******************************************************************************** MEME - Motif discovery tool ******************************************************************************** MEME version 5.3.3 (Release date: Sun Feb 7 15:39:52 2021 -0800) For further information on how to interpret these results please access https://meme-suite.org/meme. To get a copy of the MEME Suite software please access https://meme-suite.org. ******************************************************************************** ******************************************************************************** REFERENCE ******************************************************************************** If you use this program in your research, please cite: Timothy L. Bailey and Charles Elkan, "Fitting a mixture model by expectation maximization to discover motifs in biopolymers", Proceedings of the Second International Conference on Intelligent Systems for Molecular Biology, pp. 28-36, AAAI Press, Menlo Park, California, 1994. ******************************************************************************** ******************************************************************************** TRAINING SET ******************************************************************************** PRIMARY SEQUENCES= ../result/final_prediction/K562/fasta/RankLinear0.6_40/ZNF584.fasta CONTROL SEQUENCES= --none-- ALPHABET= ACGT Sequence name Weight Length Sequence name Weight Length ------------- ------ ------ ------------- ------ ------ chr7:115838961-115839041 1.0000 80 chr15:57100517-57100597 1.0000 80 chr21:40536586-40536666 1.0000 80 chr11:69275557-69275637 1.0000 80 chr3:186987425-186987505 1.0000 80 chr7:128913936-128914016 1.0000 80 chr21:30887119-30887199 1.0000 80 chr2:113207587-113207667 1.0000 80 chr10:4083896-4083976 1.0000 80 chr11:93052562-93052642 1.0000 80 chr1:153530511-153530591 1.0000 80 chr21:40097301-40097381 1.0000 80 chr17:35622508-35622588 1.0000 80 chr14:90914217-90914297 1.0000 80 chr6:44752091-44752171 1.0000 80 chr12:94356271-94356351 1.0000 80 chr10:13065918-13065998 1.0000 80 chr19:46830024-46830104 1.0000 80 chr2:241284492-241284572 1.0000 80 chr3:115705604-115705684 1.0000 80 chr10:98243105-98243185 1.0000 80 chr1:63773026-63773106 1.0000 80 chr2:152124210-152124290 1.0000 80 chr21:44300621-44300701 1.0000 80 chr1:225054801-225054881 1.0000 80 chr5:134495871-134495951 1.0000 80 chr3:128442479-128442559 1.0000 80 chr11:43740082-43740162 1.0000 80 chr1:214518392-214518472 1.0000 80 chr18:46253539-46253619 1.0000 80 chr15:69981606-69981686 1.0000 80 chr3:40665839-40665919 1.0000 80 chr11:69275785-69275865 1.0000 80 chr2:170953708-170953788 1.0000 80 chr21:30887327-30887407 1.0000 80 chr1:145046462-145046542 1.0000 80 chr13:29113321-29113401 1.0000 80 chr18:46253754-46253834 1.0000 80 chr20:36087321-36087401 1.0000 80 chr1:39280275-39280355 1.0000 80 chr6:148376732-148376812 1.0000 80 chr2:130588750-130588830 1.0000 80 chr10:21771909-21771989 1.0000 80 chr2:43317614-43317694 1.0000 80 chr1:27132301-27132381 1.0000 80 chr17:47358419-47358499 1.0000 80 chr2:241284694-241284774 1.0000 80 chr2:203113525-203113605 1.0000 80 chr19:46830224-46830304 1.0000 80 chr12:57771957-57772037 1.0000 80 chr1:115664573-115664653 1.0000 80 chr1:32997701-32997781 1.0000 80 chr11:9677685-9677765 1.0000 80 chr18:20811428-20811508 1.0000 80 chr7:93256340-93256420 1.0000 80 chr6:144315261-144315341 1.0000 80 chr7:51043920-51044000 1.0000 80 chr17:45396061-45396141 1.0000 80 chr2:200766824-200766904 1.0000 80 chr10:98243305-98243385 1.0000 80 chr17:62368802-62368882 1.0000 80 chr3:15847480-15847560 1.0000 80 chr6:15852696-15852776 1.0000 80 chr6:140026580-140026660 1.0000 80 chr1:214518597-214518677 1.0000 80 chr1:39280476-39280556 1.0000 80 chr3:40666038-40666118 1.0000 80 chr7:134149366-134149446 1.0000 80 chr3:176723940-176724020 1.0000 80 chr14:90914418-90914498 1.0000 80 chr8:98524356-98524436 1.0000 80 chr13:75973446-75973526 1.0000 80 chr15:56332414-56332494 1.0000 80 chr5:34505231-34505311 1.0000 80 chr11:116549763-11654984 1.0000 80 chr18:1498398-1498478 1.0000 80 chr5:179462717-179462797 1.0000 80 chr10:4084103-4084183 1.0000 80 chr7:51397680-51397760 1.0000 80 chr2:20795522-20795602 1.0000 80 chr20:520594-520674 1.0000 80 chr4:111517746-111517826 1.0000 80 chr2:102875203-102875283 1.0000 80 chr2:170953914-170953994 1.0000 80 chr11:93052765-93052845 1.0000 80 chr2:11262755-11262835 1.0000 80 chr4:26107510-26107590 1.0000 80 chr7:155071656-155071736 1.0000 80 chr6:142452112-142452192 1.0000 80 chr10:91115228-91115308 1.0000 80 chr6:18242813-18242893 1.0000 80 chr7:101215595-101215675 1.0000 80 chr1:40489210-40489290 1.0000 80 chr17:47358618-47358698 1.0000 80 chr7:128543358-128543438 1.0000 80 chr1:224742412-224742492 1.0000 80 chr1:68327709-68327789 1.0000 80 chr5:158769022-158769102 1.0000 80 chr2:69064580-69064660 1.0000 80 chr15:60314165-60314245 1.0000 80 chr16:54560370-54560450 1.0000 80 chr16:54560167-54560247 1.0000 80 chr12:124712850-12471293 1.0000 80 chr12:32173973-32174053 1.0000 80 chr7:120777917-120777997 1.0000 80 chr17:72459871-72459951 1.0000 80 chr8:54758741-54758821 1.0000 80 chr7:134832727-134832807 1.0000 80 chr16:86200179-86200259 1.0000 80 chr1:63773229-63773309 1.0000 80 chr7:105985508-105985588 1.0000 80 chr20:3646632-3646712 1.0000 80 chr10:21388570-21388650 1.0000 80 chr11:19195657-19195737 1.0000 80 chr1:160520605-160520685 1.0000 80 chr2:122003633-122003713 1.0000 80 chr22:22378259-22378339 1.0000 80 chr9:33703586-33703666 1.0000 80 chr1:26663818-26663898 1.0000 80 chr8:28982908-28982988 1.0000 80 chr17:72459669-72459749 1.0000 80 chr7:24818381-24818461 1.0000 80 chr22:22378471-22378551 1.0000 80 chr12:53000785-53000865 1.0000 80 chr1:224742612-224742692 1.0000 80 chr3:46649401-46649481 1.0000 80 chr5:2691793-2691873 1.0000 80 chr9:139098892-139098972 1.0000 80 chr2:20795757-20795837 1.0000 80 chr8:98524558-98524638 1.0000 80 chr20:23270521-23270601 1.0000 80 chr6:43538787-43538867 1.0000 80 chr21:40097501-40097581 1.0000 80 chr17:48367753-48367833 1.0000 80 chr2:86055994-86056074 1.0000 80 chr3:45147730-45147810 1.0000 80 chr1:119506186-119506266 1.0000 80 chr11:221057-221137 1.0000 80 chr14:23615253-23615333 1.0000 80 chr8:20134387-20134467 1.0000 80 chr5:31362606-31362686 1.0000 80 chr1:175379865-175379945 1.0000 80 chr5:31362407-31362487 1.0000 80 chr20:57587035-57587115 1.0000 80 chr3:143162733-143162813 1.0000 80 chr8:29474744-29474824 1.0000 80 chr2:55327213-55327293 1.0000 80 chr11:35358799-35358879 1.0000 80 chr1:243978179-243978259 1.0000 80 chr10:64873914-64873994 1.0000 80 chr1:9138439-9138519 1.0000 80 chr10:21368115-21368195 1.0000 80 chr8:10634351-10634431 1.0000 80 chr15:58769656-58769736 1.0000 80 chr11:45060633-45060713 1.0000 80 chr7:134047419-134047499 1.0000 80 chr2:46294824-46294904 1.0000 80 chr1:40367604-40367684 1.0000 80 chr5:168221161-168221241 1.0000 80 chr2:43595781-43595861 1.0000 80 chr12:50124557-50124637 1.0000 80 chr3:125919572-125919652 1.0000 80 chr1:89636350-89636430 1.0000 80 chr2:152528957-152529037 1.0000 80 chr15:29965553-29965633 1.0000 80 chrX:15901551-15901631 1.0000 80 chr16:47492401-47492481 1.0000 80 chr7:123633147-123633227 1.0000 80 chr4:71579819-71579899 1.0000 80 chr4:184256747-184256827 1.0000 80 chr17:47154416-47154496 1.0000 80 chr7:120778381-120778461 1.0000 80 chr16:58467694-58467774 1.0000 80 chr6:69345093-69345173 1.0000 80 chr18:20048404-20048484 1.0000 80 chr7:6055934-6056014 1.0000 80 chr6:6655512-6655592 1.0000 80 chr4:57567012-57567092 1.0000 80 chr4:75398125-75398205 1.0000 80 chr6:20203930-20204010 1.0000 80 chr3:43128323-43128403 1.0000 80 chr6:31526578-31526658 1.0000 80 chr5:131793383-131793463 1.0000 80 chr7:93256541-93256621 1.0000 80 chr12:127438264-12743834 1.0000 80 chr11:45479284-45479364 1.0000 80 chr19:15408484-15408564 1.0000 80 chr11:14916853-14916933 1.0000 80 chr2:199079044-199079124 1.0000 80 chr2:209794441-209794521 1.0000 80 chr10:15669685-15669765 1.0000 80 chr7:120778581-120778661 1.0000 80 chr4:154458960-154459040 1.0000 80 chr1:31369046-31369126 1.0000 80 chr4:100656053-100656133 1.0000 80 chr14:93042228-93042308 1.0000 80 chr5:133944931-133945011 1.0000 80 chr16:86698214-86698294 1.0000 80 chr2:100484338-100484418 1.0000 80 chr7:29659630-29659710 1.0000 80 chr17:41430112-41430192 1.0000 80 chr5:173098338-173098418 1.0000 80 chr4:38969032-38969112 1.0000 80 chr10:33686025-33686105 1.0000 80 chr15:68193194-68193274 1.0000 80 chr22:38636968-38637048 1.0000 80 chr8:94886456-94886536 1.0000 80 chr19:11071618-11071698 1.0000 80 chr3:139882166-139882246 1.0000 80 chr12:132091202-13209128 1.0000 80 chr20:33893579-33893659 1.0000 80 chr4:103708686-103708766 1.0000 80 chr22:22139228-22139308 1.0000 80 chr8:125459576-125459656 1.0000 80 chr9:110438200-110438280 1.0000 80 chr20:46772358-46772438 1.0000 80 chr8:117889737-117889817 1.0000 80 chr20:46768473-46768553 1.0000 80 chr7:6056137-6056217 1.0000 80 chr5:5586280-5586360 1.0000 80 chr11:20000348-20000428 1.0000 80 chr12:132090139-13209021 1.0000 80 chr2:167267522-167267602 1.0000 80 chr2:7894067-7894147 1.0000 80 chr20:46768676-46768756 1.0000 80 chr11:68035113-68035193 1.0000 80 chr2:12697965-12698045 1.0000 80 chr1:112275970-112276050 1.0000 80 chr7:106457640-106457720 1.0000 80 chr7:123262854-123262934 1.0000 80 chr1:181143023-181143103 1.0000 80 chr12:127388336-12738841 1.0000 80 chr3:31514508-31514588 1.0000 80 chr1:18748639-18748719 1.0000 80 chr12:127388129-12738820 1.0000 80 chr16:87421728-87421808 1.0000 80 chr17:35622712-35622792 1.0000 80 chr10:29238508-29238588 1.0000 80 chr7:106437353-106437433 1.0000 80 chr12:31771241-31771321 1.0000 80 chr11:61717516-61717596 1.0000 80 chr16:87840646-87840726 1.0000 80 chr17:77007700-77007780 1.0000 80 chr3:115705814-115705894 1.0000 80 chr4:38939084-38939164 1.0000 80 chr3:170557427-170557507 1.0000 80 chr19:2507324-2507404 1.0000 80 chr1:224007698-224007778 1.0000 80 chr6:44030753-44030833 1.0000 80 chr3:14273457-14273537 1.0000 80 ******************************************************************************** ******************************************************************************** COMMAND LINE SUMMARY ******************************************************************************** This information can also be useful in the event you wish to report a problem with the MEME software. command: meme -oc ../result/final_prediction/K562/inference_raw/MEME/RankLinear0.6_40_ZNF584/ -dna -nmotifs 5 -w 8 -maxsize 250000 -nostatus ../result/final_prediction/K562/fasta/RankLinear0.6_40/ZNF584.fasta model: mod= zoops nmotifs= 5 evt= inf objective function: em= E-value of product of p-values starts= E-value of product of p-values strands: + width: minw= 8 maxw= 8 nsites: minsites= 2 maxsites= 250 wnsites= 0.8 theta: spmap= uni spfuzz= 0.5 em: prior= dirichlet b= 0.01 maxiter= 50 distance= 1e-05 trim: wg= 11 ws= 1 endgaps= yes data: n= 20000 N= 250 sample: seed= 0 hsfrac= 0 searchsize= 20000 norand= no csites= 1000 Letter frequencies in dataset: A 0.272 C 0.224 G 0.231 T 0.273 Background letter frequencies (from file dataset with add-one prior applied): A 0.272 C 0.224 G 0.231 T 0.273 Background model order: 0 ******************************************************************************** ******************************************************************************** MOTIF TTCWGAAW MEME-1 width = 8 sites = 103 llr = 760 E-value = 1.8e-043 ******************************************************************************** -------------------------------------------------------------------------------- Motif TTCWGAAW MEME-1 Description -------------------------------------------------------------------------------- Simplified A :::538a4 pos.-specific C ::8::::1 probability G ::::72:: matrix T aa25:::5 bits 2.2 1.9 ** * 1.7 ** * 1.5 ** * Relative 1.3 *** * Entropy 1.1 *** *** (10.6 bits) 0.9 ******* 0.6 ******** 0.4 ******** 0.2 ******** 0.0 -------- Multilevel TTCAGAAT consensus TTAG A sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTCWGAAW MEME-1 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr12:127388336-12738841 20 4.25e-05 AATAGCACCT TTCTGAAT TTCAACTTTG chr5:2691793-2691873 55 4.25e-05 atctTTAGAT TTCAGAAT TGCTGTGGTC chr16:86200179-86200259 46 4.25e-05 ccagctagat ttcagaat tgctttggac chr5:34505231-34505311 48 4.25e-05 cctaggaggt ttcagaat tgctatggat chr6:15852696-15852776 31 4.25e-05 ctgataagat ttcagaat tgctatgggc chr10:21771909-21771989 52 4.25e-05 ccgattggat ttcagaat tgctatgaac chr1:225054801-225054881 28 4.25e-05 ccagcaggat ttcagaat tgctatggac chr2:152124210-152124290 23 4.25e-05 tgaatgggat ttcagaat tgctttggcc chr1:63773026-63773106 41 4.25e-05 ttaactgaat ttcagaat tgctaaggac chr2:241284492-241284572 26 4.25e-05 gactctggat ttcagaat tgctatggac chr6:44752091-44752171 16 4.25e-05 cccatgagat ttcagaat tgctatgggc chr14:90914217-90914297 9 4.25e-05 agcaggat ttcagaat tgctatggac chr11:93052562-93052642 19 4.25e-05 ctgggtggat ttcagaat tgctatggac chr2:113207587-113207667 28 4.25e-05 aaatttggat ttcagaat tgctatggac chr7:128913936-128914016 19 4.25e-05 ctgattagat ttcagaat tgttatgggc chr3:186987425-186987505 47 4.25e-05 ctggctaaat ttcagaat tactatggag chr11:69275557-69275637 29 4.25e-05 ccagctggat ttcagaat tgctatggac chr21:40536586-40536666 29 4.25e-05 tcactgaaat ttcagaat tgttatggac chr2:7894067-7894147 40 8.47e-05 tcagctggat ttcagaaa tgctatggac chr10:33686025-33686105 31 8.47e-05 tccatagcaa ttctgaaa tcccactggg chr1:243978179-243978259 34 8.47e-05 cccatagcaa ttctgaaa tccagcaggt chr7:134832727-134832807 7 8.47e-05 CCTCAT TTCTGAAA AGTCATGGGC chr16:54560167-54560247 41 8.47e-05 tccatagcaa ttctgaaa tccagctggg chr5:158769022-158769102 43 8.47e-05 CAGAAAAGCC TTCTGAAA TGCTTTGGGC chr1:40489210-40489290 6 8.47e-05 gtgca ttctgaaa tctgggattt chr11:116549763-11654984 44 8.47e-05 ctcatagcaa ttctgaaa tcttgctggg chr17:45396061-45396141 70 8.47e-05 ttcatagcaa ttctgaaa tcc chr7:51043920-51044000 52 8.47e-05 cccacagcaa ttctgaaa tccagccgga chr7:93256340-93256420 43 8.47e-05 tccaaagcaa ttctgaaa tttagccagg chr11:9677685-9677765 29 8.47e-05 ctcatagcaa ttctgaaa tccatccagg chr1:32997701-32997781 40 8.47e-05 tccatagcaa ttctgaaa tccaactggg chr1:115664573-115664653 60 8.47e-05 tccatagcaa ttctgaaa tctatctggg chr2:43317614-43317694 56 8.47e-05 tccatagcaa ttctgaaa tccattcagg chr6:148376732-148376812 42 8.47e-05 tgcatagcaa ttctgaaa tcctgctgag chr20:36087321-36087401 42 8.47e-05 tccatagtaa ttctgaaa tctagctggg chr3:40665839-40665919 46 8.47e-05 tccatagtaa ttctgaaa tcTCACAATA chr18:46253539-46253619 44 8.47e-05 tccatagcag ttctgaaa tccagccagg chr1:214518392-214518472 62 8.47e-05 ctcacaacag ttctgaaa ccaaatgtgt chr3:128442479-128442559 62 8.47e-05 gtcatagtaa ttctgaaa tcagcgaggc chr21:44300621-44300701 47 8.47e-05 tccaaagcaa ttctgaaa tcctactgga chr17:35622508-35622588 42 8.47e-05 tccatagcaa ttctgaaa tccagatagg chr10:4083896-4083976 41 8.47e-05 tccatagcaa ttctgaaa tttcccagga chr11:45060633-45060713 5 1.35e-04 agat ttcaaaat tgctagggac chr20:520594-520674 38 1.35e-04 ccaaagcagt ttcaaaat ctagggaatc chr18:1498398-1498478 56 1.35e-04 caatcttgag ttcaaaat tgttagggcc chr8:98524356-98524436 69 1.35e-04 ttttttctct ttctaaat ggga chr6:144315261-144315341 35 1.35e-04 tttgaaggat ttcaaaat tgttatggac chr1:145046462-145046542 20 1.35e-04 tcagctagat ttcaaaat tgctgtggac chr2:170953708-170953788 34 1.35e-04 ccagccacat ttcaaaat tgctatgaat chr15:69981606-69981686 44 1.35e-04 tctgctggat ttcaaaat tgctatgggc chr21:40097301-40097381 30 1.35e-04 caagtgagat ttcaaaat tgctatggac chr21:30887119-30887199 29 1.35e-04 ccagctagat ttcaaaat tgctatggat chr20:3646632-3646712 15 2.21e-04 tcagccccta ttcaggat ggagttgctc chr3:176723940-176724020 9 2.21e-04 ccctaaat ttcaaaaa tgtaagggaa chr4:184256747-184256827 5 3.08e-04 TCCT TTCTGGAA AGTTCTTTCC chrX:15901551-15901631 70 3.08e-04 ATCATGAGTA TTTTGAAT TAA chr17:48367753-48367833 2 3.08e-04 T TTCAGGAA GAAGTGGGTG chr5:179462717-179462797 48 3.08e-04 ccctctacta ttttgaat ctgctgttga chr2:200766824-200766904 61 3.08e-04 acttttctct ttttgaat ggaagtattt chr1:27132301-27132381 68 3.08e-04 tccaaaacag ttttgaat tccca chr7:101215595-101215675 56 3.60e-04 accttagcag ttttgaaa ttaggaagta chr7:155071656-155071736 35 3.60e-04 ctcttgtttg ttttgaaa ccacatgata chr4:111517746-111517826 54 3.60e-04 tccatagcaa ttttgaaa tctatctagg chr18:20811428-20811508 52 3.60e-04 GCCTTAGCAA TTTAGAAA GTAGAATGAC chr2:203113525-203113605 38 3.60e-04 accacagcaa ttttgaaa tcccactggg chr1:39280275-39280355 42 3.60e-04 CCCAGGGCAG TTTTGAAA TTTGAAAGTT chr11:43740082-43740162 63 3.60e-04 tccatagcaa ttttgaaa ttcatctggg chr5:134495871-134495951 43 3.60e-04 tcccaagcaa ttttgaaa tccagctggg chr19:46830024-46830104 42 3.60e-04 tccatagcag ttttgaaa tccatatggg chr10:13065918-13065998 64 3.60e-04 tccatagcaa ttttgaaa tccagtaag chr12:94356271-94356351 38 3.60e-04 ttcatagcaa ttttgaaa tccagttggg chr15:57100517-57100597 57 3.60e-04 tccacagcaa ttttgaaa tctagctgga chr13:75973446-75973526 28 3.95e-04 ttggctgaat ttcagaac tgctatggac chr6:140026580-140026660 26 3.95e-04 catctattat ttcagaac tgctatggat chr3:15847480-15847560 13 3.95e-04 ATTCATGTCT TTCTGAAC CATATTGGAG chr10:98243105-98243185 66 3.95e-04 ccagcctgat ttcagaac tgttatg chr7:106437353-106437433 3 4.37e-04 ta ttcaagat ggagttgctc chr12:132090139-13209021 6 4.37e-04 ccctg ttcaagat ggagtcattc chr20:46768473-46768553 5 4.37e-04 ccta ttcaagat ggagttgctc chr9:110438200-110438280 45 4.37e-04 ccagccccta ttcaagat ggagtcactc chr15:68193194-68193274 1 4.37e-04 . ttcaagat ggagttgctc chr7:29659630-29659710 15 4.37e-04 ccagccctta ttcaagat ggagttgctg chr14:93042228-93042308 22 4.37e-04 ccaaccccta ttcaagat gggggtcact chr7:123633147-123633227 30 4.37e-04 cccagcccta ttcaagat ggagtcactc chr1:9138439-9138519 36 4.37e-04 tcggtcccta ttcaagat ggagtcgctc chr5:31362407-31362487 18 4.37e-04 ttagggacta ttcaagat ggagtcactc chr1:175379865-175379945 23 4.37e-04 actggcagag ttcaagat ggtggctgct chr7:51397680-51397760 36 4.37e-04 ccagccccta ttcaagat ggagtctctc chr5:173098338-173098418 51 5.40e-04 CCAACACTCG TTCAAGAA GCTGGCTGGT chr16:86698214-86698294 62 5.40e-04 AGTGCAAGAG TTCTAGAA GGTTGTGGGC chr2:43595781-43595861 68 5.40e-04 cCACAGCACT TTTTAAAT CTGTT chr17:47358419-47358499 51 5.40e-04 ccaaagcaat ttttaaat ccagttgagc chr20:23270521-23270601 54 6.45e-04 CCCATAGCAC TTTTAAAA GAGAGCAGAG chr16:87421728-87421808 15 7.30e-04 TACACACTCA TTTAGGAA ACAGCTGCGG chr16:47492401-47492481 26 7.30e-04 TGAATGTAGT TTCAAAAC TGTGTTGGGT chr5:31362606-31362686 31 7.30e-04 aaaaccaagc ttttggaa ttcaatgaca chr21:40097501-40097581 67 7.30e-04 tggatgaaac ttttggaa tcttcc chr2:130588750-130588830 50 7.30e-04 ccagctagat ttcaaaac tgctttggag chr3:115705604-115705684 47 7.30e-04 cccagtggaa ttttggaa ttgctttgga chr10:64873914-64873994 66 7.59e-04 CCGTAGTTGC TTCTGGAC TGAGTGT chr16:58467694-58467774 26 8.02e-04 acaGCTAGGA TTTAGAAC CTGGACCTGG chr10:4084103-4084183 43 8.02e-04 agccatttct ttttgaac tgactctttc chr1:153530511-153530591 42 9.58e-04 ctgactcaat ttcggaat tgctatggac -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTCWGAAW MEME-1 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr12:127388336-12738841 4.2e-05 19_[+1]_53 chr5:2691793-2691873 4.2e-05 54_[+1]_18 chr16:86200179-86200259 4.2e-05 45_[+1]_27 chr5:34505231-34505311 4.2e-05 47_[+1]_25 chr6:15852696-15852776 4.2e-05 30_[+1]_42 chr10:21771909-21771989 4.2e-05 51_[+1]_21 chr1:225054801-225054881 4.2e-05 27_[+1]_45 chr2:152124210-152124290 4.2e-05 22_[+1]_50 chr1:63773026-63773106 4.2e-05 40_[+1]_32 chr2:241284492-241284572 4.2e-05 25_[+1]_47 chr6:44752091-44752171 4.2e-05 15_[+1]_57 chr14:90914217-90914297 4.2e-05 8_[+1]_64 chr11:93052562-93052642 4.2e-05 18_[+1]_54 chr2:113207587-113207667 4.2e-05 27_[+1]_45 chr7:128913936-128914016 4.2e-05 18_[+1]_54 chr3:186987425-186987505 4.2e-05 46_[+1]_26 chr11:69275557-69275637 4.2e-05 28_[+1]_44 chr21:40536586-40536666 4.2e-05 28_[+1]_44 chr2:7894067-7894147 8.5e-05 39_[+1]_33 chr10:33686025-33686105 8.5e-05 30_[+1]_42 chr1:243978179-243978259 8.5e-05 33_[+1]_39 chr7:134832727-134832807 8.5e-05 6_[+1]_66 chr16:54560167-54560247 8.5e-05 40_[+1]_32 chr5:158769022-158769102 8.5e-05 42_[+1]_30 chr1:40489210-40489290 8.5e-05 5_[+1]_67 chr11:116549763-11654984 8.5e-05 43_[+1]_29 chr17:45396061-45396141 8.5e-05 69_[+1]_3 chr7:51043920-51044000 8.5e-05 51_[+1]_21 chr7:93256340-93256420 8.5e-05 42_[+1]_30 chr11:9677685-9677765 8.5e-05 28_[+1]_44 chr1:32997701-32997781 8.5e-05 39_[+1]_33 chr1:115664573-115664653 8.5e-05 59_[+1]_13 chr2:43317614-43317694 8.5e-05 55_[+1]_17 chr6:148376732-148376812 8.5e-05 41_[+1]_31 chr20:36087321-36087401 8.5e-05 41_[+1]_31 chr3:40665839-40665919 8.5e-05 45_[+1]_27 chr18:46253539-46253619 8.5e-05 43_[+1]_29 chr1:214518392-214518472 8.5e-05 61_[+1]_11 chr3:128442479-128442559 8.5e-05 61_[+1]_11 chr21:44300621-44300701 8.5e-05 46_[+1]_26 chr17:35622508-35622588 8.5e-05 41_[+1]_31 chr10:4083896-4083976 8.5e-05 40_[+1]_32 chr11:45060633-45060713 0.00013 4_[+1]_68 chr20:520594-520674 0.00013 37_[+1]_35 chr18:1498398-1498478 0.00013 55_[+1]_17 chr8:98524356-98524436 0.00013 68_[+1]_4 chr6:144315261-144315341 0.00013 34_[+1]_38 chr1:145046462-145046542 0.00013 19_[+1]_53 chr2:170953708-170953788 0.00013 33_[+1]_39 chr15:69981606-69981686 0.00013 43_[+1]_29 chr21:40097301-40097381 0.00013 29_[+1]_43 chr21:30887119-30887199 0.00013 28_[+1]_44 chr20:3646632-3646712 0.00022 14_[+1]_58 chr3:176723940-176724020 0.00022 8_[+1]_64 chr4:184256747-184256827 0.00031 4_[+1]_68 chrX:15901551-15901631 0.00031 69_[+1]_3 chr17:48367753-48367833 0.00031 1_[+1]_71 chr5:179462717-179462797 0.00031 47_[+1]_25 chr2:200766824-200766904 0.00031 60_[+1]_12 chr1:27132301-27132381 0.00031 67_[+1]_5 chr7:101215595-101215675 0.00036 55_[+1]_17 chr7:155071656-155071736 0.00036 34_[+1]_38 chr4:111517746-111517826 0.00036 53_[+1]_19 chr18:20811428-20811508 0.00036 51_[+1]_21 chr2:203113525-203113605 0.00036 37_[+1]_35 chr1:39280275-39280355 0.00036 41_[+1]_31 chr11:43740082-43740162 0.00036 62_[+1]_10 chr5:134495871-134495951 0.00036 42_[+1]_30 chr19:46830024-46830104 0.00036 41_[+1]_31 chr10:13065918-13065998 0.00036 63_[+1]_9 chr12:94356271-94356351 0.00036 37_[+1]_35 chr15:57100517-57100597 0.00036 56_[+1]_16 chr13:75973446-75973526 0.00039 27_[+1]_45 chr6:140026580-140026660 0.00039 25_[+1]_47 chr3:15847480-15847560 0.00039 12_[+1]_60 chr10:98243105-98243185 0.00039 65_[+1]_7 chr7:106437353-106437433 0.00044 2_[+1]_70 chr12:132090139-13209021 0.00044 5_[+1]_67 chr20:46768473-46768553 0.00044 4_[+1]_68 chr9:110438200-110438280 0.00044 44_[+1]_28 chr15:68193194-68193274 0.00044 [+1]_72 chr7:29659630-29659710 0.00044 14_[+1]_58 chr14:93042228-93042308 0.00044 21_[+1]_51 chr7:123633147-123633227 0.00044 29_[+1]_43 chr1:9138439-9138519 0.00044 35_[+1]_37 chr5:31362407-31362487 0.00044 17_[+1]_55 chr1:175379865-175379945 0.00044 22_[+1]_50 chr7:51397680-51397760 0.00044 35_[+1]_37 chr5:173098338-173098418 0.00054 50_[+1]_22 chr16:86698214-86698294 0.00054 61_[+1]_11 chr2:43595781-43595861 0.00054 67_[+1]_5 chr17:47358419-47358499 0.00054 50_[+1]_22 chr20:23270521-23270601 0.00064 53_[+1]_19 chr16:87421728-87421808 0.00073 14_[+1]_58 chr16:47492401-47492481 0.00073 25_[+1]_47 chr5:31362606-31362686 0.00073 30_[+1]_42 chr21:40097501-40097581 0.00073 66_[+1]_6 chr2:130588750-130588830 0.00073 49_[+1]_23 chr3:115705604-115705684 0.00073 46_[+1]_26 chr10:64873914-64873994 0.00076 65_[+1]_7 chr16:58467694-58467774 0.0008 25_[+1]_47 chr10:4084103-4084183 0.0008 42_[+1]_30 chr1:153530511-153530591 0.00096 41_[+1]_31 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTCWGAAW MEME-1 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF TTCWGAAW width=8 seqs=103 chr12:127388336-12738841 ( 20) TTCTGAAT 1 chr5:2691793-2691873 ( 55) TTCAGAAT 1 chr16:86200179-86200259 ( 46) TTCAGAAT 1 chr5:34505231-34505311 ( 48) TTCAGAAT 1 chr6:15852696-15852776 ( 31) TTCAGAAT 1 chr10:21771909-21771989 ( 52) TTCAGAAT 1 chr1:225054801-225054881 ( 28) TTCAGAAT 1 chr2:152124210-152124290 ( 23) TTCAGAAT 1 chr1:63773026-63773106 ( 41) TTCAGAAT 1 chr2:241284492-241284572 ( 26) TTCAGAAT 1 chr6:44752091-44752171 ( 16) TTCAGAAT 1 chr14:90914217-90914297 ( 9) TTCAGAAT 1 chr11:93052562-93052642 ( 19) TTCAGAAT 1 chr2:113207587-113207667 ( 28) TTCAGAAT 1 chr7:128913936-128914016 ( 19) TTCAGAAT 1 chr3:186987425-186987505 ( 47) TTCAGAAT 1 chr11:69275557-69275637 ( 29) TTCAGAAT 1 chr21:40536586-40536666 ( 29) TTCAGAAT 1 chr2:7894067-7894147 ( 40) TTCAGAAA 1 chr10:33686025-33686105 ( 31) TTCTGAAA 1 chr1:243978179-243978259 ( 34) TTCTGAAA 1 chr7:134832727-134832807 ( 7) TTCTGAAA 1 chr16:54560167-54560247 ( 41) TTCTGAAA 1 chr5:158769022-158769102 ( 43) TTCTGAAA 1 chr1:40489210-40489290 ( 6) TTCTGAAA 1 chr11:116549763-11654984 ( 44) TTCTGAAA 1 chr17:45396061-45396141 ( 70) TTCTGAAA 1 chr7:51043920-51044000 ( 52) TTCTGAAA 1 chr7:93256340-93256420 ( 43) TTCTGAAA 1 chr11:9677685-9677765 ( 29) TTCTGAAA 1 chr1:32997701-32997781 ( 40) TTCTGAAA 1 chr1:115664573-115664653 ( 60) TTCTGAAA 1 chr2:43317614-43317694 ( 56) TTCTGAAA 1 chr6:148376732-148376812 ( 42) TTCTGAAA 1 chr20:36087321-36087401 ( 42) TTCTGAAA 1 chr3:40665839-40665919 ( 46) TTCTGAAA 1 chr18:46253539-46253619 ( 44) TTCTGAAA 1 chr1:214518392-214518472 ( 62) TTCTGAAA 1 chr3:128442479-128442559 ( 62) TTCTGAAA 1 chr21:44300621-44300701 ( 47) TTCTGAAA 1 chr17:35622508-35622588 ( 42) TTCTGAAA 1 chr10:4083896-4083976 ( 41) TTCTGAAA 1 chr11:45060633-45060713 ( 5) TTCAAAAT 1 chr20:520594-520674 ( 38) TTCAAAAT 1 chr18:1498398-1498478 ( 56) TTCAAAAT 1 chr8:98524356-98524436 ( 69) TTCTAAAT 1 chr6:144315261-144315341 ( 35) TTCAAAAT 1 chr1:145046462-145046542 ( 20) TTCAAAAT 1 chr2:170953708-170953788 ( 34) TTCAAAAT 1 chr15:69981606-69981686 ( 44) TTCAAAAT 1 chr21:40097301-40097381 ( 30) TTCAAAAT 1 chr21:30887119-30887199 ( 29) TTCAAAAT 1 chr20:3646632-3646712 ( 15) TTCAGGAT 1 chr3:176723940-176724020 ( 9) TTCAAAAA 1 chr4:184256747-184256827 ( 5) TTCTGGAA 1 chrX:15901551-15901631 ( 70) TTTTGAAT 1 chr17:48367753-48367833 ( 2) TTCAGGAA 1 chr5:179462717-179462797 ( 48) TTTTGAAT 1 chr2:200766824-200766904 ( 61) TTTTGAAT 1 chr1:27132301-27132381 ( 68) TTTTGAAT 1 chr7:101215595-101215675 ( 56) TTTTGAAA 1 chr7:155071656-155071736 ( 35) TTTTGAAA 1 chr4:111517746-111517826 ( 54) TTTTGAAA 1 chr18:20811428-20811508 ( 52) TTTAGAAA 1 chr2:203113525-203113605 ( 38) TTTTGAAA 1 chr1:39280275-39280355 ( 42) TTTTGAAA 1 chr11:43740082-43740162 ( 63) TTTTGAAA 1 chr5:134495871-134495951 ( 43) TTTTGAAA 1 chr19:46830024-46830104 ( 42) TTTTGAAA 1 chr10:13065918-13065998 ( 64) TTTTGAAA 1 chr12:94356271-94356351 ( 38) TTTTGAAA 1 chr15:57100517-57100597 ( 57) TTTTGAAA 1 chr13:75973446-75973526 ( 28) TTCAGAAC 1 chr6:140026580-140026660 ( 26) TTCAGAAC 1 chr3:15847480-15847560 ( 13) TTCTGAAC 1 chr10:98243105-98243185 ( 66) TTCAGAAC 1 chr7:106437353-106437433 ( 3) TTCAAGAT 1 chr12:132090139-13209021 ( 6) TTCAAGAT 1 chr20:46768473-46768553 ( 5) TTCAAGAT 1 chr9:110438200-110438280 ( 45) TTCAAGAT 1 chr15:68193194-68193274 ( 1) TTCAAGAT 1 chr7:29659630-29659710 ( 15) TTCAAGAT 1 chr14:93042228-93042308 ( 22) TTCAAGAT 1 chr7:123633147-123633227 ( 30) TTCAAGAT 1 chr1:9138439-9138519 ( 36) TTCAAGAT 1 chr5:31362407-31362487 ( 18) TTCAAGAT 1 chr1:175379865-175379945 ( 23) TTCAAGAT 1 chr7:51397680-51397760 ( 36) TTCAAGAT 1 chr5:173098338-173098418 ( 51) TTCAAGAA 1 chr16:86698214-86698294 ( 62) TTCTAGAA 1 chr2:43595781-43595861 ( 68) TTTTAAAT 1 chr17:47358419-47358499 ( 51) TTTTAAAT 1 chr20:23270521-23270601 ( 54) TTTTAAAA 1 chr16:87421728-87421808 ( 15) TTTAGGAA 1 chr16:47492401-47492481 ( 26) TTCAAAAC 1 chr5:31362606-31362686 ( 31) TTTTGGAA 1 chr21:40097501-40097581 ( 67) TTTTGGAA 1 chr2:130588750-130588830 ( 50) TTCAAAAC 1 chr3:115705604-115705684 ( 47) TTTTGGAA 1 chr10:64873914-64873994 ( 66) TTCTGGAC 1 chr16:58467694-58467774 ( 26) TTTAGAAC 1 chr10:4084103-4084183 ( 43) TTTTGAAC 1 chr1:153530511-153530591 ( 42) TTCGGAAT 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTCWGAAW MEME-1 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 18250 bayes= 8.62213 E= 1.8e-043 -1333 -1333 -1333 187 -1333 -1333 -1333 187 -1333 176 -1333 -17 87 -1333 -457 86 10 -1333 162 -1333 153 -1333 -11 -1333 188 -1333 -1333 -1333 72 -136 -1333 77 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTCWGAAW MEME-1 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 103 E= 1.8e-043 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.757282 0.000000 0.242718 0.495146 0.000000 0.009709 0.495146 0.291262 0.000000 0.708738 0.000000 0.786408 0.000000 0.213592 0.000000 1.000000 0.000000 0.000000 0.000000 0.446602 0.087379 0.000000 0.466019 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTCWGAAW MEME-1 regular expression -------------------------------------------------------------------------------- TT[CT][AT][GA][AG]A[TA] -------------------------------------------------------------------------------- Time 4.74 secs. ******************************************************************************** ******************************************************************************** MOTIF MTGGWYCA MEME-2 width = 8 sites = 109 llr = 778 E-value = 2.8e-040 ******************************************************************************** -------------------------------------------------------------------------------- Motif MTGGWYCA MEME-2 Description -------------------------------------------------------------------------------- Simplified A 3::23::9 pos.-specific C 6:::17a1 probability G ::a81::: matrix T 1a::43:: bits 2.2 * * 1.9 ** * 1.7 ** * 1.5 ** * Relative 1.3 ** ** Entropy 1.1 *** *** (10.3 bits) 0.9 *** *** 0.6 **** *** 0.4 **** *** 0.2 ******** 0.0 -------- Multilevel CTGGTCCA consensus A AT sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif MTGGWYCA MEME-2 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr10:33686025-33686105 17 1.22e-05 ctagcagtaa ctggtcca tagcaattct chr16:54560167-54560247 27 1.22e-05 acagcactca ctggtcca tagcaattct chr7:93256340-93256420 29 1.22e-05 aaaggaataa ctggtcca aagcaattct chr1:32997701-32997781 26 1.22e-05 aaaagaagca ctggtcca tagcaattct chr1:115664573-115664653 46 1.22e-05 atagcagtca ctggtcca tagcaattct chr17:47358419-47358499 36 1.22e-05 ggaaaggtca ctggtcca aagcaatttt chr1:27132301-27132381 54 1.22e-05 gccacagtca ctggtcca aaacagtttt chr2:43317614-43317694 42 1.22e-05 agagccatga ctggtcca tagcaattct chr20:36087321-36087401 28 1.22e-05 agataagtcg ctggtcca tagtaattct chr3:40665839-40665919 32 1.22e-05 ataatagtca ctggtcca tagtaattct chr21:44300621-44300701 33 1.22e-05 acagtaatca ctggtcca aagcaattct chr19:46830024-46830104 28 1.22e-05 gcatatatcc ctggtcca tagcagtttt chr10:13065918-13065998 50 1.22e-05 acagaagtta ctggtcca tagcaatttt chr15:57100517-57100597 43 1.22e-05 acaggattca ctggtcca cagcaatttt chr2:203113525-203113605 24 2.43e-05 acatgggtca ctggacca cagcaatttt chr4:26107510-26107590 34 3.90e-05 AATCTGTGCA ATGGTCCA GTGTCATGGA chr2:12697965-12698045 34 5.39e-05 tggagtcact ctggttca aacgcctgac chr12:132090139-13209021 23 5.39e-05 tggagtcatt ctggttca aatgcctctg chr20:46768473-46768553 22 5.39e-05 tggagttgct ctggttca agtgcctctg chr9:110438200-110438280 62 5.39e-05 tggagtcact ctggttca aacgcctctg chr14:93042228-93042308 40 5.39e-05 gggggtcact ctggttca gacgGACACT chr4:100656053-100656133 9 5.39e-05 gagttagt ctggttca cacacctctg chr4:154458960-154459040 10 5.39e-05 ggagttgct ctggttca aaagcctctg chr17:47154416-47154496 15 5.39e-05 tggagtcgct ctggttca aacaactctg chr5:31362407-31362487 35 5.39e-05 tggagtcact ctggttca aacacctctg chr20:3646632-3646712 32 5.39e-05 tggagttgct ctggttca caggcctctg chr7:51397680-51397760 53 5.39e-05 tggagtctct ctggttca catgcctatg chr17:45396061-45396141 56 5.39e-05 acagaagtca ctggttca tagcaattct chr12:94356271-94356351 24 5.39e-05 acaggagtca ctggttca tagcaatttt chr2:152528957-152529037 34 6.41e-05 TAGCGACATC CTGGGCCA TCTTTGCAGC chr2:7894067-7894147 52 7.88e-05 cagaaatgct atggacca gtgacctcta chr3:143162733-143162813 63 7.88e-05 AAAGCAGGAA ATGGACCA GTGGCTTGGG chr6:142452112-142452192 12 7.88e-05 cagaattgtt atggacca gtgaccgtta chr13:75973446-75973526 40 7.88e-05 cagaactgct atggacca gtacctgttc chr6:144315261-144315341 47 7.88e-05 caaaattgtt atggacca gggactCCCT chr1:225054801-225054881 40 7.88e-05 cagaattgct atggacca ctgactgggc chr2:241284492-241284572 38 7.88e-05 cagaattgct atggacca gtgactgcta chr14:90914217-90914297 21 7.88e-05 cagaattgct atggacca gtgacggcta chr21:40097301-40097381 42 7.88e-05 caaaattgct atggacca gtgactaata chr1:153530511-153530591 54 7.88e-05 cggaattgct atggacca atgcaccaat chr11:93052562-93052642 31 7.88e-05 cagaattgct atggacca gtgattgctt chr2:113207587-113207667 40 7.88e-05 cagaattgct atggacca gtaacacctg chr11:69275557-69275637 41 7.88e-05 cagaattgct atggacca attacatctg chr21:40536586-40536666 41 7.88e-05 cagaattgtt atggacca gtgactgctc chr1:18748639-18748719 28 1.04e-04 gttgttcaag ctggccca gtcaggggcg chr7:51043920-51044000 38 1.04e-04 cacactgtca ctggccca cagcaattct chr12:57771957-57772037 4 1.04e-04 tgt ctggccca cagcaaatct chr7:134832727-134832807 19 1.63e-04 CTGAAAAGTC ATGGGCCA CTGGCAAGTT chr12:32173973-32174053 12 1.63e-04 gagcagtagc atgggcca ctcagccact chr4:111517746-111517826 40 1.63e-04 ataagagtca ctgatcca tagcaatttt chr13:29113321-29113401 61 1.63e-04 CTGTTTTGCT ATGGGCCA AACAAGCAAA chr15:69981606-69981686 56 1.63e-04 caaaattgct atgggcca gtgacttcca chr18:46253539-46253619 30 1.63e-04 atagacattg ttggtcca tagcagttct chr6:44752091-44752171 28 1.63e-04 cagaattgct atgggcca gtgactcctt chr17:35622508-35622588 28 1.63e-04 atagtagtca ttggtcca tagcaattct chr7:128913936-128914016 31 1.63e-04 cagaattgtt atgggcca gtaactgtta chr3:128442479-128442559 48 1.76e-04 acagctgcca ctgggtca tagtaattct chr16:86698214-86698294 33 2.16e-04 CAGGGGTGGG CTGGTCCC CATTGTGTCA chr5:34505231-34505311 60 2.16e-04 cagaattgct atggatca gtaaatgcat chr6:140026580-140026660 38 2.16e-04 cagaactgct atggatca atgacttctg chr5:134495871-134495951 29 2.16e-04 aaaagaatca ctggtccc aagcaatttt chr21:30887119-30887199 41 2.16e-04 caaaattgct atggatca gtgtttgttg chr16:86200179-86200259 58 2.57e-04 cagaattgct ttggacca gtgacaacca chr11:9677685-9677765 15 2.57e-04 taagcagtta ctggctca tagcaattct chr3:115705604-115705684 60 2.57e-04 tggaattgct ttggacca atgactaatg chr10:15669685-15669765 25 2.84e-04 GGTGCAGAAC CTGGACCC TCAGCCTTGG chr17:41430112-41430192 24 3.35e-04 tggagtcgct ttggttca aatgcctcgg chr3:125919572-125919652 44 3.35e-04 ggagaggagc ctgattca aatcaatggc chr1:68327709-68327789 29 3.60e-04 CTACCAACAG CTGAGCCA TCTTGATCTC chr19:2507324-2507404 43 4.28e-04 atccgaggaa aTGAACCA TTATTGCTAC chr15:68193194-68193274 18 4.28e-04 tggagttgct ctggttcc agtgcttcta chr6:31526578-31526658 13 4.28e-04 CTAATAAGAC CTGGTTCC ACATCTCACT chr7:123633147-123633227 47 4.28e-04 tggagtcact ctggttcc aatgcttctg chr1:9138439-9138519 53 4.28e-04 tggagtcgct ctggttcc aatgcctctg chr9:33703586-33703666 41 4.28e-04 tcagagacat atgaacca gagcaactcc chr10:21771909-21771989 64 4.28e-04 cagaattgct atgaacca atgattgct chr5:131793383-131793463 42 5.20e-04 CTGGGGGGGG CTGGGCCC ACCTTGTTGC chr1:243978179-243978259 20 5.20e-04 gtgggagtca ctgaccca tagcaattct chr20:23270521-23270601 40 5.20e-04 TGCTCTAGGA CTGACCCA TAGCACTTTT chr2:20795757-20795837 18 5.20e-04 GTAAAGCAGA GTGGTCCA GAGCTTACCT chr6:18242813-18242893 36 5.20e-04 tcccagaacc ttggccca ttagtcacta chr1:39280275-39280355 28 5.20e-04 GTTTATTAAA TTGGCCCA GGGCAGTTTT chr2:152124210-152124290 35 5.20e-04 cagaattgct ttggccca gtgacggcta chr10:4083896-4083976 27 5.20e-04 atggcagcta ctgctcca tagcaattct chr4:103708686-103708766 18 5.86e-04 tttcttaccc atgattca ccatggtgtg chr16:58467694-58467774 34 5.86e-04 GATTTAGAAC CTGGACCT GGACGCCTCA chr2:241284694-241284774 42 5.86e-04 tgacaagatc ctggacct gagagtcttt chr6:20203930-20204010 10 6.43e-04 accgagctc ctgcacca ggccccaaca chr15:58769656-58769736 20 6.43e-04 TGGACATTCT ATGAGCCA AAGCAATTTT chr2:69064580-69064660 20 6.43e-04 CGGAAGCCTA CTGCACCA GGACGTAGGC chr8:125459576-125459656 33 6.73e-04 cctgaaacat ctgagtca tcctgaagcc chr16:47492401-47492481 38 6.73e-04 CAAAACTGTG TTGGGTCA CTATCATGGA chr11:45060633-45060713 43 7.02e-04 tacatgccta atggtcct tccttgttat chr3:139882166-139882246 65 8.01e-04 cacaaaatgc atgaatca attcttta chr5:168221161-168221241 4 8.01e-04 GCA ATGAATCA GCCTCGTGTG chr22:22378259-22378339 21 8.01e-04 tggagtcact ctggttct aacacctctg chr6:15852696-15852776 43 8.01e-04 cagaattgct atgggccc ctgactactC chr2:170953708-170953788 46 8.01e-04 caaaattgct atgaatca gtgactgctg chr7:29659630-29659710 32 9.12e-04 tggagttgct gtggttca aacacctctg chr11:45479284-45479364 73 9.12e-04 AGCCTCGGGC CTGCTTCA chr18:20048404-20048484 33 9.12e-04 ctttcacaag ttgaacca acaaggtgcc chr15:29965553-29965633 55 9.12e-04 tggagtcgct gtggttca aacacctctg chr1:175379865-175379945 54 9.12e-04 ctctgccagc ctgggcct ctgagtgacc chr1:119506186-119506266 70 9.12e-04 tgaaagcaga ctgggtcc ctg chr3:46649401-46649481 73 9.12e-04 GAAGGGGCTC CTGTTCCA chr16:54560370-54560450 21 9.12e-04 ttcataagaa ttggctca tatttgcagt chr10:91115228-91115308 65 9.12e-04 ttagagacat ttgaacca gagaaact chr11:116549763-11654984 30 9.12e-04 acagaagaca ctgactca tagcaattct chr11:43740082-43740162 49 9.12e-04 attggaagca ctgttcca tagcaatttt -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif MTGGWYCA MEME-2 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr10:33686025-33686105 1.2e-05 16_[+2]_56 chr16:54560167-54560247 1.2e-05 26_[+2]_46 chr7:93256340-93256420 1.2e-05 28_[+2]_44 chr1:32997701-32997781 1.2e-05 25_[+2]_47 chr1:115664573-115664653 1.2e-05 45_[+2]_27 chr17:47358419-47358499 1.2e-05 35_[+2]_37 chr1:27132301-27132381 1.2e-05 53_[+2]_19 chr2:43317614-43317694 1.2e-05 41_[+2]_31 chr20:36087321-36087401 1.2e-05 27_[+2]_45 chr3:40665839-40665919 1.2e-05 31_[+2]_41 chr21:44300621-44300701 1.2e-05 32_[+2]_40 chr19:46830024-46830104 1.2e-05 27_[+2]_45 chr10:13065918-13065998 1.2e-05 49_[+2]_23 chr15:57100517-57100597 1.2e-05 42_[+2]_30 chr2:203113525-203113605 2.4e-05 23_[+2]_49 chr4:26107510-26107590 3.9e-05 33_[+2]_39 chr2:12697965-12698045 5.4e-05 33_[+2]_39 chr12:132090139-13209021 5.4e-05 22_[+2]_50 chr20:46768473-46768553 5.4e-05 21_[+2]_51 chr9:110438200-110438280 5.4e-05 61_[+2]_11 chr14:93042228-93042308 5.4e-05 39_[+2]_33 chr4:100656053-100656133 5.4e-05 8_[+2]_64 chr4:154458960-154459040 5.4e-05 9_[+2]_63 chr17:47154416-47154496 5.4e-05 14_[+2]_58 chr5:31362407-31362487 5.4e-05 34_[+2]_38 chr20:3646632-3646712 5.4e-05 31_[+2]_41 chr7:51397680-51397760 5.4e-05 52_[+2]_20 chr17:45396061-45396141 5.4e-05 55_[+2]_17 chr12:94356271-94356351 5.4e-05 23_[+2]_49 chr2:152528957-152529037 6.4e-05 33_[+2]_39 chr2:7894067-7894147 7.9e-05 51_[+2]_21 chr3:143162733-143162813 7.9e-05 62_[+2]_10 chr6:142452112-142452192 7.9e-05 11_[+2]_61 chr13:75973446-75973526 7.9e-05 39_[+2]_33 chr6:144315261-144315341 7.9e-05 46_[+2]_26 chr1:225054801-225054881 7.9e-05 39_[+2]_33 chr2:241284492-241284572 7.9e-05 37_[+2]_35 chr14:90914217-90914297 7.9e-05 20_[+2]_52 chr21:40097301-40097381 7.9e-05 41_[+2]_31 chr1:153530511-153530591 7.9e-05 53_[+2]_19 chr11:93052562-93052642 7.9e-05 30_[+2]_42 chr2:113207587-113207667 7.9e-05 39_[+2]_33 chr11:69275557-69275637 7.9e-05 40_[+2]_32 chr21:40536586-40536666 7.9e-05 40_[+2]_32 chr1:18748639-18748719 0.0001 27_[+2]_45 chr7:51043920-51044000 0.0001 37_[+2]_35 chr12:57771957-57772037 0.0001 3_[+2]_69 chr7:134832727-134832807 0.00016 18_[+2]_54 chr12:32173973-32174053 0.00016 11_[+2]_61 chr4:111517746-111517826 0.00016 39_[+2]_33 chr13:29113321-29113401 0.00016 60_[+2]_12 chr15:69981606-69981686 0.00016 55_[+2]_17 chr18:46253539-46253619 0.00016 29_[+2]_43 chr6:44752091-44752171 0.00016 27_[+2]_45 chr17:35622508-35622588 0.00016 27_[+2]_45 chr7:128913936-128914016 0.00016 30_[+2]_42 chr3:128442479-128442559 0.00018 47_[+2]_25 chr16:86698214-86698294 0.00022 32_[+2]_40 chr5:34505231-34505311 0.00022 59_[+2]_13 chr6:140026580-140026660 0.00022 37_[+2]_35 chr5:134495871-134495951 0.00022 28_[+2]_44 chr21:30887119-30887199 0.00022 40_[+2]_32 chr16:86200179-86200259 0.00026 57_[+2]_15 chr11:9677685-9677765 0.00026 14_[+2]_58 chr3:115705604-115705684 0.00026 59_[+2]_13 chr10:15669685-15669765 0.00028 24_[+2]_48 chr17:41430112-41430192 0.00034 23_[+2]_49 chr3:125919572-125919652 0.00034 43_[+2]_29 chr1:68327709-68327789 0.00036 28_[+2]_44 chr19:2507324-2507404 0.00043 42_[+2]_30 chr15:68193194-68193274 0.00043 17_[+2]_55 chr6:31526578-31526658 0.00043 12_[+2]_60 chr7:123633147-123633227 0.00043 46_[+2]_26 chr1:9138439-9138519 0.00043 52_[+2]_20 chr9:33703586-33703666 0.00043 40_[+2]_32 chr10:21771909-21771989 0.00043 63_[+2]_9 chr5:131793383-131793463 0.00052 41_[+2]_31 chr1:243978179-243978259 0.00052 19_[+2]_53 chr20:23270521-23270601 0.00052 39_[+2]_33 chr2:20795757-20795837 0.00052 17_[+2]_55 chr6:18242813-18242893 0.00052 35_[+2]_37 chr1:39280275-39280355 0.00052 27_[+2]_45 chr2:152124210-152124290 0.00052 34_[+2]_38 chr10:4083896-4083976 0.00052 26_[+2]_46 chr4:103708686-103708766 0.00059 17_[+2]_55 chr16:58467694-58467774 0.00059 33_[+2]_39 chr2:241284694-241284774 0.00059 41_[+2]_31 chr6:20203930-20204010 0.00064 9_[+2]_63 chr15:58769656-58769736 0.00064 19_[+2]_53 chr2:69064580-69064660 0.00064 19_[+2]_53 chr8:125459576-125459656 0.00067 32_[+2]_40 chr16:47492401-47492481 0.00067 37_[+2]_35 chr11:45060633-45060713 0.0007 42_[+2]_30 chr3:139882166-139882246 0.0008 64_[+2]_8 chr5:168221161-168221241 0.0008 3_[+2]_69 chr22:22378259-22378339 0.0008 20_[+2]_52 chr6:15852696-15852776 0.0008 42_[+2]_30 chr2:170953708-170953788 0.0008 45_[+2]_27 chr7:29659630-29659710 0.00091 31_[+2]_41 chr11:45479284-45479364 0.00091 72_[+2] chr18:20048404-20048484 0.00091 32_[+2]_40 chr15:29965553-29965633 0.00091 54_[+2]_18 chr1:175379865-175379945 0.00091 53_[+2]_19 chr1:119506186-119506266 0.00091 69_[+2]_3 chr3:46649401-46649481 0.00091 72_[+2] chr16:54560370-54560450 0.00091 20_[+2]_52 chr10:91115228-91115308 0.00091 64_[+2]_8 chr11:116549763-11654984 0.00091 29_[+2]_43 chr11:43740082-43740162 0.00091 48_[+2]_24 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif MTGGWYCA MEME-2 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF MTGGWYCA width=8 seqs=109 chr10:33686025-33686105 ( 17) CTGGTCCA 1 chr16:54560167-54560247 ( 27) CTGGTCCA 1 chr7:93256340-93256420 ( 29) CTGGTCCA 1 chr1:32997701-32997781 ( 26) CTGGTCCA 1 chr1:115664573-115664653 ( 46) CTGGTCCA 1 chr17:47358419-47358499 ( 36) CTGGTCCA 1 chr1:27132301-27132381 ( 54) CTGGTCCA 1 chr2:43317614-43317694 ( 42) CTGGTCCA 1 chr20:36087321-36087401 ( 28) CTGGTCCA 1 chr3:40665839-40665919 ( 32) CTGGTCCA 1 chr21:44300621-44300701 ( 33) CTGGTCCA 1 chr19:46830024-46830104 ( 28) CTGGTCCA 1 chr10:13065918-13065998 ( 50) CTGGTCCA 1 chr15:57100517-57100597 ( 43) CTGGTCCA 1 chr2:203113525-203113605 ( 24) CTGGACCA 1 chr4:26107510-26107590 ( 34) ATGGTCCA 1 chr2:12697965-12698045 ( 34) CTGGTTCA 1 chr12:132090139-13209021 ( 23) CTGGTTCA 1 chr20:46768473-46768553 ( 22) CTGGTTCA 1 chr9:110438200-110438280 ( 62) CTGGTTCA 1 chr14:93042228-93042308 ( 40) CTGGTTCA 1 chr4:100656053-100656133 ( 9) CTGGTTCA 1 chr4:154458960-154459040 ( 10) CTGGTTCA 1 chr17:47154416-47154496 ( 15) CTGGTTCA 1 chr5:31362407-31362487 ( 35) CTGGTTCA 1 chr20:3646632-3646712 ( 32) CTGGTTCA 1 chr7:51397680-51397760 ( 53) CTGGTTCA 1 chr17:45396061-45396141 ( 56) CTGGTTCA 1 chr12:94356271-94356351 ( 24) CTGGTTCA 1 chr2:152528957-152529037 ( 34) CTGGGCCA 1 chr2:7894067-7894147 ( 52) ATGGACCA 1 chr3:143162733-143162813 ( 63) ATGGACCA 1 chr6:142452112-142452192 ( 12) ATGGACCA 1 chr13:75973446-75973526 ( 40) ATGGACCA 1 chr6:144315261-144315341 ( 47) ATGGACCA 1 chr1:225054801-225054881 ( 40) ATGGACCA 1 chr2:241284492-241284572 ( 38) ATGGACCA 1 chr14:90914217-90914297 ( 21) ATGGACCA 1 chr21:40097301-40097381 ( 42) ATGGACCA 1 chr1:153530511-153530591 ( 54) ATGGACCA 1 chr11:93052562-93052642 ( 31) ATGGACCA 1 chr2:113207587-113207667 ( 40) ATGGACCA 1 chr11:69275557-69275637 ( 41) ATGGACCA 1 chr21:40536586-40536666 ( 41) ATGGACCA 1 chr1:18748639-18748719 ( 28) CTGGCCCA 1 chr7:51043920-51044000 ( 38) CTGGCCCA 1 chr12:57771957-57772037 ( 4) CTGGCCCA 1 chr7:134832727-134832807 ( 19) ATGGGCCA 1 chr12:32173973-32174053 ( 12) ATGGGCCA 1 chr4:111517746-111517826 ( 40) CTGATCCA 1 chr13:29113321-29113401 ( 61) ATGGGCCA 1 chr15:69981606-69981686 ( 56) ATGGGCCA 1 chr18:46253539-46253619 ( 30) TTGGTCCA 1 chr6:44752091-44752171 ( 28) ATGGGCCA 1 chr17:35622508-35622588 ( 28) TTGGTCCA 1 chr7:128913936-128914016 ( 31) ATGGGCCA 1 chr3:128442479-128442559 ( 48) CTGGGTCA 1 chr16:86698214-86698294 ( 33) CTGGTCCC 1 chr5:34505231-34505311 ( 60) ATGGATCA 1 chr6:140026580-140026660 ( 38) ATGGATCA 1 chr5:134495871-134495951 ( 29) CTGGTCCC 1 chr21:30887119-30887199 ( 41) ATGGATCA 1 chr16:86200179-86200259 ( 58) TTGGACCA 1 chr11:9677685-9677765 ( 15) CTGGCTCA 1 chr3:115705604-115705684 ( 60) TTGGACCA 1 chr10:15669685-15669765 ( 25) CTGGACCC 1 chr17:41430112-41430192 ( 24) TTGGTTCA 1 chr3:125919572-125919652 ( 44) CTGATTCA 1 chr1:68327709-68327789 ( 29) CTGAGCCA 1 chr19:2507324-2507404 ( 43) ATGAACCA 1 chr15:68193194-68193274 ( 18) CTGGTTCC 1 chr6:31526578-31526658 ( 13) CTGGTTCC 1 chr7:123633147-123633227 ( 47) CTGGTTCC 1 chr1:9138439-9138519 ( 53) CTGGTTCC 1 chr9:33703586-33703666 ( 41) ATGAACCA 1 chr10:21771909-21771989 ( 64) ATGAACCA 1 chr5:131793383-131793463 ( 42) CTGGGCCC 1 chr1:243978179-243978259 ( 20) CTGACCCA 1 chr20:23270521-23270601 ( 40) CTGACCCA 1 chr2:20795757-20795837 ( 18) GTGGTCCA 1 chr6:18242813-18242893 ( 36) TTGGCCCA 1 chr1:39280275-39280355 ( 28) TTGGCCCA 1 chr2:152124210-152124290 ( 35) TTGGCCCA 1 chr10:4083896-4083976 ( 27) CTGCTCCA 1 chr4:103708686-103708766 ( 18) ATGATTCA 1 chr16:58467694-58467774 ( 34) CTGGACCT 1 chr2:241284694-241284774 ( 42) CTGGACCT 1 chr6:20203930-20204010 ( 10) CTGCACCA 1 chr15:58769656-58769736 ( 20) ATGAGCCA 1 chr2:69064580-69064660 ( 20) CTGCACCA 1 chr8:125459576-125459656 ( 33) CTGAGTCA 1 chr16:47492401-47492481 ( 38) TTGGGTCA 1 chr11:45060633-45060713 ( 43) ATGGTCCT 1 chr3:139882166-139882246 ( 65) ATGAATCA 1 chr5:168221161-168221241 ( 4) ATGAATCA 1 chr22:22378259-22378339 ( 21) CTGGTTCT 1 chr6:15852696-15852776 ( 43) ATGGGCCC 1 chr2:170953708-170953788 ( 46) ATGAATCA 1 chr7:29659630-29659710 ( 32) GTGGTTCA 1 chr11:45479284-45479364 ( 73) CTGCTTCA 1 chr18:20048404-20048484 ( 33) TTGAACCA 1 chr15:29965553-29965633 ( 55) GTGGTTCA 1 chr1:175379865-175379945 ( 54) CTGGGCCT 1 chr1:119506186-119506266 ( 70) CTGGGTCC 1 chr3:46649401-46649481 ( 73) CTGTTCCA 1 chr16:54560370-54560450 ( 21) TTGGCTCA 1 chr10:91115228-91115308 ( 65) TTGAACCA 1 chr11:116549763-11654984 ( 30) CTGACTCA 1 chr11:43740082-43740162 ( 49) CTGTTCCA 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif MTGGWYCA MEME-2 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 18250 bayes= 8.58504 E= 2.8e-040 20 130 -307 -131 -1341 -1341 -1341 187 -1341 -1341 211 -1341 -80 -261 177 -389 16 -115 -65 72 -1341 156 -1341 31 -1341 216 -1341 -1341 167 -129 -1341 -257 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif MTGGWYCA MEME-2 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 109 E= 2.8e-040 0.311927 0.550459 0.027523 0.110092 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.155963 0.036697 0.788991 0.018349 0.302752 0.100917 0.146789 0.449541 0.000000 0.660550 0.000000 0.339450 0.000000 1.000000 0.000000 0.000000 0.862385 0.091743 0.000000 0.045872 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif MTGGWYCA MEME-2 regular expression -------------------------------------------------------------------------------- [CA]TGG[TA][CT]CA -------------------------------------------------------------------------------- Time 8.23 secs. ******************************************************************************** ******************************************************************************** MOTIF GGAGTYRC MEME-3 width = 8 sites = 28 llr = 262 E-value = 3.6e-009 ******************************************************************************** -------------------------------------------------------------------------------- Motif GGAGTYRC MEME-3 Description -------------------------------------------------------------------------------- Simplified A ::a:::5: pos.-specific C :::::5:a probability G aa:a2:5: matrix T ::::84:: bits 2.2 ** * * 1.9 **** * 1.7 **** * 1.5 **** * Relative 1.3 ***** * Entropy 1.1 ***** ** (13.5 bits) 0.9 ******** 0.6 ******** 0.4 ******** 0.2 ******** 0.0 -------- Multilevel GGAGTCGC consensus TA sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGAGTYRC MEME-3 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr17:41430112-41430192 15 1.06e-05 ccctcaaaat ggagtcgc tttggttcaa chr17:47154416-47154496 6 1.06e-05 aagat ggagtcgc tctggttcaa chr15:29965553-29965633 46 1.06e-05 tactcaagat ggagtcgc tgtggttcaa chr1:9138439-9138519 44 1.06e-05 tattcaagat ggagtcgc tctggttcca chr12:31771241-31771321 22 2.31e-05 aaatcaaaat ggagtcac ccatgctaaa chr2:12697965-12698045 25 2.31e-05 tactcaagat ggagtcac tctggttcaa chr9:110438200-110438280 53 2.31e-05 tattcaagat ggagtcac tctggttcaa chr6:20203930-20204010 47 2.31e-05 aaaccagaat ggagtcac tgatgccagg chr7:123633147-123633227 38 2.31e-05 tattcaagat ggagtcac tctggttcca chr1:89636350-89636430 13 2.31e-05 gaagcaaaat ggagtcac ttatgccaaa chr5:31362407-31362487 26 2.31e-05 tattcaagat ggagtcac tctggttcaa chr22:22378259-22378339 12 2.31e-05 tattcaacat ggagtcac tctggttcta chr10:98243305-98243385 42 2.31e-05 tggatgaaga ggagtcac atcctgactt chr7:106437353-106437433 11 3.60e-05 tattcaagat ggagttgc tccagttcac chr12:127388129-12738820 11 3.60e-05 tgtttaagat ggagttgc tcaggttcaa chr20:46768473-46768553 13 3.60e-05 tattcaagat ggagttgc tctggttcaa chr15:68193194-68193274 9 3.60e-05 ttcaagat ggagttgc tctggttcca chr7:29659630-29659710 23 3.60e-05 tattcaagat ggagttgc tgtggttcaa chr4:154458960-154459040 1 3.60e-05 . ggagttgc tctggttcaa chrX:15901551-15901631 28 3.60e-05 tattcaagat ggagttgc tctggtttga chr20:3646632-3646712 23 3.60e-05 tattcaggat ggagttgc tctggttcac chr2:11262755-11262835 6 3.60e-05 aagat ggagttgc tctggtttac chr7:155071656-155071736 56 7.08e-05 catgataggg ggaggcac ttcagagctt chr2:43317614-43317694 24 7.08e-05 agaggggaga ggaggcac agagccatga chr16:87840646-87840726 29 8.17e-05 GGATGGGAAT GGAGGTGC CCCGGGGGCT chr2:86055994-86056074 28 9.46e-05 ATGACAACAT GGAGGTAC CCATAAAGCC chr17:35622508-35622588 10 9.46e-05 gaggaaata ggaggtac atagtagtca chr2:69064580-69064660 40 1.06e-04 ACGTAGGCCT GGAGTGGC CCTTAACGCA -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGAGTYRC MEME-3 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr17:41430112-41430192 1.1e-05 14_[+3]_58 chr17:47154416-47154496 1.1e-05 5_[+3]_67 chr15:29965553-29965633 1.1e-05 45_[+3]_27 chr1:9138439-9138519 1.1e-05 43_[+3]_29 chr12:31771241-31771321 2.3e-05 21_[+3]_51 chr2:12697965-12698045 2.3e-05 24_[+3]_48 chr9:110438200-110438280 2.3e-05 52_[+3]_20 chr6:20203930-20204010 2.3e-05 46_[+3]_26 chr7:123633147-123633227 2.3e-05 37_[+3]_35 chr1:89636350-89636430 2.3e-05 12_[+3]_60 chr5:31362407-31362487 2.3e-05 25_[+3]_47 chr22:22378259-22378339 2.3e-05 11_[+3]_61 chr10:98243305-98243385 2.3e-05 41_[+3]_31 chr7:106437353-106437433 3.6e-05 10_[+3]_62 chr12:127388129-12738820 3.6e-05 10_[+3]_62 chr20:46768473-46768553 3.6e-05 12_[+3]_60 chr15:68193194-68193274 3.6e-05 8_[+3]_64 chr7:29659630-29659710 3.6e-05 22_[+3]_50 chr4:154458960-154459040 3.6e-05 [+3]_72 chrX:15901551-15901631 3.6e-05 27_[+3]_45 chr20:3646632-3646712 3.6e-05 22_[+3]_50 chr2:11262755-11262835 3.6e-05 5_[+3]_67 chr7:155071656-155071736 7.1e-05 55_[+3]_17 chr2:43317614-43317694 7.1e-05 23_[+3]_49 chr16:87840646-87840726 8.2e-05 28_[+3]_44 chr2:86055994-86056074 9.5e-05 27_[+3]_45 chr17:35622508-35622588 9.5e-05 9_[+3]_63 chr2:69064580-69064660 0.00011 39_[+3]_33 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGAGTYRC MEME-3 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF GGAGTYRC width=8 seqs=28 chr17:41430112-41430192 ( 15) GGAGTCGC 1 chr17:47154416-47154496 ( 6) GGAGTCGC 1 chr15:29965553-29965633 ( 46) GGAGTCGC 1 chr1:9138439-9138519 ( 44) GGAGTCGC 1 chr12:31771241-31771321 ( 22) GGAGTCAC 1 chr2:12697965-12698045 ( 25) GGAGTCAC 1 chr9:110438200-110438280 ( 53) GGAGTCAC 1 chr6:20203930-20204010 ( 47) GGAGTCAC 1 chr7:123633147-123633227 ( 38) GGAGTCAC 1 chr1:89636350-89636430 ( 13) GGAGTCAC 1 chr5:31362407-31362487 ( 26) GGAGTCAC 1 chr22:22378259-22378339 ( 12) GGAGTCAC 1 chr10:98243305-98243385 ( 42) GGAGTCAC 1 chr7:106437353-106437433 ( 11) GGAGTTGC 1 chr12:127388129-12738820 ( 11) GGAGTTGC 1 chr20:46768473-46768553 ( 13) GGAGTTGC 1 chr15:68193194-68193274 ( 9) GGAGTTGC 1 chr7:29659630-29659710 ( 23) GGAGTTGC 1 chr4:154458960-154459040 ( 1) GGAGTTGC 1 chrX:15901551-15901631 ( 28) GGAGTTGC 1 chr20:3646632-3646712 ( 23) GGAGTTGC 1 chr2:11262755-11262835 ( 6) GGAGTTGC 1 chr7:155071656-155071736 ( 56) GGAGGCAC 1 chr2:43317614-43317694 ( 24) GGAGGCAC 1 chr16:87840646-87840726 ( 29) GGAGGTGC 1 chr2:86055994-86056074 ( 28) GGAGGTAC 1 chr17:35622508-35622588 ( 10) GGAGGTAC 1 chr2:69064580-69064660 ( 40) GGAGTGGC 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGAGTYRC MEME-3 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 18250 bayes= 9.18967 E= 3.6e-009 -1145 -1145 211 -1145 -1145 -1145 211 -1145 188 -1145 -1145 -1145 -1145 -1145 211 -1145 -1145 -1145 -37 159 -1145 126 -269 65 77 -1145 121 -1145 -1145 216 -1145 -1145 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGAGTYRC MEME-3 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 28 E= 3.6e-009 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.178571 0.821429 0.000000 0.535714 0.035714 0.428571 0.464286 0.000000 0.535714 0.000000 0.000000 1.000000 0.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGAGTYRC MEME-3 regular expression -------------------------------------------------------------------------------- GGAGT[CT][GA]C -------------------------------------------------------------------------------- Time 11.51 secs. ******************************************************************************** ******************************************************************************** MOTIF CCTCTGAC MEME-4 width = 8 sites = 19 llr = 191 E-value = 1.7e-006 ******************************************************************************** -------------------------------------------------------------------------------- Motif CCTCTGAC MEME-4 Description -------------------------------------------------------------------------------- Simplified A ::::::91 pos.-specific C a9:a:119 probability G :::::91: matrix T :1a:a::: bits 2.2 * * 1.9 * *** 1.7 ****** * 1.5 ****** * Relative 1.3 ******** Entropy 1.1 ******** (14.5 bits) 0.9 ******** 0.6 ******** 0.4 ******** 0.2 ******** 0.0 -------- Multilevel CCTCTGAC consensus sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CCTCTGAC MEME-4 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr12:132090139-13209021 35 1.18e-05 ggttcaaatg cctctgac aCTTCCCTCA chr20:46768473-46768553 34 1.18e-05 ggttcaagtg cctctgac aatcatgggg chr4:100656053-100656133 21 1.18e-05 ggttcacaca cctctgac aGTGTTCTTC chr4:154458960-154459040 22 1.18e-05 ggttcaaaag cctctgac aAACCTGTAG chrX:15901551-15901631 49 1.18e-05 ggtttgattg cctctgac aGTATCATGA chr15:29965553-29965633 67 1.18e-05 ggttcaaaca cctctgac aaaatc chr1:9138439-9138519 65 1.18e-05 ggttccaatg cctctgac aggaggcg chr5:31362407-31362487 47 1.18e-05 ggttcaaaca cctctgac aCTTCCACTC chr22:22378259-22378339 33 1.18e-05 ggttctaaca cctctgac TTAGGGTGGC chr20:3646632-3646712 44 1.18e-05 ggttcacagg cctctgac aCATCCTCTT chr15:60314165-60314245 30 1.18e-05 agttcaaatg cctctgac aCAACCAATT chr2:11262755-11262835 27 1.18e-05 ggtttacatg cctctgac aTGAGCATGT chr7:29659630-29659710 44 4.05e-05 ggttcaaaca cctctgaA AATGGGATCT chr7:123633147-123633227 59 4.05e-05 ggttccaatg cttctgac aGCAGTAGAG chr7:128543358-128543438 30 4.05e-05 cggtctcctt cctctgaa ttcgcacact chr1:214518392-214518472 24 4.05e-05 TCTAATCCCA CTTCTGAC ACCAATATGA chr8:94886456-94886536 12 6.02e-05 agttcagatg cctctggc ataactaccc chr2:69064580-69064660 3 6.02e-05 GC CCTCTGCC GGAAGCCTAC chr3:45147730-45147810 38 7.16e-05 CTGGCTGGTG CCTCTCAC AGCTTTCTCC -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CCTCTGAC MEME-4 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr12:132090139-13209021 1.2e-05 34_[+4]_38 chr20:46768473-46768553 1.2e-05 33_[+4]_39 chr4:100656053-100656133 1.2e-05 20_[+4]_52 chr4:154458960-154459040 1.2e-05 21_[+4]_51 chrX:15901551-15901631 1.2e-05 48_[+4]_24 chr15:29965553-29965633 1.2e-05 66_[+4]_6 chr1:9138439-9138519 1.2e-05 64_[+4]_8 chr5:31362407-31362487 1.2e-05 46_[+4]_26 chr22:22378259-22378339 1.2e-05 32_[+4]_40 chr20:3646632-3646712 1.2e-05 43_[+4]_29 chr15:60314165-60314245 1.2e-05 29_[+4]_43 chr2:11262755-11262835 1.2e-05 26_[+4]_46 chr7:29659630-29659710 4e-05 43_[+4]_29 chr7:123633147-123633227 4e-05 58_[+4]_14 chr7:128543358-128543438 4e-05 29_[+4]_43 chr1:214518392-214518472 4e-05 23_[+4]_49 chr8:94886456-94886536 6e-05 11_[+4]_61 chr2:69064580-69064660 6e-05 2_[+4]_70 chr3:45147730-45147810 7.2e-05 37_[+4]_35 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CCTCTGAC MEME-4 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF CCTCTGAC width=8 seqs=19 chr12:132090139-13209021 ( 35) CCTCTGAC 1 chr20:46768473-46768553 ( 34) CCTCTGAC 1 chr4:100656053-100656133 ( 21) CCTCTGAC 1 chr4:154458960-154459040 ( 22) CCTCTGAC 1 chrX:15901551-15901631 ( 49) CCTCTGAC 1 chr15:29965553-29965633 ( 67) CCTCTGAC 1 chr1:9138439-9138519 ( 65) CCTCTGAC 1 chr5:31362407-31362487 ( 47) CCTCTGAC 1 chr22:22378259-22378339 ( 33) CCTCTGAC 1 chr20:3646632-3646712 ( 44) CCTCTGAC 1 chr15:60314165-60314245 ( 30) CCTCTGAC 1 chr2:11262755-11262835 ( 27) CCTCTGAC 1 chr7:29659630-29659710 ( 44) CCTCTGAA 1 chr7:123633147-123633227 ( 59) CTTCTGAC 1 chr7:128543358-128543438 ( 30) CCTCTGAA 1 chr1:214518392-214518472 ( 24) CTTCTGAC 1 chr8:94886456-94886536 ( 12) CCTCTGGC 1 chr2:69064580-69064660 ( 3) CCTCTGCC 1 chr3:45147730-45147810 ( 38) CCTCTCAC 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CCTCTGAC MEME-4 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 18250 bayes= 10.8043 E= 1.7e-006 -1089 216 -1089 -1089 -1089 200 -1089 -137 -1089 -1089 -1089 187 -1089 216 -1089 -1089 -1089 -1089 -1089 187 -1089 -209 204 -1089 172 -209 -213 -1089 -137 200 -1089 -1089 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CCTCTGAC MEME-4 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 19 E= 1.7e-006 0.000000 1.000000 0.000000 0.000000 0.000000 0.894737 0.000000 0.105263 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.052632 0.947368 0.000000 0.894737 0.052632 0.052632 0.000000 0.105263 0.894737 0.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CCTCTGAC MEME-4 regular expression -------------------------------------------------------------------------------- CCTCTGAC -------------------------------------------------------------------------------- Time 14.75 secs. ******************************************************************************** ******************************************************************************** MOTIF GTGACTCC MEME-5 width = 8 sites = 28 llr = 246 E-value = 9.7e-003 ******************************************************************************** -------------------------------------------------------------------------------- Motif GTGACTCC MEME-5 Description -------------------------------------------------------------------------------- Simplified A :::6:::1 pos.-specific C 1::39:89 probability G 9:a:::2: matrix T :9:11a:: bits 2.2 * 1.9 * * 1.7 * * ** * 1.5 *** **** Relative 1.3 *** **** Entropy 1.1 *** **** (12.7 bits) 0.9 *** **** 0.6 ******** 0.4 ******** 0.2 ******** 0.0 -------- Multilevel GTGACTCC consensus C sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GTGACTCC MEME-5 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr1:18748639-18748719 57 1.22e-05 ttgaacaaga gtgactcc atcttgaata chr1:181143023-181143103 72 1.22e-05 tggaaccaga gtgactcc a chr3:43128323-43128403 5 1.22e-05 AGAG GTGACTCC CACTCAGGCA chr4:57567012-57567092 37 1.22e-05 tctaaccaaa gtgactcc atctttaata chr3:125919572-125919652 1 1.22e-05 . gtgactcc atattggctt chr2:130588750-130588830 70 1.22e-05 ctttggagca gtgactcc ttt chr6:44752091-44752171 36 1.22e-05 ctatgggcca gtgactcc tttgtacctc chr1:40489210-40489290 53 2.22e-05 tgactgttat gtgcctcc tgttcatccc chr1:225054801-225054881 62 2.22e-05 ctgggctatt gtgcctcc ttttgctccc chr21:40097301-40097381 61 2.22e-05 tgactaatat gtgcctcc cattcttctc chr2:113207587-113207667 59 2.22e-05 taacacctgt gtgcctcc tatttgcccc chr6:31526578-31526658 35 3.44e-05 CTCACTCCCA GTGTCTCC TCTGTCTTTT chr2:152124210-152124290 54 3.44e-05 tgacggctat gtgtctcc cattctttcc chr7:128913936-128914016 50 3.44e-05 taactgttat gtgtctcc tgttccttct chr2:170953708-170953788 54 4.69e-05 ctatgaatca gtgactgc tgtgtttaat chr2:241284492-241284572 46 4.69e-05 ctatggacca gtgactgc tatgggcctc chr21:40536586-40536666 49 4.69e-05 ttatggacca gtgactgc tctatgtgtt chr7:128543358-128543438 53 5.72e-05 acactagctg gtgcctgc ttctattcct chr12:132090139-13209021 71 7.21e-05 CCTGGAGAGG GTGATTCC CT chr17:35622712-35622792 4 8.38e-05 ctc ctgactcc actctctgag chr4:71579819-71579899 58 8.38e-05 tgtgagcatg ctgactcc agagtccaca chr11:20000348-20000428 72 9.86e-05 GCTTCTGAAG GTGACTCA C chr20:33893579-33893659 66 9.86e-05 AAGCAAAGGT GTGACTCA TGGCACA chr3:115705814-115705894 65 1.11e-04 ggaactggag gtgtctgc agttactg chr6:144315261-144315341 55 1.34e-04 ttatggacca gggactCC CTAAAGTATA chr10:4083896-4083976 68 1.34e-04 acgcatactg gtgcttcc ttaag chr7:115838961-115839041 57 1.34e-04 tgactgttac gtgcttcc tgttttacca chr17:47154416-47154496 59 1.56e-04 AAGGATTCAT GAGACTCC ATGCAGTACA -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GTGACTCC MEME-5 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr1:18748639-18748719 1.2e-05 56_[+5]_16 chr1:181143023-181143103 1.2e-05 71_[+5]_1 chr3:43128323-43128403 1.2e-05 4_[+5]_68 chr4:57567012-57567092 1.2e-05 36_[+5]_36 chr3:125919572-125919652 1.2e-05 [+5]_72 chr2:130588750-130588830 1.2e-05 69_[+5]_3 chr6:44752091-44752171 1.2e-05 35_[+5]_37 chr1:40489210-40489290 2.2e-05 52_[+5]_20 chr1:225054801-225054881 2.2e-05 61_[+5]_11 chr21:40097301-40097381 2.2e-05 60_[+5]_12 chr2:113207587-113207667 2.2e-05 58_[+5]_14 chr6:31526578-31526658 3.4e-05 34_[+5]_38 chr2:152124210-152124290 3.4e-05 53_[+5]_19 chr7:128913936-128914016 3.4e-05 49_[+5]_23 chr2:170953708-170953788 4.7e-05 53_[+5]_19 chr2:241284492-241284572 4.7e-05 45_[+5]_27 chr21:40536586-40536666 4.7e-05 48_[+5]_24 chr7:128543358-128543438 5.7e-05 52_[+5]_20 chr12:132090139-13209021 7.2e-05 70_[+5]_2 chr17:35622712-35622792 8.4e-05 3_[+5]_69 chr4:71579819-71579899 8.4e-05 57_[+5]_15 chr11:20000348-20000428 9.9e-05 71_[+5]_1 chr20:33893579-33893659 9.9e-05 65_[+5]_7 chr3:115705814-115705894 0.00011 64_[+5]_8 chr6:144315261-144315341 0.00013 54_[+5]_18 chr10:4083896-4083976 0.00013 67_[+5]_5 chr7:115838961-115839041 0.00013 56_[+5]_16 chr17:47154416-47154496 0.00016 58_[+5]_14 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GTGACTCC MEME-5 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF GTGACTCC width=8 seqs=28 chr1:18748639-18748719 ( 57) GTGACTCC 1 chr1:181143023-181143103 ( 72) GTGACTCC 1 chr3:43128323-43128403 ( 5) GTGACTCC 1 chr4:57567012-57567092 ( 37) GTGACTCC 1 chr3:125919572-125919652 ( 1) GTGACTCC 1 chr2:130588750-130588830 ( 70) GTGACTCC 1 chr6:44752091-44752171 ( 36) GTGACTCC 1 chr1:40489210-40489290 ( 53) GTGCCTCC 1 chr1:225054801-225054881 ( 62) GTGCCTCC 1 chr21:40097301-40097381 ( 61) GTGCCTCC 1 chr2:113207587-113207667 ( 59) GTGCCTCC 1 chr6:31526578-31526658 ( 35) GTGTCTCC 1 chr2:152124210-152124290 ( 54) GTGTCTCC 1 chr7:128913936-128914016 ( 50) GTGTCTCC 1 chr2:170953708-170953788 ( 54) GTGACTGC 1 chr2:241284492-241284572 ( 46) GTGACTGC 1 chr21:40536586-40536666 ( 49) GTGACTGC 1 chr7:128543358-128543438 ( 53) GTGCCTGC 1 chr12:132090139-13209021 ( 71) GTGATTCC 1 chr17:35622712-35622792 ( 4) CTGACTCC 1 chr4:71579819-71579899 ( 58) CTGACTCC 1 chr11:20000348-20000428 ( 72) GTGACTCA 1 chr20:33893579-33893659 ( 66) GTGACTCA 1 chr3:115705814-115705894 ( 65) GTGTCTGC 1 chr6:144315261-144315341 ( 55) GGGACTCC 1 chr10:4083896-4083976 ( 68) GTGCTTCC 1 chr7:115838961-115839041 ( 57) GTGCTTCC 1 chr17:47154416-47154496 ( 59) GAGACTCC 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GTGACTCC MEME-5 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 18250 bayes= 9.18967 E= 9.7e-003 -1145 -165 201 -1145 -292 -1145 -269 177 -1145 -1145 211 -1145 116 16 -1145 -93 -1145 199 -1145 -135 -1145 -1145 -1145 187 -1145 187 -37 -1145 -193 205 -1145 -1145 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GTGACTCC MEME-5 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 28 E= 9.7e-003 0.000000 0.071429 0.928571 0.000000 0.035714 0.000000 0.035714 0.928571 0.000000 0.000000 1.000000 0.000000 0.607143 0.250000 0.000000 0.142857 0.000000 0.892857 0.000000 0.107143 0.000000 0.000000 0.000000 1.000000 0.000000 0.821429 0.178571 0.000000 0.071429 0.928571 0.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GTGACTCC MEME-5 regular expression -------------------------------------------------------------------------------- GTG[AC]CTCC -------------------------------------------------------------------------------- Time 17.98 secs. ******************************************************************************** ******************************************************************************** SUMMARY OF MOTIFS ******************************************************************************** -------------------------------------------------------------------------------- Combined block diagrams: non-overlapping sites with p-value < 0.0001 -------------------------------------------------------------------------------- SEQUENCE NAME COMBINED P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr7:115838961-115839041 3.38e-02 80 chr15:57100517-57100597 1.38e-03 42_[+2(1.22e-05)]_30 chr21:40536586-40536666 5.86e-05 28_[+1(4.25e-05)]_4_[+2(7.88e-05)]_\ [+5(4.69e-05)]_24 chr11:69275557-69275637 4.45e-03 28_[+1(4.25e-05)]_4_[+2(7.88e-05)]_\ 32 chr3:186987425-186987505 7.99e-03 46_[+1(4.25e-05)]_26 chr7:128913936-128914016 1.35e-05 18_[+1(4.25e-05)]_23_[+5(3.44e-05)]_\ 23 chr21:30887119-30887199 3.35e-02 80 chr2:113207587-113207667 6.12e-05 27_[+1(4.25e-05)]_4_[+2(7.88e-05)]_\ 11_[+5(2.22e-05)]_14 chr10:4083896-4083976 4.60e-04 40_[+1(8.47e-05)]_32 chr11:93052562-93052642 3.39e-04 18_[+1(4.25e-05)]_4_[+2(7.88e-05)]_\ 42 chr1:153530511-153530591 8.51e-04 53_[+2(7.88e-05)]_19 chr21:40097301-40097381 1.24e-05 41_[+2(7.88e-05)]_11_[+5(2.22e-05)]_\ 12 chr17:35622508-35622588 3.44e-05 9_[+3(9.46e-05)]_24_[+1(8.47e-05)]_\ 31 chr14:90914217-90914297 4.00e-04 8_[+1(4.25e-05)]_4_[+2(7.88e-05)]_\ 52 chr6:44752091-44752171 1.73e-05 15_[+1(4.25e-05)]_12_[+5(1.22e-05)]_\ 37 chr12:94356271-94356351 3.00e-04 16_[+3(2.31e-05)]_56 chr10:13065918-13065998 6.71e-04 49_[+2(1.22e-05)]_23 chr19:46830024-46830104 2.33e-03 27_[+2(1.22e-05)]_45 chr2:241284492-241284572 2.39e-05 25_[+1(4.25e-05)]_4_[+2(7.88e-05)]_\ [+5(4.69e-05)]_27 chr3:115705604-115705684 1.28e-02 80 chr10:98243105-98243185 1.71e-02 80 chr1:63773026-63773106 7.28e-02 40_[+1(4.25e-05)]_32 chr2:152124210-152124290 9.29e-05 22_[+1(4.25e-05)]_23_[+5(3.44e-05)]_\ 19 chr21:44300621-44300701 4.79e-05 32_[+2(1.22e-05)]_6_[+1(8.47e-05)]_\ 26 chr1:225054801-225054881 4.09e-06 27_[+1(4.25e-05)]_4_[+2(7.88e-05)]_\ 14_[+5(2.22e-05)]_11 chr5:134495871-134495951 5.38e-02 80 chr3:128442479-128442559 2.07e-03 61_[+1(8.47e-05)]_11 chr11:43740082-43740162 4.15e-02 80 chr1:214518392-214518472 7.10e-04 23_[+4(4.05e-05)]_30_[+1(8.47e-05)]_\ 11 chr18:46253539-46253619 4.19e-03 43_[+1(8.47e-05)]_29 chr15:69981606-69981686 3.54e-03 80 chr3:40665839-40665919 8.11e-04 31_[+2(1.22e-05)]_6_[+1(8.47e-05)]_\ 27 chr11:69275785-69275865 6.16e-01 80 chr2:170953708-170953788 5.22e-04 53_[+5(4.69e-05)]_19 chr21:30887327-30887407 3.34e-02 80 chr1:145046462-145046542 1.39e-02 80 chr13:29113321-29113401 3.44e-01 80 chr18:46253754-46253834 9.59e-01 80 chr20:36087321-36087401 2.72e-04 27_[+2(1.22e-05)]_6_[+1(8.47e-05)]_\ 31 chr1:39280275-39280355 5.69e-03 80 chr6:148376732-148376812 2.68e-02 41_[+1(8.47e-05)]_31 chr2:130588750-130588830 6.78e-04 69_[+5(1.22e-05)]_3 chr10:21771909-21771989 9.28e-03 51_[+1(4.25e-05)]_21 chr2:43317614-43317694 1.94e-05 23_[+3(7.08e-05)]_10_[+2(1.22e-05)]_\ 6_[+1(8.47e-05)]_17 chr1:27132301-27132381 3.17e-03 53_[+2(1.22e-05)]_19 chr17:47358419-47358499 1.31e-02 10_[+2(1.22e-05)]_17_[+2(1.22e-05)]_\ 37 chr2:241284694-241284774 8.51e-02 80 chr2:203113525-203113605 3.07e-03 23_[+2(2.43e-05)]_49 chr19:46830224-46830304 2.52e-01 80 chr12:57771957-57772037 7.01e-02 80 chr1:115664573-115664653 1.48e-04 45_[+2(1.22e-05)]_6_[+1(8.47e-05)]_\ 13 chr1:32997701-32997781 8.75e-04 25_[+2(1.22e-05)]_6_[+1(8.47e-05)]_\ 33 chr11:9677685-9677765 1.18e-03 28_[+1(8.47e-05)]_44 chr18:20811428-20811508 1.77e-01 80 chr7:93256340-93256420 4.78e-04 28_[+2(1.22e-05)]_6_[+1(8.47e-05)]_\ 30 chr6:144315261-144315341 1.65e-04 46_[+2(7.88e-05)]_26 chr7:51043920-51044000 1.04e-03 51_[+1(8.47e-05)]_21 chr17:45396061-45396141 1.89e-04 55_[+2(5.39e-05)]_6_[+1(8.47e-05)]_\ 3 chr2:200766824-200766904 2.73e-01 80 chr10:98243305-98243385 4.40e-02 41_[+3(2.31e-05)]_31 chr17:62368802-62368882 3.55e-01 80 chr3:15847480-15847560 6.33e-03 80 chr6:15852696-15852776 5.55e-04 30_[+1(4.25e-05)]_42 chr6:140026580-140026660 3.89e-03 80 chr1:214518597-214518677 2.01e-01 80 chr1:39280476-39280556 1.40e-01 80 chr3:40666038-40666118 1.43e-01 80 chr7:134149366-134149446 8.87e-01 80 chr3:176723940-176724020 2.31e-01 80 chr14:90914418-90914498 5.93e-01 80 chr8:98524356-98524436 2.08e-02 80 chr13:75973446-75973526 2.82e-02 39_[+2(7.88e-05)]_33 chr15:56332414-56332494 2.23e-01 80 chr5:34505231-34505311 5.67e-03 47_[+1(4.25e-05)]_25 chr11:116549763-11654984 8.35e-04 43_[+1(8.47e-05)]_29 chr18:1498398-1498478 2.48e-01 80 chr5:179462717-179462797 1.77e-01 80 chr10:4084103-4084183 1.67e-01 80 chr7:51397680-51397760 1.13e-04 52_[+2(5.39e-05)]_20 chr2:20795522-20795602 9.49e-01 80 chr20:520594-520674 7.16e-03 80 chr4:111517746-111517826 5.67e-03 80 chr2:102875203-102875283 1.67e-01 80 chr2:170953914-170953994 6.11e-01 80 chr11:93052765-93052845 4.48e-01 80 chr2:11262755-11262835 1.14e-03 5_[+3(3.60e-05)]_13_[+4(1.18e-05)]_\ 46 chr4:26107510-26107590 1.18e-01 33_[+2(3.90e-05)]_39 chr7:155071656-155071736 1.05e-02 55_[+3(7.08e-05)]_17 chr6:142452112-142452192 2.65e-02 11_[+2(7.88e-05)]_61 chr10:91115228-91115308 5.62e-01 80 chr6:18242813-18242893 2.62e-01 80 chr7:101215595-101215675 4.03e-01 80 chr1:40489210-40489290 3.68e-04 5_[+1(8.47e-05)]_8_[+1(4.25e-05)]_\ 23_[+5(2.22e-05)]_20 chr17:47358618-47358698 9.38e-02 80 chr7:128543358-128543438 5.08e-04 29_[+4(4.05e-05)]_15_[+5(5.72e-05)]_\ 20 chr1:224742412-224742492 4.34e-01 80 chr1:68327709-68327789 3.59e-01 80 chr5:158769022-158769102 2.00e-03 42_[+1(8.47e-05)]_30 chr2:69064580-69064660 3.08e-04 2_[+4(6.02e-05)]_70 chr15:60314165-60314245 1.93e-03 29_[+4(1.18e-05)]_43 chr16:54560370-54560450 6.82e-02 80 chr16:54560167-54560247 3.05e-04 26_[+2(1.22e-05)]_6_[+1(8.47e-05)]_\ 32 chr12:124712850-12471293 4.43e-01 80 chr12:32173973-32174053 5.00e-02 80 chr7:120777917-120777997 8.17e-01 80 chr17:72459871-72459951 3.41e-01 80 chr8:54758741-54758821 1.96e-02 80 chr7:134832727-134832807 5.03e-03 6_[+1(8.47e-05)]_66 chr16:86200179-86200259 1.80e-03 45_[+1(4.25e-05)]_27 chr1:63773229-63773309 1.03e-01 80 chr7:105985508-105985588 1.81e-01 80 chr20:3646632-3646712 9.31e-07 22_[+3(3.60e-05)]_1_[+2(5.39e-05)]_\ 4_[+4(1.18e-05)]_29 chr10:21388570-21388650 2.58e-01 80 chr11:19195657-19195737 7.17e-01 80 chr1:160520605-160520685 9.91e-03 80 chr2:122003633-122003713 4.54e-01 80 chr22:22378259-22378339 1.82e-05 11_[+3(2.31e-05)]_13_[+4(1.18e-05)]_\ 19_[+3(8.17e-05)]_13 chr9:33703586-33703666 3.47e-01 80 chr1:26663818-26663898 6.02e-01 80 chr8:28982908-28982988 5.01e-01 80 chr17:72459669-72459749 1.97e-02 80 chr7:24818381-24818461 5.53e-01 80 chr22:22378471-22378551 3.39e-01 80 chr12:53000785-53000865 7.90e-01 80 chr1:224742612-224742692 8.22e-01 80 chr3:46649401-46649481 7.96e-02 80 chr5:2691793-2691873 9.03e-03 54_[+1(4.25e-05)]_18 chr9:139098892-139098972 5.33e-01 80 chr2:20795757-20795837 1.86e-01 80 chr8:98524558-98524638 2.28e-01 80 chr20:23270521-23270601 1.55e-02 80 chr6:43538787-43538867 3.41e-01 80 chr21:40097501-40097581 1.82e-01 80 chr17:48367753-48367833 5.47e-02 80 chr2:86055994-86056074 9.37e-02 27_[+3(9.46e-05)]_45 chr3:45147730-45147810 4.69e-02 37_[+4(7.16e-05)]_35 chr1:119506186-119506266 4.56e-01 80 chr11:221057-221137 3.47e-01 80 chr14:23615253-23615333 2.57e-01 80 chr8:20134387-20134467 6.21e-01 80 chr5:31362606-31362686 4.67e-01 80 chr1:175379865-175379945 2.03e-03 80 chr5:31362407-31362487 1.52e-06 25_[+3(2.31e-05)]_1_[+2(5.39e-05)]_\ 4_[+4(1.18e-05)]_26 chr20:57587035-57587115 4.45e-01 80 chr3:143162733-143162813 2.10e-01 62_[+2(7.88e-05)]_10 chr8:29474744-29474824 6.70e-01 80 chr2:55327213-55327293 8.60e-01 80 chr11:35358799-35358879 9.30e-01 80 chr1:243978179-243978259 9.55e-05 12_[+3(2.31e-05)]_13_[+1(8.47e-05)]_\ 39 chr10:64873914-64873994 6.56e-03 80 chr1:9138439-9138519 9.76e-07 43_[+3(1.06e-05)]_13_[+4(1.18e-05)]_\ 8 chr10:21368115-21368195 3.62e-01 80 chr8:10634351-10634431 3.30e-01 80 chr15:58769656-58769736 1.11e-01 80 chr11:45060633-45060713 4.54e-02 80 chr7:134047419-134047499 6.08e-01 80 chr2:46294824-46294904 8.33e-01 80 chr1:40367604-40367684 6.43e-01 80 chr5:168221161-168221241 4.08e-01 80 chr2:43595781-43595861 2.38e-02 80 chr12:50124557-50124637 4.82e-01 80 chr3:125919572-125919652 1.93e-03 [+5(1.22e-05)]_72 chr1:89636350-89636430 2.56e-02 12_[+3(2.31e-05)]_60 chr2:152528957-152529037 1.76e-01 33_[+2(6.41e-05)]_39 chr15:29965553-29965633 3.56e-05 45_[+3(1.06e-05)]_13_[+4(1.18e-05)]_\ 6 chrX:15901551-15901631 3.37e-05 27_[+3(3.60e-05)]_13_[+4(1.18e-05)]_\ 24 chr16:47492401-47492481 5.32e-02 80 chr7:123633147-123633227 5.18e-06 37_[+3(2.31e-05)]_13_[+4(4.05e-05)]_\ 14 chr4:71579819-71579899 1.84e-02 57_[+5(8.38e-05)]_15 chr4:184256747-184256827 6.45e-02 80 chr17:47154416-47154496 4.47e-06 5_[+3(1.06e-05)]_1_[+2(5.39e-05)]_\ 58 chr7:120778381-120778461 7.65e-01 80 chr16:58467694-58467774 2.27e-02 80 chr6:69345093-69345173 8.70e-01 80 chr18:20048404-20048484 3.28e-01 80 chr7:6055934-6056014 2.87e-01 80 chr6:6655512-6655592 1.92e-01 80 chr4:57567012-57567092 2.89e-02 36_[+5(1.22e-05)]_36 chr4:75398125-75398205 7.31e-01 80 chr6:20203930-20204010 7.01e-03 46_[+3(2.31e-05)]_26 chr3:43128323-43128403 8.95e-03 4_[+5(1.22e-05)]_68 chr6:31526578-31526658 2.34e-03 34_[+5(3.44e-05)]_38 chr5:131793383-131793463 2.07e-01 80 chr7:93256541-93256621 2.79e-01 80 chr12:127438264-12743834 3.77e-01 80 chr11:45479284-45479364 3.25e-03 80 chr19:15408484-15408564 8.37e-02 80 chr11:14916853-14916933 5.15e-01 80 chr2:199079044-199079124 6.97e-01 80 chr2:209794441-209794521 2.74e-01 80 chr10:15669685-15669765 3.09e-02 80 chr7:120778581-120778661 2.86e-01 80 chr4:154458960-154459040 9.09e-06 [+3(3.60e-05)]_1_[+2(5.39e-05)]_4_\ [+4(1.18e-05)]_51 chr1:31369046-31369126 6.33e-01 80 chr4:100656053-100656133 2.93e-04 8_[+2(5.39e-05)]_4_[+4(1.18e-05)]_\ 52 chr14:93042228-93042308 1.07e-03 39_[+2(5.39e-05)]_33 chr5:133944931-133945011 2.10e-01 80 chr16:86698214-86698294 3.78e-02 80 chr2:100484338-100484418 3.42e-01 80 chr7:29659630-29659710 3.97e-05 22_[+3(3.60e-05)]_13_[+4(4.05e-05)]_\ 29 chr17:41430112-41430192 2.69e-04 14_[+3(1.06e-05)]_58 chr5:173098338-173098418 1.63e-01 80 chr4:38969032-38969112 2.53e-01 80 chr10:33686025-33686105 4.30e-04 16_[+2(1.22e-05)]_6_[+1(8.47e-05)]_\ 42 chr15:68193194-68193274 1.76e-04 8_[+3(3.60e-05)]_64 chr22:38636968-38637048 2.89e-01 80 chr8:94886456-94886536 1.34e-01 11_[+4(6.02e-05)]_61 chr19:11071618-11071698 7.09e-01 80 chr3:139882166-139882246 5.19e-02 80 chr12:132091202-13209128 9.03e-02 80 chr20:33893579-33893659 6.13e-02 65_[+5(9.86e-05)]_7 chr4:103708686-103708766 1.14e-01 80 chr22:22139228-22139308 3.28e-01 80 chr8:125459576-125459656 1.76e-01 80 chr9:110438200-110438280 3.19e-04 52_[+3(2.31e-05)]_1_[+2(5.39e-05)]_\ 11 chr20:46772358-46772438 9.96e-01 80 chr8:117889737-117889817 5.53e-01 80 chr20:46768473-46768553 6.06e-07 12_[+3(3.60e-05)]_1_[+2(5.39e-05)]_\ 4_[+4(1.18e-05)]_39 chr7:6056137-6056217 5.93e-01 80 chr5:5586280-5586360 8.09e-01 80 chr11:20000348-20000428 7.82e-04 62_[+4(8.91e-05)]_1_[+5(9.86e-05)]_\ 1 chr12:132090139-13209021 4.89e-07 22_[+2(5.39e-05)]_4_[+4(1.18e-05)]_\ 28_[+5(7.21e-05)]_2 chr2:167267522-167267602 9.00e-01 80 chr2:7894067-7894147 7.82e-03 39_[+1(8.47e-05)]_4_[+2(7.88e-05)]_\ 21 chr20:46768676-46768756 2.37e-01 80 chr11:68035113-68035193 6.54e-01 80 chr2:12697965-12698045 1.69e-04 24_[+3(2.31e-05)]_1_[+2(5.39e-05)]_\ 39 chr1:112275970-112276050 6.88e-01 80 chr7:106457640-106457720 3.25e-01 80 chr7:123262854-123262934 6.42e-01 80 chr1:181143023-181143103 4.91e-03 71_[+5(1.22e-05)]_1 chr12:127388336-12738841 4.61e-02 19_[+1(4.25e-05)]_53 chr3:31514508-31514588 2.83e-01 80 chr1:18748639-18748719 6.39e-04 56_[+5(1.22e-05)]_16 chr12:127388129-12738820 2.67e-03 10_[+3(3.60e-05)]_62 chr16:87421728-87421808 7.27e-02 80 chr17:35622712-35622792 5.20e-03 3_[+5(8.38e-05)]_69 chr10:29238508-29238588 9.94e-01 80 chr7:106437353-106437433 1.61e-03 10_[+3(3.60e-05)]_62 chr12:31771241-31771321 2.80e-02 21_[+3(2.31e-05)]_51 chr11:61717516-61717596 8.92e-02 80 chr16:87840646-87840726 1.61e-02 28_[+3(8.17e-05)]_44 chr17:77007700-77007780 6.45e-01 80 chr3:115705814-115705894 1.49e-02 80 chr4:38939084-38939164 9.22e-01 80 chr3:170557427-170557507 5.58e-01 80 chr19:2507324-2507404 1.64e-01 80 chr1:224007698-224007778 5.89e-01 80 chr6:44030753-44030833 5.06e-01 80 chr3:14273457-14273537 4.18e-01 80 -------------------------------------------------------------------------------- ******************************************************************************** ******************************************************************************** Stopped because requested number of motifs (5) found. ******************************************************************************** CPU: c17n10.farnam.hpc.yale.internal ********************************************************************************