chr1:221896523-221896603 60 1.28e-04 CTGATCCTAG TGGTCAAA AGCAGTTGCT chr4:100656053-100656133 11 1.59e-04 gagttagtct ggttcaca cacctctgac chr14:103000329-10300040 33 1.59e-04 gagttgctct ggttcaca caactcaaca chr20:46768484-46768564 13 1.59e-04 gagttgctct ggttcaag tgcctctgac chr17:72459568-72459648 36 1.59e-04 AGGACTGGGT GGTTCACA GGACTCAATG chr20:3646633-3646713 33 1.59e-04 gagttgctct ggttcaca ggcctctgac chr17:46133341-46133421 39 1.90e-04 AAGTTTTAAG GGGTCCAA TCCCCAAAGC chr8:29474945-29475025 72 1.90e-04 tgcattagca ggttacaa g chr6:136748199-136748279 20 2.07e-04 GACCATTACG TGGTAAAA AGTAACATGA chr12:127437991-12743807 61 2.07e-04 aataagggct tggtaaaa taatgctgtg chr4:79615513-79615593 10 2.70e-04 cagtttgga ggttaaag gtaagatgga chr19:52290328-52290408 8 2.70e-04 TCTCCAA GGGTCAAG GTAAAGAGAG chr3:39326249-39326329 20 2.70e-04 agctgaaaaa gggtcaag tcaggattgg chr6:91167307-91167387 27 3.01e-04 atgacttcat gggtacaa cgtggccatg chr15:60314140-60314220 45 3.01e-04 gtgtcgctcc agttcaaa tgcctctgac chr12:31887151-31887231 22 3.65e-04 gagtcggtta agttaaaa ctctttcacc -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGKTMAAA MEME-5 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr9:132913304-132913384 1.6e-05 17_[+5]_55 chr3:44482949-44483029 1.6e-05 52_[+5]_20 chr2:172435101-172435181 1.6e-05 33_[+5]_39 chr6:147770879-147770959 1.6e-05 54_[+5]_18 chr17:46903266-46903346 1.6e-05 54_[+5]_18 chr12:131847296-13184737 1.6e-05 44_[+5]_28 chr20:39577467-39577547 1.6e-05 36_[+5]_36 chr12:132090143-13209022 1.6e-05 20_[+5]_52 chr12:127388139-12738821 1.6e-05 11_[+5]_61 chr4:154458952-154459032 1.6e-05 19_[+5]_53 chr16:77773537-77773617 1.6e-05 60_[+5]_12 chr17:41430093-41430173 1.6e-05 44_[+5]_28 chr15:29965589-29965669 1.6e-05 20_[+5]_52 chr7:29659598-29659678 1.6e-05 65_[+5]_7 chr9:110438232-110438312 1.6e-05 31_[+5]_41 chr17:47154388-47154468 1.6e-05 44_[+5]_28 chr5:31362439-31362519 1.6e-05 4_[+5]_68 chr4:74962377-74962457 4.8e-05 45_[+5]_27 chr7:84451405-84451485 4.8e-05 47_[+5]_25 chr9:139098860-139098940 4.8e-05 29_[+5]_43 chr15:57075509-57075589 6.4e-05 71_[+5]_1 chr12:96476887-96476967 6.4e-05 72_[+5] chr6:164758824-164758904 6.4e-05 67_[+5]_5 chr11:100885499-10088557 6.4e-05 26_[+5]_46 chr16:17684952-17685032 6.4e-05 62_[+5]_10 chrX:67682130-67682210 6.4e-05 66_[+5]_6 chr3:32090158-32090238 6.4e-05 69_[+5]_3 chr1:247531189-247531269 6.4e-05 65_[+5]_7 chr5:102393008-102393088 6.4e-05 56_[+5]_16 chr1:207536476-207536556 6.4e-05 18_[+5]_54 chr10:125701742-12570182 6.4e-05 63_[+5]_9 chr1:223079699-223079779 6.4e-05 55_[+5]_17 chr8:29474742-29474822 6.4e-05 59_[+5]_13 chr8:20134432-20134512 6.4e-05 66_[+5]_6 chr21:36590167-36590247 8e-05 15_[+5]_57 chr8:1897661-1897741 8e-05 39_[+5]_33 chr7:123633161-123633241 9.6e-05 34_[+5]_38 chr1:9138448-9138528 9.6e-05 45_[+5]_27 chr19:4342879-4342959 0.00013 12_[+5]_60 chr1:221896523-221896603 0.00013 59_[+5]_13 chr4:100656053-100656133 0.00016 10_[+5]_62 chr14:103000329-10300040 0.00016 32_[+5]_40 chr20:46768484-46768564 0.00016 12_[+5]_60 chr17:72459568-72459648 0.00016 35_[+5]_37 chr20:3646633-3646713 0.00016 32_[+5]_40 chr17:46133341-46133421 0.00019 38_[+5]_34 chr8:29474945-29475025 0.00019 71_[+5]_1 chr6:136748199-136748279 0.00021 19_[+5]_53 chr12:127437991-12743807 0.00021 60_[+5]_12 chr4:79615513-79615593 0.00027 9_[+5]_63 chr19:52290328-52290408 0.00027 7_[+5]_65 chr3:39326249-39326329 0.00027 19_[+5]_53 chr6:91167307-91167387 0.0003 26_[+5]_46 chr15:60314140-60314220 0.0003 44_[+5]_28 chr12:31887151-31887231 0.00037 21_[+5]_51 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGKTMAAA MEME-5 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF GGKTMAAA width=8 seqs=55 chr9:132913304-132913384 ( 18) GGTTCAAA 1 chr3:44482949-44483029 ( 53) GGTTCAAA 1 chr2:172435101-172435181 ( 34) GGTTCAAA 1 chr6:147770879-147770959 ( 55) GGTTCAAA 1 chr17:46903266-46903346 ( 55) GGTTCAAA 1 chr12:131847296-13184737 ( 45) GGTTCAAA 1 chr20:39577467-39577547 ( 37) GGTTCAAA 1 chr12:132090143-13209022 ( 21) GGTTCAAA 1 chr12:127388139-12738821 ( 12) GGTTCAAA 1 chr4:154458952-154459032 ( 20) GGTTCAAA 1 chr16:77773537-77773617 ( 61) GGTTCAAA 1 chr17:41430093-41430173 ( 45) GGTTCAAA 1 chr15:29965589-29965669 ( 21) GGTTCAAA 1 chr7:29659598-29659678 ( 66) GGTTCAAA 1 chr9:110438232-110438312 ( 32) GGTTCAAA 1 chr17:47154388-47154468 ( 45) GGTTCAAA 1 chr5:31362439-31362519 ( 5) GGTTCAAA 1 chr4:74962377-74962457 ( 46) GGTTAAAA 1 chr7:84451405-84451485 ( 48) GGTTAAAA 1 chr9:139098860-139098940 ( 30) GGTTAAAA 1 chr15:57075509-57075589 ( 72) GGGTAAAA 1 chr12:96476887-96476967 ( 73) GGGTAAAA 1 chr6:164758824-164758904 ( 68) GGGTAAAA 1 chr11:100885499-10088557 ( 27) GGGTAAAA 1 chr16:17684952-17685032 ( 63) GGGTAAAA 1 chrX:67682130-67682210 ( 67) GGGTAAAA 1 chr3:32090158-32090238 ( 70) GGGTAAAA 1 chr1:247531189-247531269 ( 66) GGGTAAAA 1 chr5:102393008-102393088 ( 57) GGGTAAAA 1 chr1:207536476-207536556 ( 19) GGGTAAAA 1 chr10:125701742-12570182 ( 64) GGGTAAAA 1 chr1:223079699-223079779 ( 56) GGGTAAAA 1 chr8:29474742-29474822 ( 60) GGGTAAAA 1 chr8:20134432-20134512 ( 67) GGGTAAAA 1 chr21:36590167-36590247 ( 16) TGTTCAAA 1 chr8:1897661-1897741 ( 40) TGTTCAAA 1 chr7:123633161-123633241 ( 35) GGTTCCAA 1 chr1:9138448-9138528 ( 46) GGTTCCAA 1 chr19:4342879-4342959 ( 13) TGGTCAAA 1 chr1:221896523-221896603 ( 60) TGGTCAAA 1 chr4:100656053-100656133 ( 11) GGTTCACA 1 chr14:103000329-10300040 ( 33) GGTTCACA 1 chr20:46768484-46768564 ( 13) GGTTCAAG 1 chr17:72459568-72459648 ( 36) GGTTCACA 1 chr20:3646633-3646713 ( 33) GGTTCACA 1 chr17:46133341-46133421 ( 39) GGGTCCAA 1 chr8:29474945-29475025 ( 72) GGTTACAA 1 chr6:136748199-136748279 ( 20) TGGTAAAA 1 chr12:127437991-12743807 ( 61) TGGTAAAA 1 chr4:79615513-79615593 ( 10) GGTTAAAG 1 chr19:52290328-52290408 ( 8) GGGTCAAG 1 chr3:39326249-39326329 ( 20) GGGTCAAG 1 chr6:91167307-91167387 ( 27) GGGTACAA 1 chr15:60314140-60314220 ( 45) AGTTCAAA 1 chr12:31887151-31887231 ( 22) AGTTAAAA 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGKTMAAA MEME-5 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 18250 bayes= 8.19184 E= 7.2e-024 -279 -1243 177 -122 -1243 -1243 200 -1243 -1243 -1243 67 124 -1243 -1243 -1243 198 73 126 -1243 -1243 185 -142 -1243 -1243 188 -174 -1243 -1243 188 -1243 -178 -1243 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGKTMAAA MEME-5 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 55 E= 7.2e-024 0.036364 0.000000 0.854545 0.109091 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.400000 0.600000 0.000000 0.000000 0.000000 1.000000 0.418182 0.581818 0.000000 0.000000 0.909091 0.090909 0.000000 0.000000 0.927273 0.072727 0.000000 0.000000 0.927273 0.000000 0.072727 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGKTMAAA MEME-5 regular expression -------------------------------------------------------------------------------- GG[TG]T[CA]AAA -------------------------------------------------------------------------------- Time 19.40 secs. ******************************************************************************** ******************************************************************************** SUMMARY OF MOTIFS ******************************************************************************** -------------------------------------------------------------------------------- Combined block diagrams: non-overlapping sites with p-value < 0.0001 -------------------------------------------------------------------------------- SEQUENCE NAME COMBINED P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr7:150756083-150756163 7.34e-01 80 chr2:102875204-102875284 1.19e-01 80 chr10:91115232-91115312 1.92e-03 61_[+4(1.52e-05)]_11 chr6:18242834-18242914 7.86e-02 37_[+3(6.32e-05)]_35 chr5:43773361-43773441 1.39e-01 80 chr3:47266786-47266866 1.79e-01 80 chr12:65955734-65955814 4.88e-04 58_[+4(1.52e-05)]_14 chr2:11262744-11262824 7.66e-04 10_[+1(1.57e-05)]_62 chr18:9321102-9321182 6.28e-01 80 chr1:9138448-9138528 9.78e-05 28_[+1(1.57e-05)]_9_[+5(9.56e-05)]_\ 27 chr2:167267547-167267627 5.35e-01 80 chr7:106457748-106457828 8.69e-01 80 chr5:141846214-141846294 5.75e-02 80 chr15:60314140-60314220 1.77e-05 11_[+4(7.50e-05)]_8_[+1(1.57e-05)]_\ 45 chr20:3646633-3646713 4.57e-04 80 chr1:221896523-221896603 2.52e-02 80 chr7:129598952-129599032 5.59e-01 80 chr5:131793328-131793408 9.60e-01 80 chr5:31362439-31362519 3.31e-02 4_[+5(1.59e-05)]_68 chr22:22378240-22378320 8.97e-04 24_[+1(4.67e-05)]_[+2(6.13e-05)]_40 chr7:105985927-105986007 3.63e-01 80 chr4:110795286-110795366 4.71e-01 80 chr8:20134432-20134512 8.46e-07 33_[+4(1.52e-05)]_8_[+3(4.77e-05)]_\ 9_[+5(6.41e-05)]_6 chr3:125919551-125919631 2.46e-02 20_[+2(3.08e-05)]_52 chr1:221949868-221949948 5.98e-01 80 chr8:29474742-29474822 6.59e-07 26_[+4(6.01e-05)]_8_[+3(1.56e-05)]_\ 9_[+5(6.41e-05)]_13 chr8:1897661-1897741 4.68e-02 39_[+5(8.02e-05)]_33 chr16:4501079-4501159 5.92e-01 80 chr11:221060-221140 7.19e-01 80 chr7:105987809-105987889 2.41e-02 80 chr17:45317569-45317649 3.22e-01 80 chr10:112935716-11293579 8.61e-01 80 chr2:109883687-109883767 4.03e-02 80 chr1:40367560-40367640 9.91e-01 80 chr7:120799831-120799911 9.05e-01 80 chr1:158985289-158985369 3.92e-02 80 chr17:76297540-76297620 1.79e-01 80 chrX:15901566-15901646 2.00e-03 6_[+1(1.57e-05)]_66 chr7:106452557-106452637 5.46e-01 80 chr21:41214895-41214975 3.41e-01 80 chr17:46438345-46438425 9.89e-01 80 chr7:123633161-123633241 7.17e-07 2_[+4(7.50e-05)]_7_[+1(1.57e-05)]_\ [+2(6.13e-05)]_1_[+5(9.56e-05)]_38 chr5:169514576-169514656 1.21e-03 80 chr7:150756563-150756643 9.83e-01 80 chr2:208176484-208176564 3.92e-01 80 chr13:61158205-61158285 2.37e-02 36_[+3(7.83e-05)]_36 chr14:35834896-35834976 4.33e-01 80 chr8:29474945-29475025 4.43e-02 80 chr17:46438817-46438897 2.79e-01 80 chr6:69345059-69345139 9.74e-01 80 chr21:39786032-39786112 6.61e-01 80 chr17:47154388-47154468 6.24e-07 11_[+4(7.50e-05)]_8_[+1(1.57e-05)]_\ 9_[+5(1.59e-05)]_28 chr1:119506153-119506233 6.17e-02 80 chr2:152824773-152824853 6.22e-01 80 chr9:110438232-110438312 1.60e-05 14_[+1(1.57e-05)]_[+2(6.13e-05)]_1_\ [+5(1.59e-05)]_41 chr4:38969008-38969088 4.68e-01 80 chr2:131622444-131622524 5.08e-01 80 chr7:77256118-77256198 1.44e-01 80 chr7:24818334-24818414 4.04e-02 80 chr7:29659598-29659678 5.52e-07 32_[+4(7.50e-05)]_8_[+1(1.57e-05)]_\ 9_[+5(1.59e-05)]_7 chr11:13299093-13299173 8.82e-01 80 chr17:72459568-72459648 5.99e-02 80 chr3:45147771-45147851 6.08e-01 80 chr10:15356059-15356139 7.87e-01 80 chr15:29965589-29965669 2.62e-05 3_[+1(1.57e-05)]_9_[+5(1.59e-05)]_\ 52 chr8:144016068-144016148 5.03e-01 80 chr7:106183514-106183594 9.00e-01 80 chr9:101558837-101558917 1.00e+00 80 chr6:43538825-43538905 3.04e-01 80 chr4:186217951-186218031 1.22e-01 80 chr7:116593778-116593858 5.86e-01 80 chr5:88179056-88179136 8.03e-01 80 chr1:94480716-94480796 9.06e-02 80 chr12:76116567-76116647 1.99e-01 80 chr7:134047524-134047604 6.59e-01 80 chr2:10091558-10091638 9.98e-01 80 chr10:15669699-15669779 1.13e-03 63_[+4(1.52e-05)]_9 chr19:11071600-11071680 9.70e-01 80 chr3:185529543-185529623 8.54e-01 80 chr21:30164076-30164156 3.39e-04 21_[+2(3.08e-05)]_[+3(1.56e-05)]_43 chr20:33893571-33893651 1.18e-02 80 chr3:154794881-154794961 2.07e-04 19_[+1(1.57e-05)]_53 chr1:223079699-223079779 2.72e-06 22_[+4(1.52e-05)]_25_[+5(6.41e-05)]_\ 17 chr15:68193178-68193258 1.06e-04 18_[+1(1.57e-05)]_54 chr1:119506487-119506567 6.79e-01 80 chr1:205140008-205140088 1.62e-01 80 chr12:50124470-50124550 4.22e-01 80 chr19:15408458-15408538 5.83e-01 80 chr4:80773552-80773632 7.01e-02 80 chr10:125701742-12570182 1.31e-06 27_[+2(3.08e-05)]_[+3(1.56e-05)]_20_\ [+5(6.41e-05)]_9 chr17:56991452-56991532 3.73e-01 80 chr2:199079004-199079084 2.53e-01 80 chr6:37941218-37941298 7.80e-02 63_[+1(4.67e-05)]_9 chr14:93042197-93042277 2.49e-03 54_[+1(1.57e-05)]_18 chr1:207536476-207536556 6.09e-02 18_[+5(6.41e-05)]_54 chr17:41430093-41430173 4.77e-04 27_[+1(3.14e-05)]_9_[+5(1.59e-05)]_\ 28 chr15:41769728-41769808 8.37e-02 48_[+3(7.83e-05)]_24 chr15:68193386-68193466 8.97e-01 80 chr1:89636360-89636440 2.19e-02 26_[+1(3.14e-05)]_46 chr16:77773537-77773617 5.62e-07 27_[+4(7.50e-05)]_8_[+1(1.57e-05)]_\ 9_[+5(1.59e-05)]_12 chr6:14077530-14077610 5.57e-03 61_[+3(1.56e-05)]_11 chr2:65893404-65893484 3.20e-02 23_[+3(4.77e-05)]_49 chr18:20048333-20048413 5.97e-02 80 chr8:94886447-94886527 1.20e-02 1_[+2(6.13e-05)]_71 chr11:35358781-35358861 8.99e-02 80 chr20:46768484-46768564 8.41e-03 80 chr3:177766649-177766729 7.28e-02 80 chr4:154458952-154459032 1.83e-04 2_[+1(9.47e-05)]_9_[+5(1.59e-05)]_\ 53 chr12:13441532-13441612 1.73e-01 80 chr11:14916800-14916880 4.25e-01 80 chr7:25967352-25967432 3.48e-01 80 chr3:39326249-39326329 4.63e-03 68_[+1(9.47e-05)]_4 chr12:127388139-12738821 3.01e-03 11_[+5(1.59e-05)]_61 chr12:132090143-13209022 1.55e-04 3_[+1(1.57e-05)]_9_[+5(1.59e-05)]_\ 52 chr11:20000320-20000400 1.91e-01 45_[+3(4.77e-05)]_27 chr2:152899177-152899257 2.20e-03 62_[+4(1.52e-05)]_10 chr4:75398109-75398189 9.20e-01 80 chr20:30101798-30101878 4.43e-01 80 chr7:98741761-98741841 9.99e-01 80 chr15:41769525-41769605 8.87e-01 80 chr1:222135840-222135920 1.98e-01 80 chr22:48041334-48041414 3.56e-03 80 chr12:31771228-31771308 1.84e-02 28_[+1(3.14e-05)]_44 chr4:57566987-57567067 2.23e-03 60_[+2(3.08e-05)]_12 chr1:18748635-18748715 1.92e-07 59_[+2(3.08e-05)]_[+3(1.56e-05)]_5 chr7:13889210-13889290 7.49e-01 80 chr5:102393008-102393088 1.11e-04 39_[+3(1.56e-05)]_9_[+5(6.41e-05)]_\ 16 chr18:5296170-5296250 9.81e-01 80 chr12:109611695-10961177 1.14e-02 80 chr17:77007704-77007784 2.42e-05 33_[+4(6.01e-05)]_8_[+3(1.56e-05)]_\ 23 chr3:186619115-186619195 6.45e-02 80 chr9:110310778-110310858 5.33e-01 80 chr8:90809074-90809154 2.05e-05 36_[+4(1.52e-05)]_8_[+3(4.77e-05)]_\ 20 chr1:247531189-247531269 2.66e-07 36_[+1(9.47e-05)]_4_[+3(1.56e-05)]_\ 9_[+5(6.41e-05)]_7 chr3:32090158-32090238 1.00e-06 36_[+4(1.52e-05)]_8_[+3(4.77e-05)]_\ 9_[+5(6.41e-05)]_3 chr21:46238039-46238119 8.11e-01 80 chr2:70141854-70141934 7.53e-02 80 chr3:125919753-125919833 5.67e-01 80 chr19:4342879-4342959 2.70e-02 80 chr1:181143020-181143100 1.09e-02 80 chr9:88798424-88798504 4.11e-03 60_[+3(1.56e-05)]_12 chr8:28982989-28983069 2.79e-01 80 chr7:127877314-127877394 1.47e-01 80 chr16:12704977-12705057 5.09e-05 40_[+4(1.52e-05)]_8_[+3(6.32e-05)]_\ 16 chrX:67682130-67682210 4.22e-06 33_[+4(6.01e-05)]_[+2(3.08e-05)]_17_\ [+5(6.41e-05)]_6 chr9:114987105-114987185 4.27e-01 80 chr20:39577467-39577547 4.13e-06 19_[+1(1.57e-05)]_9_[+5(1.59e-05)]_\ 36 chr7:123262890-123262970 7.29e-01 80 chrX:3619582-3619662 4.33e-05 48_[+4(1.52e-05)]_8_[+3(1.56e-05)]_\ 8 chr16:17684952-17685032 2.81e-06 29_[+4(1.52e-05)]_8_[+3(1.56e-05)]_\ 9_[+5(6.41e-05)]_10 chr7:16532483-16532563 6.20e-02 80 chr12:109232235-10923231 2.70e-01 80 chr10:52346306-52346386 9.61e-01 80 chr17:6822507-6822587 9.93e-01 80 chr1:204894950-204895030 5.03e-01 80 chr17:3907973-3908053 7.26e-01 80 chr17:46438545-46438625 4.39e-01 80 chr21:36590167-36590247 3.70e-03 15_[+5(8.02e-05)]_57 chr12:31887151-31887231 8.89e-04 4_[+1(1.57e-05)]_68 chr10:74076902-74076982 8.64e-01 80 chr5:36703537-36703617 4.93e-01 80 chr20:343123-343203 1.13e-01 80 chr11:100885499-10088557 2.66e-05 1_[+2(3.08e-05)]_[+3(1.56e-05)]_9_\ [+5(6.41e-05)]_46 chr6:164758824-164758904 4.13e-07 34_[+4(1.52e-05)]_8_[+3(1.56e-05)]_\ 9_[+5(6.41e-05)]_5 chr2:46295043-46295123 7.29e-01 80 chr19:18303753-18303833 5.71e-01 80 chr9:101614431-101614511 5.87e-04 12_[+1(1.57e-05)]_60 chr6:31364693-31364773 1.94e-02 50_[+1(1.57e-05)]_22 chr12:131847296-13184737 3.04e-07 27_[+1(1.57e-05)]_[+2(6.13e-05)]_1_\ [+5(1.59e-05)]_28 chr2:70161554-70161634 6.83e-01 80 chr5:148533435-148533515 1.91e-02 80 chr6:136726785-136726865 1.21e-01 80 chr20:23137027-23137107 7.48e-01 80 chr16:87421717-87421797 4.24e-01 80 chr14:103000329-10300040 1.41e-04 15_[+1(1.57e-05)]_57 chr12:127437991-12743807 8.14e-07 27_[+4(1.52e-05)]_8_[+3(1.56e-05)]_\ 29 chr1:204141127-204141207 5.92e-01 80 chr9:139098860-139098940 2.93e-03 29_[+5(4.79e-05)]_43 chr1:116417341-116417421 6.98e-02 80 chr19:6060113-6060193 9.63e-01 80 chr12:122818299-12281837 7.88e-02 13_[+1(9.47e-05)]_59 chr17:46903266-46903346 2.00e-06 37_[+1(1.57e-05)]_[+2(6.13e-05)]_1_\ [+5(1.59e-05)]_18 chr1:167795003-167795083 4.51e-01 80 chr17:47910419-47910499 2.74e-01 80 chr11:46143084-46143164 4.47e-01 80 chr14:64830109-64830189 3.09e-05 62_[+3(1.56e-05)]_10 chr4:74962581-74962661 7.78e-01 80 chr2:122003587-122003667 2.13e-01 80 chr2:183900593-183900673 8.46e-01 80 chr6:27968269-27968349 1.63e-02 80 chr20:34671542-34671622 9.99e-02 80 chr5:179051470-179051550 5.42e-01 80 chr3:101362781-101362861 6.13e-02 80 chr17:46133341-46133421 1.27e-01 80 chr16:2264914-2264994 9.66e-01 80 chr10:3933010-3933090 8.91e-03 80 chr6:147770879-147770959 6.41e-07 21_[+4(7.50e-05)]_8_[+1(1.57e-05)]_\ 9_[+5(1.59e-05)]_18 chr3:45209109-45209189 4.65e-01 80 chr1:25407061-25407141 5.37e-02 80 chr20:42087059-42087139 7.67e-01 80 chr12:128801835-12880191 2.33e-01 80 chr11:63302443-63302523 1.62e-04 11_[+1(3.14e-05)]_14_[+2(3.08e-05)]_\ 39 chr21:27472126-27472206 1.54e-01 80 chr1:150588050-150588130 1.81e-01 80 chr12:96476887-96476967 1.35e-07 39_[+4(1.52e-05)]_[+2(3.08e-05)]_\ [+3(1.56e-05)]_9_[+5(6.41e-05)] chr10:4868234-4868314 3.31e-01 80 chr2:128685152-128685232 4.01e-03 20_[+2(3.08e-05)]_52 chr16:50491937-50492017 7.66e-05 51_[+4(6.01e-05)]_8_[+3(1.56e-05)]_\ 5 chr2:205219397-205219477 9.63e-02 15_[+1(9.47e-05)]_10_[+1(9.47e-05)]_\ 39 chr1:212651640-212651720 1.48e-02 37_[+2(3.08e-05)]_35 chr14:58765062-58765142 5.74e-01 80 chr12:31771428-31771508 6.44e-01 80 chr3:37866004-37866084 7.20e-05 47_[+4(7.50e-05)]_8_[+1(1.57e-05)]_\ 9 chr2:172435101-172435181 4.77e-06 16_[+1(1.57e-05)]_9_[+5(1.59e-05)]_\ 39 chr1:181143221-181143301 6.30e-03 52_[+1(1.57e-05)]_20 chr19:52290328-52290408 1.89e-05 72_[+3(4.77e-05)] chr3:44482949-44483029 3.16e-07 18_[+4(7.50e-05)]_9_[+1(1.57e-05)]_\ [+2(6.13e-05)]_1_[+5(1.59e-05)]_20 chr16:55410653-55410733 5.15e-01 80 chr6:91167307-91167387 3.18e-03 80 chr12:33099606-33099686 3.40e-04 5_[+4(1.52e-05)]_[+2(3.08e-05)]_59 chr6:150639001-150639081 3.24e-01 80 chr5:138862122-138862202 8.48e-01 80 chr15:57075509-57075589 1.14e-05 38_[+4(1.52e-05)]_8_[+3(1.56e-05)]_\ 9_[+5(6.41e-05)]_1 chr16:58467641-58467721 6.93e-04 44_[+1(3.14e-05)]_28 chr8:38854408-38854488 8.71e-01 80 chr12:9803537-9803617 9.45e-01 80 chr7:84451405-84451485 5.54e-07 14_[+4(7.50e-05)]_8_[+1(4.67e-05)]_\ [+2(6.13e-05)]_1_[+5(4.79e-05)]_25 chr20:52534130-52534210 4.81e-01 80 chr3:39363607-39363687 1.30e-02 4_[+1(1.57e-05)]_68 chr9:132913304-132913384 4.39e-04 [+1(1.57e-05)]_9_[+5(1.59e-05)]_55 chr3:39363931-39364011 1.10e-01 52_[+1(9.47e-05)]_20 chr21:38939264-38939344 9.55e-03 80 chr4:74962377-74962457 6.39e-06 28_[+1(1.57e-05)]_9_[+5(4.79e-05)]_\ 27 chr1:226277166-226277246 2.81e-01 80 chr8:98774866-98774946 1.17e-05 21_[+2(3.08e-05)]_[+3(1.56e-05)]_43 chr5:90587914-90587994 1.11e-04 47_[+4(7.50e-05)]_8_[+1(1.57e-05)]_\ 9 chr4:79615513-79615593 4.77e-03 18_[+1(9.47e-05)]_54 chr9:131843224-131843304 8.83e-01 80 chr4:100656053-100656133 9.66e-02 80 chr11:97844198-97844278 5.33e-02 53_[+2(4.63e-05)]_19 chr5:5586006-5586086 2.66e-03 38_[+4(1.52e-05)]_34 chr6:36258573-36258653 2.91e-01 80 chr8:20134642-20134722 7.38e-02 14_[+1(1.57e-05)]_58 chr9:104603605-104603685 9.90e-01 80 chr10:50465381-50465461 1.49e-01 80 chr3:99495993-99496073 2.40e-03 20_[+1(1.57e-05)]_52 chr6:43905135-43905215 8.23e-01 80 chr6:136748199-136748279 1.81e-01 80 chr3:45102725-45102805 2.50e-04 64_[+4(1.52e-05)]_[+2(3.08e-05)] chr8:42010344-42010424 2.48e-01 80 -------------------------------------------------------------------------------- ******************************************************************************** ******************************************************************************** Stopped because requested number of motifs (5) found. ******************************************************************************** CPU: c22n05.farnam.hpc.yale.internal ********************************************************************************