******************************************************************************** MEME - Motif discovery tool ******************************************************************************** MEME version 5.3.3 (Release date: Sun Feb 7 15:39:52 2021 -0800) For further information on how to interpret these results please access https://meme-suite.org/meme. To get a copy of the MEME Suite software please access https://meme-suite.org. ******************************************************************************** ******************************************************************************** REFERENCE ******************************************************************************** If you use this program in your research, please cite: Timothy L. Bailey and Charles Elkan, "Fitting a mixture model by expectation maximization to discover motifs in biopolymers", Proceedings of the Second International Conference on Intelligent Systems for Molecular Biology, pp. 28-36, AAAI Press, Menlo Park, California, 1994. ******************************************************************************** ******************************************************************************** TRAINING SET ******************************************************************************** PRIMARY SEQUENCES= ../result/final_prediction/K562/fasta/RankLinear0.6_40/ZNF384.fasta CONTROL SEQUENCES= --none-- ALPHABET= ACGT Sequence name Weight Length Sequence name Weight Length ------------- ------ ------ ------------- ------ ------ chr2:86595592-86595672 1.0000 80 chrX:130880569-130880649 1.0000 80 chr6:16317065-16317145 1.0000 80 chr19:17981240-17981320 1.0000 80 chr2:11969506-11969586 1.0000 80 chr10:7914109-7914189 1.0000 80 chr9:114360206-114360286 1.0000 80 chr6:43037852-43037932 1.0000 80 chr2:166984567-166984647 1.0000 80 chr4:74519495-74519575 1.0000 80 chr6:87776301-87776381 1.0000 80 chr2:4007049-4007129 1.0000 80 chr9:94489685-94489765 1.0000 80 chr8:56941534-56941614 1.0000 80 chr14:52487712-52487792 1.0000 80 chr11:31418962-31419042 1.0000 80 chr11:65130120-65130200 1.0000 80 chr4:186017329-186017409 1.0000 80 chr12:113634920-11363500 1.0000 80 chr2:10188963-10189043 1.0000 80 chr17:20020134-20020214 1.0000 80 chr4:75055127-75055207 1.0000 80 chr19:10369806-10369886 1.0000 80 chr2:216134720-216134800 1.0000 80 chr17:71206644-71206724 1.0000 80 chr14:55204235-55204315 1.0000 80 chr12:95638333-95638413 1.0000 80 chr3:27722824-27722904 1.0000 80 chr12:93221779-93221859 1.0000 80 chrX:23802652-23802732 1.0000 80 chr19:15202824-15202904 1.0000 80 chr13:20771622-20771702 1.0000 80 chr19:51598142-51598222 1.0000 80 chr15:66579942-66580022 1.0000 80 chr18:3995659-3995739 1.0000 80 chrX:130896859-130896939 1.0000 80 chr1:150505176-150505256 1.0000 80 chr16:4598891-4598971 1.0000 80 chr3:148673416-148673496 1.0000 80 chr12:122120109-12212018 1.0000 80 chr12:116504573-11650465 1.0000 80 chr2:99453679-99453759 1.0000 80 chr1:220164496-220164576 1.0000 80 chr6:152589524-152589604 1.0000 80 chr3:186307136-186307216 1.0000 80 chr15:44954818-44954898 1.0000 80 chr12:108070177-10807025 1.0000 80 chr9:73027075-73027155 1.0000 80 chr4:175286336-175286416 1.0000 80 chr12:106780141-10678022 1.0000 80 chr19:38625373-38625453 1.0000 80 chr10:123494201-12349428 1.0000 80 chr7:65496005-65496085 1.0000 80 chr20:34026964-34027044 1.0000 80 chr11:58513178-58513258 1.0000 80 chr13:33243348-33243428 1.0000 80 chr3:157335991-157336071 1.0000 80 chr11:124285392-12428547 1.0000 80 chr4:130284005-130284085 1.0000 80 chr11:17526251-17526331 1.0000 80 chr8:72740268-72740348 1.0000 80 chr19:11047462-11047542 1.0000 80 chr19:28957164-28957244 1.0000 80 chr8:37248123-37248203 1.0000 80 chr21:28221905-28221985 1.0000 80 chr20:30048442-30048522 1.0000 80 chr12:57151421-57151501 1.0000 80 chr20:32400915-32400995 1.0000 80 chr12:49147383-49147463 1.0000 80 chr3:127415163-127415243 1.0000 80 chr22:19378089-19378169 1.0000 80 chr14:37023006-37023086 1.0000 80 chr1:230404809-230404889 1.0000 80 chr11:14476723-14476803 1.0000 80 chr1:51954114-51954194 1.0000 80 chr7:28429182-28429262 1.0000 80 chrX:115009451-115009531 1.0000 80 chr9:124049918-124049998 1.0000 80 chr1:162006869-162006949 1.0000 80 chr7:103019905-103019985 1.0000 80 chr1:27136679-27136759 1.0000 80 chr5:36415077-36415157 1.0000 80 chr20:3096332-3096412 1.0000 80 chr6:160141800-160141880 1.0000 80 chr3:183613176-183613256 1.0000 80 chr11:93905000-93905080 1.0000 80 chr16:15850564-15850644 1.0000 80 chr11:111802672-11180275 1.0000 80 chr1:174713240-174713320 1.0000 80 chr7:22605073-22605153 1.0000 80 chrX:115057273-115057353 1.0000 80 chr15:40509552-40509632 1.0000 80 chr8:127836792-127836872 1.0000 80 chr14:103057051-10305713 1.0000 80 chr5:38994552-38994632 1.0000 80 chr17:7816415-7816495 1.0000 80 chr11:124633208-12463328 1.0000 80 chr1:208412500-208412580 1.0000 80 chr6:53516123-53516203 1.0000 80 chr10:22242680-22242760 1.0000 80 chr10:81227285-81227365 1.0000 80 chr19:13305473-13305553 1.0000 80 chr8:17924005-17924085 1.0000 80 chr9:96923333-96923413 1.0000 80 chr12:67749763-67749843 1.0000 80 chr11:3887591-3887671 1.0000 80 chr5:123006822-123006902 1.0000 80 chr8:141737551-141737631 1.0000 80 chr17:73168043-73168123 1.0000 80 chr18:3594005-3594085 1.0000 80 chr7:90718827-90718907 1.0000 80 chr6:68906677-68906757 1.0000 80 chr10:93056408-93056488 1.0000 80 chr1:236509188-236509268 1.0000 80 chr2:30937107-30937187 1.0000 80 chr19:10111050-10111130 1.0000 80 chr4:170586712-170586792 1.0000 80 chr15:98838535-98838615 1.0000 80 chr19:47343905-47343985 1.0000 80 chr17:46429339-46429419 1.0000 80 chr8:96001373-96001453 1.0000 80 chrX:134099541-134099621 1.0000 80 chr2:20293526-20293606 1.0000 80 chr12:107712093-10771217 1.0000 80 chr12:112383187-11238326 1.0000 80 chr3:48957382-48957462 1.0000 80 chr7:18395916-18395996 1.0000 80 chr2:103270675-103270755 1.0000 80 chr9:130397103-130397183 1.0000 80 chr12:923499-923579 1.0000 80 chr10:85786673-85786753 1.0000 80 chr6:7144005-7144085 1.0000 80 chr20:33684165-33684245 1.0000 80 chr17:46231183-46231263 1.0000 80 chr4:77679608-77679688 1.0000 80 chr16:85133152-85133232 1.0000 80 chr19:1218147-1218227 1.0000 80 chr18:19770943-19771023 1.0000 80 chr3:169907039-169907119 1.0000 80 chr1:174063094-174063174 1.0000 80 chr15:68006777-68006857 1.0000 80 chr15:59983567-59983647 1.0000 80 chr20:56169493-56169573 1.0000 80 chr12:111712761-11171284 1.0000 80 chr20:51812917-51812997 1.0000 80 chr2:113896131-113896211 1.0000 80 chr17:5100402-5100482 1.0000 80 chr11:47475911-47475991 1.0000 80 chr16:69158008-69158088 1.0000 80 chr5:158943027-158943107 1.0000 80 chr1:55750605-55750685 1.0000 80 chr12:97380872-97380952 1.0000 80 chr3:18430752-18430832 1.0000 80 chr12:57670886-57670966 1.0000 80 chr17:58220415-58220495 1.0000 80 chr8:76314414-76314494 1.0000 80 chr18:8696946-8697026 1.0000 80 chr5:35003622-35003702 1.0000 80 chr10:102000682-10200076 1.0000 80 chr9:75815771-75815851 1.0000 80 chr7:102702497-102702577 1.0000 80 chr12:65176134-65176214 1.0000 80 chr8:25027825-25027905 1.0000 80 chr7:105405723-105405803 1.0000 80 chr8:17434510-17434590 1.0000 80 chr11:86002966-86003046 1.0000 80 chr4:48946836-48946916 1.0000 80 chr7:140711984-140712064 1.0000 80 chr17:4314623-4314703 1.0000 80 chr11:47123141-47123221 1.0000 80 chrX:115015060-115015140 1.0000 80 chr6:24389621-24389701 1.0000 80 chr7:66949371-66949451 1.0000 80 chr7:27960928-27961008 1.0000 80 chr12:15148900-15148980 1.0000 80 chr14:91639625-91639705 1.0000 80 chr1:204256336-204256416 1.0000 80 chr6:125476074-125476154 1.0000 80 chr4:79593094-79593174 1.0000 80 chr3:32440681-32440761 1.0000 80 chr19:2264530-2264610 1.0000 80 chr2:231025021-231025101 1.0000 80 chr13:96313414-96313494 1.0000 80 chr7:98470108-98470188 1.0000 80 chr6:11014058-11014138 1.0000 80 chr6:141884119-141884199 1.0000 80 chrX:24072323-24072403 1.0000 80 chr15:40971440-40971520 1.0000 80 chr19:40257482-40257562 1.0000 80 chr14:35908145-35908225 1.0000 80 chr16:49034591-49034671 1.0000 80 chr1:214801651-214801731 1.0000 80 chr11:7716049-7716129 1.0000 80 chr2:220460074-220460154 1.0000 80 chr1:20760722-20760802 1.0000 80 chr19:18383350-18383430 1.0000 80 chr2:27526438-27526518 1.0000 80 chr10:15135012-15135092 1.0000 80 chr7:6036990-6037070 1.0000 80 chr2:44463559-44463639 1.0000 80 chrX:130947315-130947395 1.0000 80 chr12:54585435-54585515 1.0000 80 chr1:203651025-203651105 1.0000 80 chr2:43804586-43804666 1.0000 80 chr11:35843478-35843558 1.0000 80 chr1:20539473-20539553 1.0000 80 chr20:57468088-57468168 1.0000 80 chr6:80578017-80578097 1.0000 80 chr11:112151450-11215153 1.0000 80 chr1:46872145-46872225 1.0000 80 chr9:112666011-112666091 1.0000 80 chr17:63058842-63058922 1.0000 80 chr19:34827880-34827960 1.0000 80 chr17:75217106-75217186 1.0000 80 chr5:55232101-55232181 1.0000 80 chr2:7058918-7058998 1.0000 80 chr17:72404554-72404634 1.0000 80 chr15:76214250-76214330 1.0000 80 chr1:53152043-53152123 1.0000 80 chr11:96056640-96056720 1.0000 80 chr1:226738264-226738344 1.0000 80 chr20:47521689-47521769 1.0000 80 chr11:72002001-72002081 1.0000 80 chr5:131515972-131516052 1.0000 80 chr15:72036414-72036494 1.0000 80 chr11:45315296-45315376 1.0000 80 chr11:19925201-19925281 1.0000 80 chr4:13658247-13658327 1.0000 80 chr6:20528715-20528795 1.0000 80 chr8:1729545-1729625 1.0000 80 chr7:151630473-151630553 1.0000 80 chr2:180990379-180990459 1.0000 80 chr10:75217035-75217115 1.0000 80 chr10:7453003-7453083 1.0000 80 chr8:117484096-117484176 1.0000 80 chr7:35464638-35464718 1.0000 80 chr20:441043-441123 1.0000 80 chr11:66789334-66789414 1.0000 80 chr16:75594056-75594136 1.0000 80 chr1:9352915-9352995 1.0000 80 chr3:8936371-8936451 1.0000 80 chr1:151168950-151169030 1.0000 80 chr19:7633468-7633548 1.0000 80 chr3:196172416-196172496 1.0000 80 chr6:31797848-31797928 1.0000 80 chrX:52004686-52004766 1.0000 80 chr3:33436281-33436361 1.0000 80 chr3:10024764-10024844 1.0000 80 chr1:90007305-90007385 1.0000 80 chr4:2406058-2406138 1.0000 80 ******************************************************************************** ******************************************************************************** COMMAND LINE SUMMARY ******************************************************************************** This information can also be useful in the event you wish to report a problem with the MEME software. command: meme -oc ../result/final_prediction/K562/inference_raw/MEME/RankLinear0.6_40_ZNF384/ -dna -nmotifs 5 -w 8 -maxsize 250000 -nostatus ../result/final_prediction/K562/fasta/RankLinear0.6_40/ZNF384.fasta model: mod= zoops nmotifs= 5 evt= inf objective function: em= E-value of product of p-values starts= E-value of product of p-values strands: + width: minw= 8 maxw= 8 nsites: minsites= 2 maxsites= 250 wnsites= 0.8 theta: spmap= uni spfuzz= 0.5 em: prior= dirichlet b= 0.01 maxiter= 50 distance= 1e-05 trim: wg= 11 ws= 1 endgaps= yes data: n= 20000 N= 250 sample: seed= 0 hsfrac= 0 searchsize= 20000 norand= no csites= 1000 Letter frequencies in dataset: A 0.272 C 0.224 G 0.222 T 0.281 Background letter frequencies (from file dataset with add-one prior applied): A 0.272 C 0.224 G 0.222 T 0.281 Background model order: 0 ******************************************************************************** ******************************************************************************** MOTIF AAAAAAAA MEME-1 width = 8 sites = 85 llr = 817 E-value = 1.7e-109 ******************************************************************************** -------------------------------------------------------------------------------- Motif AAAAAAAA MEME-1 Description -------------------------------------------------------------------------------- Simplified A aaaaaaa9 pos.-specific C :::::::: probability G :::::::1 matrix T :::::::: bits 2.2 2.0 *** 1.7 ****** 1.5 ******** Relative 1.3 ******** Entropy 1.1 ******** (13.9 bits) 0.9 ******** 0.7 ******** 0.4 ******** 0.2 ******** 0.0 -------- Multilevel AAAAAAAA consensus sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AAAAAAAA MEME-1 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr16:75594056-75594136 33 3.00e-05 aaagggaaaa aaaaaaaa aaGCCCTGAA chr20:441043-441123 40 3.00e-05 tctctcaaaa aaaaaaaa aaaaaaTGCT chr8:117484096-117484176 28 3.00e-05 GGAGGGGGAA AAAAAAAA AAACAGCCGT chr10:75217035-75217115 6 3.00e-05 aaaaa aaaaaaaa gctagtcatg chr6:20528715-20528795 3 3.00e-05 aa aaaaaaaa GTTAATAGAA chr11:19925201-19925281 2 3.00e-05 A AAAAAAAA AAAGTCCTTT chr5:131515972-131516052 11 3.00e-05 GCTAGAGGAA AAAAAAAA AACTGTCCGA chr11:96056640-96056720 10 3.00e-05 aatgctgaa aaaaAAAA AAACCCATCT chr1:20539473-20539553 5 3.00e-05 aaaa aaaaaaaa GCAACTGGGG chr11:35843478-35843558 2 3.00e-05 a aaaaaaaa aGCTGAGGCG chr1:203651025-203651105 39 3.00e-05 CCTTTACTAG AAAAAAAA AAAAGTTCAC chr7:6036990-6037070 68 3.00e-05 TTTGCAACTG AAAAAAAA AAAAA chr2:220460074-220460154 1 3.00e-05 . aaaaaaaa aGCGGGGGAG chrX:24072323-24072403 4 3.00e-05 GAA AAAAAAAA ACAAAACACA chr6:11014058-11014138 45 3.00e-05 ccacaaagca aaaaaaaa aaaaaaatcc chr19:2264530-2264610 34 3.00e-05 gcgacatgtc aaaaaaaa aaaaaaaaaa chr6:125476074-125476154 10 3.00e-05 ATTAAAAAG AAAAAAAA AAAGGTTCAT chr11:47123141-47123221 12 3.00e-05 TTCATCTTAG AAAAAAAA AAAACTTGCA chr7:140711984-140712064 1 3.00e-05 . aaaaaaaa aaGCAGAGGC chr11:86002966-86003046 8 3.00e-05 aaaaaac aaaaaaaa ccaaaaaCTT chr7:105405723-105405803 40 3.00e-05 ctgggTCAGA AAAAAAAA AAAAACCCTC chr12:57670886-57670966 5 3.00e-05 AAAA AAAAAAAA AAGACTGCCC chr12:97380872-97380952 62 3.00e-05 CAGCTGTCTC AAAAAAAA TTTGTTGGtt chr16:69158008-69158088 9 3.00e-05 aggggaaa aaaaaaaa aaGGATAATA chr20:51812917-51812997 5 3.00e-05 aaaa aaaaaaaa aaTGTGCTTT chr12:111712761-11171284 17 3.00e-05 caaaaaaaca aaaaaaaa CCACCAATAG chr15:68006777-68006857 7 3.00e-05 aaaaaa aaaaaaaa aaCCACCACC chr19:1218147-1218227 1 3.00e-05 . aaaaaaaa GTGTCCTAAC chr4:77679608-77679688 12 3.00e-05 taaaaaaaaa aaaaaaaa GGCATGCGCC chr20:33684165-33684245 1 3.00e-05 . aaaaaaaa GCTGAGTGTC chr2:20293526-20293606 8 3.00e-05 CTGGGAG AAAAAAAA AAATCTCTCT chr8:96001373-96001453 22 3.00e-05 aaagttgttc aaaaaAAA GAGAAAAAAA chr4:170586712-170586792 43 3.00e-05 ACAGAGAGAG AAAAAAAA AAACCATCTG chr1:236509188-236509268 71 3.00e-05 Cattaaaaaa aaaaaaaa aa chr7:90718827-90718907 61 3.00e-05 CTGAGGGGAA AAAAAAAA AAAAACAGGC chr18:3594005-3594085 7 3.00e-05 AAGAAA AAAAAAAA AAAAAGCCCC chr8:141737551-141737631 41 3.00e-05 TAGCAATGCA AAAAAAAA AAAAAATACT chr8:17924005-17924085 51 3.00e-05 tgacactaac aaaaaaaa aggaaaaaaa chr10:81227285-81227365 1 3.00e-05 . aaaaaaaa GGCTGTAAAC chr10:22242680-22242760 71 3.00e-05 ACTGAACTTT aaaaaaaa aa chr1:208412500-208412580 1 3.00e-05 . aaaaaaaa aaaaaGCACA chr1:174713240-174713320 1 3.00e-05 . aaaaaaaa aaaaaaaGCG chr5:36415077-36415157 42 3.00e-05 TGTTAAGGGA AAAAAAAA AAAAAAAACC chr7:103019905-103019985 29 3.00e-05 ACAGACCAaa aaaaaaaa aaaagataag chr1:51954114-51954194 31 3.00e-05 AAAGTTTTGT AAAAAAAA AAAAAAAAAA chr11:14476723-14476803 5 3.00e-05 aaaa aaaaaaaa aTCACTGCAC chr22:19378089-19378169 39 3.00e-05 ctgtctcaaa aaaaaaaa aaaaaaaaaa chr20:32400915-32400995 35 3.00e-05 ccagctctgt aaaaaaaa aaaaaaaagg chr8:37248123-37248203 4 3.00e-05 AAA AAAAAAAA GCAACATAGC chr19:28957164-28957244 2 3.00e-05 A AAAAAAAA AAGGCTGCCA chr8:72740268-72740348 1 3.00e-05 . aaaaaaaa aaTCTGCAGC chr11:17526251-17526331 5 3.00e-05 AGGA AAAAAAAA AAAGTTCCAC chr3:157335991-157336071 38 3.00e-05 aaaaaaaaaa aaaaaaaa GGCGAACTAA chr10:123494201-12349428 1 3.00e-05 . aaaaaaaa aaGCAAAGCG chr9:73027075-73027155 41 3.00e-05 aaaaaaaaaa aaaaaaaa aaaaaaaGTC chr15:44954818-44954898 31 3.00e-05 ccttatcttt aaaaaaaa aaaaaaaaaa chr6:152589524-152589604 8 3.00e-05 AAAAAAA AAAAAAAA CCACCAATGG chr2:99453679-99453759 1 3.00e-05 . AAAAAAAA GGTTCCAATC chr18:3995659-3995739 66 3.00e-05 ACGTGAGTAA AAAAAAAA AAACCAC chr15:66579942-66580022 1 3.00e-05 . aaaaaaaa aaaTTCAATG chr13:20771622-20771702 1 3.00e-05 . aaaaaaaa GCAATTGCAA chr12:93221779-93221859 72 3.00e-05 TAAAAAAAGA AAAAAAAA T chr3:27722824-27722904 2 3.00e-05 A AAAAAAAA AAGACAGTGA chr17:71206644-71206724 1 3.00e-05 . aaaaaaaa GTCACTTTCA chr4:186017329-186017409 8 3.00e-05 aaaaaaa aaaaaaaa aaaaTGCAAT chr2:166984567-166984647 1 3.00e-05 . AAAAAAAA AAAGTCAAGA chr6:43037852-43037932 3 3.00e-05 AG AAAaaaaa cacctccaga chr2:11969506-11969586 70 3.00e-05 ACAGCCTTTA AAAAAAAA AAA chr2:86595592-86595672 35 3.00e-05 CTGGGaaaaa aaaaaaaa aaaaaaaaaa chr2:44463559-44463639 1 5.44e-05 . aaaaaaaG TTGTAATGAA chr17:46429339-46429419 73 5.44e-05 CCTAGTTCTT aaaaaaag chr14:37023006-37023086 1 5.44e-05 . aaaaaaaG TTGTGCTCAG chr12:57151421-57151501 1 5.44e-05 . aaaaaaaG TGCTCTGGCA chr2:216134720-216134800 1 5.44e-05 . AAAAAAAG ACACTCTTTG chr14:52487712-52487792 29 5.44e-05 TCCCCAGCAG AAAAAAAG CAGCTCTGAG chrX:52004686-52004766 8 1.28e-04 TTCTCTC AAAAAAGA TTCCGCGGCA chr3:8936371-8936451 10 1.28e-04 CATTCCCCT AAAACAAA TGTTCCATTC chr11:72002001-72002081 6 1.28e-04 aaacc aaaacaaa aagttaccac chrX:115015060-115015140 52 1.28e-04 CTTTGCTGAG GAAAAAAA CACCAGCCAT chr7:22605073-22605153 71 1.28e-04 TCATGGCAGG AAAAAAGA AG chr1:150505176-150505256 73 1.28e-04 actgactaag gaaaaaaa chr17:46231183-46231263 73 1.59e-04 GCCCTGAAAT Taaaaaaa chr1:220164496-220164576 73 1.59e-04 GGAGTGACCT Taaaaaaa chr14:103057051-10305713 1 2.08e-04 . AAAAAGAA TGCTTGTCAA chr12:122120109-12212018 1 2.08e-04 . aaaaGAAA AAGTCTCTCA -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AAAAAAAA MEME-1 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr16:75594056-75594136 3e-05 32_[+1]_40 chr20:441043-441123 3e-05 39_[+1]_33 chr8:117484096-117484176 3e-05 27_[+1]_45 chr10:75217035-75217115 3e-05 5_[+1]_67 chr6:20528715-20528795 3e-05 2_[+1]_70 chr11:19925201-19925281 3e-05 1_[+1]_71 chr5:131515972-131516052 3e-05 10_[+1]_62 chr11:96056640-96056720 3e-05 9_[+1]_63 chr1:20539473-20539553 3e-05 4_[+1]_68 chr11:35843478-35843558 3e-05 1_[+1]_71 chr1:203651025-203651105 3e-05 38_[+1]_34 chr7:6036990-6037070 3e-05 67_[+1]_5 chr2:220460074-220460154 3e-05 [+1]_72 chrX:24072323-24072403 3e-05 3_[+1]_69 chr6:11014058-11014138 3e-05 44_[+1]_28 chr19:2264530-2264610 3e-05 33_[+1]_39 chr6:125476074-125476154 3e-05 9_[+1]_63 chr11:47123141-47123221 3e-05 11_[+1]_61 chr7:140711984-140712064 3e-05 [+1]_72 chr11:86002966-86003046 3e-05 7_[+1]_65 chr7:105405723-105405803 3e-05 39_[+1]_33 chr12:57670886-57670966 3e-05 4_[+1]_68 chr12:97380872-97380952 3e-05 61_[+1]_11 chr16:69158008-69158088 3e-05 8_[+1]_64 chr20:51812917-51812997 3e-05 4_[+1]_68 chr12:111712761-11171284 3e-05 16_[+1]_56 chr15:68006777-68006857 3e-05 6_[+1]_66 chr19:1218147-1218227 3e-05 [+1]_72 chr4:77679608-77679688 3e-05 11_[+1]_61 chr20:33684165-33684245 3e-05 [+1]_72 chr2:20293526-20293606 3e-05 7_[+1]_65 chr8:96001373-96001453 3e-05 21_[+1]_51 chr4:170586712-170586792 3e-05 42_[+1]_30 chr1:236509188-236509268 3e-05 70_[+1]_2 chr7:90718827-90718907 3e-05 60_[+1]_12 chr18:3594005-3594085 3e-05 6_[+1]_66 chr8:141737551-141737631 3e-05 40_[+1]_32 chr8:17924005-17924085 3e-05 50_[+1]_22 chr10:81227285-81227365 3e-05 [+1]_72 chr10:22242680-22242760 3e-05 70_[+1]_2 chr1:208412500-208412580 3e-05 [+1]_72 chr1:174713240-174713320 3e-05 [+1]_72 chr5:36415077-36415157 3e-05 41_[+1]_31 chr7:103019905-103019985 3e-05 28_[+1]_44 chr1:51954114-51954194 3e-05 30_[+1]_42 chr11:14476723-14476803 3e-05 4_[+1]_68 chr22:19378089-19378169 3e-05 38_[+1]_34 chr20:32400915-32400995 3e-05 34_[+1]_38 chr8:37248123-37248203 3e-05 3_[+1]_69 chr19:28957164-28957244 3e-05 1_[+1]_71 chr8:72740268-72740348 3e-05 [+1]_72 chr11:17526251-17526331 3e-05 4_[+1]_68 chr3:157335991-157336071 3e-05 37_[+1]_35 chr10:123494201-12349428 3e-05 [+1]_72 chr9:73027075-73027155 3e-05 40_[+1]_32 chr15:44954818-44954898 3e-05 30_[+1]_42 chr6:152589524-152589604 3e-05 7_[+1]_65 chr2:99453679-99453759 3e-05 [+1]_72 chr18:3995659-3995739 3e-05 65_[+1]_7 chr15:66579942-66580022 3e-05 [+1]_72 chr13:20771622-20771702 3e-05 [+1]_72 chr12:93221779-93221859 3e-05 71_[+1]_1 chr3:27722824-27722904 3e-05 1_[+1]_71 chr17:71206644-71206724 3e-05 [+1]_72 chr4:186017329-186017409 3e-05 7_[+1]_65 chr2:166984567-166984647 3e-05 [+1]_72 chr6:43037852-43037932 3e-05 2_[+1]_70 chr2:11969506-11969586 3e-05 69_[+1]_3 chr2:86595592-86595672 3e-05 34_[+1]_38 chr2:44463559-44463639 5.4e-05 [+1]_72 chr17:46429339-46429419 5.4e-05 72_[+1] chr14:37023006-37023086 5.4e-05 [+1]_72 chr12:57151421-57151501 5.4e-05 [+1]_72 chr2:216134720-216134800 5.4e-05 [+1]_72 chr14:52487712-52487792 5.4e-05 28_[+1]_44 chrX:52004686-52004766 0.00013 7_[+1]_65 chr3:8936371-8936451 0.00013 9_[+1]_63 chr11:72002001-72002081 0.00013 5_[+1]_67 chrX:115015060-115015140 0.00013 51_[+1]_21 chr7:22605073-22605153 0.00013 70_[+1]_2 chr1:150505176-150505256 0.00013 72_[+1] chr17:46231183-46231263 0.00016 72_[+1] chr1:220164496-220164576 0.00016 72_[+1] chr14:103057051-10305713 0.00021 [+1]_72 chr12:122120109-12212018 0.00021 [+1]_72 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AAAAAAAA MEME-1 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF AAAAAAAA width=8 seqs=85 chr16:75594056-75594136 ( 33) AAAAAAAA 1 chr20:441043-441123 ( 40) AAAAAAAA 1 chr8:117484096-117484176 ( 28) AAAAAAAA 1 chr10:75217035-75217115 ( 6) AAAAAAAA 1 chr6:20528715-20528795 ( 3) AAAAAAAA 1 chr11:19925201-19925281 ( 2) AAAAAAAA 1 chr5:131515972-131516052 ( 11) AAAAAAAA 1 chr11:96056640-96056720 ( 10) AAAAAAAA 1 chr1:20539473-20539553 ( 5) AAAAAAAA 1 chr11:35843478-35843558 ( 2) AAAAAAAA 1 chr1:203651025-203651105 ( 39) AAAAAAAA 1 chr7:6036990-6037070 ( 68) AAAAAAAA 1 chr2:220460074-220460154 ( 1) AAAAAAAA 1 chrX:24072323-24072403 ( 4) AAAAAAAA 1 chr6:11014058-11014138 ( 45) AAAAAAAA 1 chr19:2264530-2264610 ( 34) AAAAAAAA 1 chr6:125476074-125476154 ( 10) AAAAAAAA 1 chr11:47123141-47123221 ( 12) AAAAAAAA 1 chr7:140711984-140712064 ( 1) AAAAAAAA 1 chr11:86002966-86003046 ( 8) AAAAAAAA 1 chr7:105405723-105405803 ( 40) AAAAAAAA 1 chr12:57670886-57670966 ( 5) AAAAAAAA 1 chr12:97380872-97380952 ( 62) AAAAAAAA 1 chr16:69158008-69158088 ( 9) AAAAAAAA 1 chr20:51812917-51812997 ( 5) AAAAAAAA 1 chr12:111712761-11171284 ( 17) AAAAAAAA 1 chr15:68006777-68006857 ( 7) AAAAAAAA 1 chr19:1218147-1218227 ( 1) AAAAAAAA 1 chr4:77679608-77679688 ( 12) AAAAAAAA 1 chr20:33684165-33684245 ( 1) AAAAAAAA 1 chr2:20293526-20293606 ( 8) AAAAAAAA 1 chr8:96001373-96001453 ( 22) AAAAAAAA 1 chr4:170586712-170586792 ( 43) AAAAAAAA 1 chr1:236509188-236509268 ( 71) AAAAAAAA 1 chr7:90718827-90718907 ( 61) AAAAAAAA 1 chr18:3594005-3594085 ( 7) AAAAAAAA 1 chr8:141737551-141737631 ( 41) AAAAAAAA 1 chr8:17924005-17924085 ( 51) AAAAAAAA 1 chr10:81227285-81227365 ( 1) AAAAAAAA 1 chr10:22242680-22242760 ( 71) AAAAAAAA 1 chr1:208412500-208412580 ( 1) AAAAAAAA 1 chr1:174713240-174713320 ( 1) AAAAAAAA 1 chr5:36415077-36415157 ( 42) AAAAAAAA 1 chr7:103019905-103019985 ( 29) AAAAAAAA 1 chr1:51954114-51954194 ( 31) AAAAAAAA 1 chr11:14476723-14476803 ( 5) AAAAAAAA 1 chr22:19378089-19378169 ( 39) AAAAAAAA 1 chr20:32400915-32400995 ( 35) AAAAAAAA 1 chr8:37248123-37248203 ( 4) AAAAAAAA 1 chr19:28957164-28957244 ( 2) AAAAAAAA 1 chr8:72740268-72740348 ( 1) AAAAAAAA 1 chr11:17526251-17526331 ( 5) AAAAAAAA 1 chr3:157335991-157336071 ( 38) AAAAAAAA 1 chr10:123494201-12349428 ( 1) AAAAAAAA 1 chr9:73027075-73027155 ( 41) AAAAAAAA 1 chr15:44954818-44954898 ( 31) AAAAAAAA 1 chr6:152589524-152589604 ( 8) AAAAAAAA 1 chr2:99453679-99453759 ( 1) AAAAAAAA 1 chr18:3995659-3995739 ( 66) AAAAAAAA 1 chr15:66579942-66580022 ( 1) AAAAAAAA 1 chr13:20771622-20771702 ( 1) AAAAAAAA 1 chr12:93221779-93221859 ( 72) AAAAAAAA 1 chr3:27722824-27722904 ( 2) AAAAAAAA 1 chr17:71206644-71206724 ( 1) AAAAAAAA 1 chr4:186017329-186017409 ( 8) AAAAAAAA 1 chr2:166984567-166984647 ( 1) AAAAAAAA 1 chr6:43037852-43037932 ( 3) AAAAAAAA 1 chr2:11969506-11969586 ( 70) AAAAAAAA 1 chr2:86595592-86595672 ( 35) AAAAAAAA 1 chr2:44463559-44463639 ( 1) AAAAAAAG 1 chr17:46429339-46429419 ( 73) AAAAAAAG 1 chr14:37023006-37023086 ( 1) AAAAAAAG 1 chr12:57151421-57151501 ( 1) AAAAAAAG 1 chr2:216134720-216134800 ( 1) AAAAAAAG 1 chr14:52487712-52487792 ( 29) AAAAAAAG 1 chrX:52004686-52004766 ( 8) AAAAAAGA 1 chr3:8936371-8936451 ( 10) AAAACAAA 1 chr11:72002001-72002081 ( 6) AAAACAAA 1 chrX:115015060-115015140 ( 52) GAAAAAAA 1 chr7:22605073-22605153 ( 71) AAAAAAGA 1 chr1:150505176-150505256 ( 73) GAAAAAAA 1 chr17:46231183-46231263 ( 73) TAAAAAAA 1 chr1:220164496-220164576 ( 73) TAAAAAAA 1 chr14:103057051-10305713 ( 1) AAAAAGAA 1 chr12:122120109-12212018 ( 1) AAAAGAAA 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AAAAAAAA MEME-1 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 18250 bayes= 9.25601 E= 1.7e-109 181 -1305 -324 -358 188 -1305 -1305 -1305 188 -1305 -1305 -1305 188 -1305 -1305 -1305 182 -325 -424 -1305 186 -1305 -424 -1305 184 -1305 -324 -1305 177 -1305 -165 -1305 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AAAAAAAA MEME-1 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 85 E= 1.7e-109 0.952941 0.000000 0.023529 0.023529 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.964706 0.023529 0.011765 0.000000 0.988235 0.000000 0.011765 0.000000 0.976471 0.000000 0.023529 0.000000 0.929412 0.000000 0.070588 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AAAAAAAA MEME-1 regular expression -------------------------------------------------------------------------------- AAAAAAAA -------------------------------------------------------------------------------- Time 4.87 secs. ******************************************************************************** ******************************************************************************** MOTIF TTTTTTTT MEME-2 width = 8 sites = 97 llr = 886 E-value = 2.2e-113 ******************************************************************************** -------------------------------------------------------------------------------- Motif TTTTTTTT MEME-2 Description -------------------------------------------------------------------------------- Simplified A :::::::: pos.-specific C 1::::::1 probability G :::::::: matrix T 9aaaaaa9 bits 2.2 2.0 1.7 ***** 1.5 ******* Relative 1.3 ******** Entropy 1.1 ******** (13.2 bits) 0.9 ******** 0.7 ******** 0.4 ******** 0.2 ******** 0.0 -------- Multilevel TTTTTTTT consensus sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTTTTTTT MEME-2 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr3:10024764-10024844 71 3.89e-05 TCTGTGGAAt tttttttt tt chr3:33436281-33436361 37 3.89e-05 tgtttttttt tttttttt ttttaaataa chr3:8936371-8936451 73 3.89e-05 GTTTAAGCGC tttttttt chr10:7453003-7453083 29 3.89e-05 GCGCTCtttt tttttttt tttttttttt chr2:180990379-180990459 3 3.89e-05 tt tttttttt tAAAGAGATG chr4:13658247-13658327 4 3.89e-05 TTT TTTTTTTT GCATCTTTGC chr15:72036414-72036494 73 3.89e-05 TTGAATCAGC tttttttt chr1:226738264-226738344 40 3.89e-05 ACCTTTTTTT TTTTTTTT AAGTGGTGAG chr5:55232101-55232181 73 3.89e-05 AGTAGGtttt tttttttt chr17:63058842-63058922 34 3.89e-05 GTCCAGTGCt tttttttt tttttttttg chr9:112666011-112666091 67 3.89e-05 CTGGATTTTT TTTTTTTT TTTTAC chr6:80578017-80578097 64 3.89e-05 TGGGTTGTTT TTTTTTTT TAAAGGTCT chr20:57468088-57468168 34 3.89e-05 GCGTGGtttc tttttttt tttttttttt chr2:43804586-43804666 65 3.89e-05 ACAACTGCTT TTTTTTTT TGGTATGT chr12:54585435-54585515 32 3.89e-05 ACTTGTTTTT TTTTTTTT TTTTTTGTTT chr10:15135012-15135092 26 3.89e-05 gGCTTCCCtt tttttttt tttttttttt chr11:7716049-7716129 1 3.89e-05 . tttttttt AAAGTAAGGA chr16:49034591-49034671 67 3.89e-05 GAGACCCttt tttttttt tttttt chr6:141884119-141884199 73 3.89e-05 ACTTCCACTT TTTTTTTT chr13:96313414-96313494 72 3.89e-05 TATGttcttt tttttttt t chr2:231025021-231025101 72 3.89e-05 GCTACACttt tttttttt t chr4:79593094-79593174 26 3.89e-05 cttctgcctt tttttttt tccctgtaaa chr1:204256336-204256416 29 3.89e-05 TCTCCCTCTT TTTTTTTT TTTTTAAATC chr7:27960928-27961008 31 3.89e-05 AGTATCTTTT TTTTTTTT TTTCCTTTTT chr7:66949371-66949451 73 3.89e-05 AGCTGAGCtt tttttttt chr17:4314623-4314703 35 3.89e-05 tttttttttt tttttttt gagataggat chr12:65176134-65176214 41 3.89e-05 TGAAGATTTT TTTTTTTT TTCCCCAGCT chr9:75815771-75815851 73 3.89e-05 GGGTTGTGTA tttttttt chr5:35003622-35003702 64 3.89e-05 TCTCCGCCTT TTTTTTTT TTGTACCCG chr8:76314414-76314494 70 3.89e-05 TGTCACCttt tttttttt ttt chr3:18430752-18430832 2 3.89e-05 G TTTTTTTT TTTTTTTTTT chr2:113896131-113896211 70 3.89e-05 AGTGTTTTTG tttttttt ttt chr20:56169493-56169573 7 3.89e-05 GGGCCT TTTTTTTT TTTTGCAAAA chr18:19770943-19771023 30 3.89e-05 TAGACTTCCT TTTTTTTT TTTTTTAAAT chr10:85786673-85786753 28 3.89e-05 GAAAAGCTTT TTTttttt tttttctgcc chr7:18395916-18395996 69 3.89e-05 ACATAGGttt tttttttt tttt chr3:48957382-48957462 33 3.89e-05 AAAttttttt tttttttt tttttggtgg chr12:112383187-11238326 54 3.89e-05 ATCTGTTAGA TTTTTTTT CAGCCCTCAT chr19:47343905-47343985 73 3.89e-05 GTCTTCGGCA tttttttt chr2:30937107-30937187 73 3.89e-05 AGTGGCCAGA tttttttt chr17:73168043-73168123 66 3.89e-05 ATTGCGCCtt tttttttt tttttga chr5:123006822-123006902 72 3.89e-05 GAACTTCAAt tttttttt t chr11:3887591-3887671 72 3.89e-05 CTATGTCttt tttttttt t chr12:67749763-67749843 1 3.89e-05 . tttttttt tttttttttG chr9:96923333-96923413 46 3.89e-05 CAGCCTCCAC tttttttt ttttcaggtg chr17:7816415-7816495 72 3.89e-05 AAAGGCACAC tttttttt t chr15:40509552-40509632 67 3.89e-05 CCAAGGTACC TTTTTTTT TTAAAG chr7:22605073-22605153 38 3.89e-05 CAGTCTTTTT TTTTTTTT TCCCCCCCCC chr11:93905000-93905080 73 3.89e-05 GAGAACTGGC TTTTTTTT chr3:183613176-183613256 71 3.89e-05 CCCGCTTCAC tttttttt tt chr20:3096332-3096412 71 3.89e-05 ACGCTCCttt tttttttt tt chr9:124049918-124049998 43 3.89e-05 GCGTGTGGGC TTTTTTTT TCTTTTTttt chr7:28429182-28429262 70 3.89e-05 TATACTAAAC TTTTTTTT TTT chr1:230404809-230404889 73 3.89e-05 CTCAGAGAAA TTTTtttt chr13:33243348-33243428 69 3.89e-05 CAAGCCAGTT TTTTTTTT TCTT chr11:58513178-58513258 41 3.89e-05 tttttttttt tttttttt ttttttttct chr12:106780141-10678022 68 3.89e-05 CAAAGGACTT TTTTTTTT AGAAA chr4:175286336-175286416 66 3.89e-05 tttgtttttt tttttttt ttttttt chr3:186307136-186307216 73 3.89e-05 CCCAGACCTG tttttttt chr3:148673416-148673496 73 3.89e-05 GCTAATGGtt tttttttt chrX:23802652-23802732 39 3.89e-05 ATGCCttttt tttttttt tttttttGGC chr12:95638333-95638413 35 3.89e-05 TCTTGCCTCt tttttttt ttttctgaga chr14:55204235-55204315 28 3.89e-05 TCTCTCTCTT TTTTTTTT TTTTTTTTTG chr17:20020134-20020214 2 3.89e-05 t tttttttt tttggctgtc chr2:10188963-10189043 73 3.89e-05 CGTTTCATCC tttttttt chr11:65130120-65130200 26 3.89e-05 TGGTTTGCCt tttttttt tttttttttt chr11:31418962-31419042 63 3.89e-05 ACCTTTGTGA TTTTTTTT TTTTTTTTCA chr9:94489685-94489765 1 3.89e-05 . TTTTTTTT TTTTAAATCA chr2:4007049-4007129 67 3.89e-05 CGACCATCAG tttttttt tttttt chr6:87776301-87776381 2 3.89e-05 T TTTTTTTT AAGGTTTTTG chr9:114360206-114360286 73 3.89e-05 GGTGCGTTTT TTTTTTTT chr10:7914109-7914189 70 3.89e-05 TGGGTTGAtt tttttttt ttt chr19:17981240-17981320 70 3.89e-05 AGCCCttttt tttttttt ttt chr6:16317065-16317145 37 3.89e-05 CTGTCttttt tttttttt tttttttttt chr11:66789334-66789414 70 6.99e-05 AGCTCTCTTT CTTttttt ctt chr19:18383350-18383430 73 6.99e-05 attgtgctca cttttttt chr14:35908145-35908225 73 6.99e-05 CCCTTTTCTG CTTTtttt chr18:8696946-8697026 73 6.99e-05 GCCCCACCTG CTTTTTTT chr6:7144005-7144085 67 6.99e-05 TCACTGCAGC Cttttttt ctttct chr4:130284005-130284085 73 6.99e-05 CTTTTCTTTT CTTTTTTT chr4:74519495-74519575 73 6.99e-05 GTGACGTAAA Cttttttt chrX:52004686-52004766 26 1.01e-04 TTCCGCGGCA TTTTTTTC AAGCAAGAAG chrX:130947315-130947395 26 1.01e-04 TTAGTGGTGG TTTTTTTC AGATGGAATG chr17:58220415-58220495 57 1.01e-04 CACAAGCACA TTTTTTTC TCACACGCTG chrX:130880569-130880649 23 1.01e-04 CTGGGTGGCG TTTTTTTC AGCCAGGAAG chr6:31797848-31797928 72 1.32e-04 TACGAGtttg tttgtttt t chr3:32440681-32440761 71 1.32e-04 tatggaacct tttgtttt tt chr1:214801651-214801731 73 1.62e-04 GTGGTGCAAG GTTTTTTT chr8:127836792-127836872 59 1.62e-04 TTTGAAAGTG Gttttttt gtttttgttt chr6:160141800-160141880 69 1.93e-04 tacaggtgta ttttcttt acct chr12:49147383-49147463 72 1.93e-04 TTGTTCTGGC TTTTCTTT A chr19:40257482-40257562 73 2.31e-04 GCATCAGCGA TAtttttt chr1:220164496-220164576 17 2.31e-04 CTCAAACAGC TATTTTTT CAGCAGCCAC chrX:115057273-115057353 23 2.99e-04 CCTTCCCTGG TGTTTTTT CATCCACAAA chr2:216134720-216134800 61 2.99e-04 GGTGTCTACA ATTTTTTT AAGTCATTCC chr1:20539473-20539553 23 3.24e-04 GCAACTGGGG CTTTTTTC TCTCTTCCAC chr7:65496005-65496085 52 3.48e-04 TGCCACATGT CTTGTTTT GAAGTGGAAA -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTTTTTTT MEME-2 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr3:10024764-10024844 3.9e-05 70_[+2]_2 chr3:33436281-33436361 3.9e-05 36_[+2]_36 chr3:8936371-8936451 3.9e-05 72_[+2] chr10:7453003-7453083 3.9e-05 28_[+2]_44 chr2:180990379-180990459 3.9e-05 2_[+2]_70 chr4:13658247-13658327 3.9e-05 3_[+2]_69 chr15:72036414-72036494 3.9e-05 72_[+2] chr1:226738264-226738344 3.9e-05 39_[+2]_33 chr5:55232101-55232181 3.9e-05 72_[+2] chr17:63058842-63058922 3.9e-05 33_[+2]_39 chr9:112666011-112666091 3.9e-05 66_[+2]_6 chr6:80578017-80578097 3.9e-05 63_[+2]_9 chr20:57468088-57468168 3.9e-05 33_[+2]_39 chr2:43804586-43804666 3.9e-05 64_[+2]_8 chr12:54585435-54585515 3.9e-05 31_[+2]_41 chr10:15135012-15135092 3.9e-05 25_[+2]_47 chr11:7716049-7716129 3.9e-05 [+2]_72 chr16:49034591-49034671 3.9e-05 66_[+2]_6 chr6:141884119-141884199 3.9e-05 72_[+2] chr13:96313414-96313494 3.9e-05 71_[+2]_1 chr2:231025021-231025101 3.9e-05 71_[+2]_1 chr4:79593094-79593174 3.9e-05 25_[+2]_47 chr1:204256336-204256416 3.9e-05 28_[+2]_44 chr7:27960928-27961008 3.9e-05 30_[+2]_42 chr7:66949371-66949451 3.9e-05 72_[+2] chr17:4314623-4314703 3.9e-05 34_[+2]_38 chr12:65176134-65176214 3.9e-05 40_[+2]_32 chr9:75815771-75815851 3.9e-05 72_[+2] chr5:35003622-35003702 3.9e-05 63_[+2]_9 chr8:76314414-76314494 3.9e-05 69_[+2]_3 chr3:18430752-18430832 3.9e-05 1_[+2]_71 chr2:113896131-113896211 3.9e-05 69_[+2]_3 chr20:56169493-56169573 3.9e-05 6_[+2]_66 chr18:19770943-19771023 3.9e-05 29_[+2]_43 chr10:85786673-85786753 3.9e-05 27_[+2]_45 chr7:18395916-18395996 3.9e-05 68_[+2]_4 chr3:48957382-48957462 3.9e-05 32_[+2]_40 chr12:112383187-11238326 3.9e-05 53_[+2]_19 chr19:47343905-47343985 3.9e-05 72_[+2] chr2:30937107-30937187 3.9e-05 72_[+2] chr17:73168043-73168123 3.9e-05 65_[+2]_7 chr5:123006822-123006902 3.9e-05 71_[+2]_1 chr11:3887591-3887671 3.9e-05 71_[+2]_1 chr12:67749763-67749843 3.9e-05 [+2]_72 chr9:96923333-96923413 3.9e-05 45_[+2]_27 chr17:7816415-7816495 3.9e-05 71_[+2]_1 chr15:40509552-40509632 3.9e-05 66_[+2]_6 chr7:22605073-22605153 3.9e-05 37_[+2]_35 chr11:93905000-93905080 3.9e-05 72_[+2] chr3:183613176-183613256 3.9e-05 70_[+2]_2 chr20:3096332-3096412 3.9e-05 70_[+2]_2 chr9:124049918-124049998 3.9e-05 42_[+2]_30 chr7:28429182-28429262 3.9e-05 69_[+2]_3 chr1:230404809-230404889 3.9e-05 72_[+2] chr13:33243348-33243428 3.9e-05 68_[+2]_4 chr11:58513178-58513258 3.9e-05 40_[+2]_32 chr12:106780141-10678022 3.9e-05 67_[+2]_5 chr4:175286336-175286416 3.9e-05 65_[+2]_7 chr3:186307136-186307216 3.9e-05 72_[+2] chr3:148673416-148673496 3.9e-05 72_[+2] chrX:23802652-23802732 3.9e-05 38_[+2]_34 chr12:95638333-95638413 3.9e-05 34_[+2]_38 chr14:55204235-55204315 3.9e-05 27_[+2]_45 chr17:20020134-20020214 3.9e-05 1_[+2]_71 chr2:10188963-10189043 3.9e-05 72_[+2] chr11:65130120-65130200 3.9e-05 25_[+2]_47 chr11:31418962-31419042 3.9e-05 62_[+2]_10 chr9:94489685-94489765 3.9e-05 [+2]_72 chr2:4007049-4007129 3.9e-05 66_[+2]_6 chr6:87776301-87776381 3.9e-05 1_[+2]_71 chr9:114360206-114360286 3.9e-05 72_[+2] chr10:7914109-7914189 3.9e-05 69_[+2]_3 chr19:17981240-17981320 3.9e-05 69_[+2]_3 chr6:16317065-16317145 3.9e-05 36_[+2]_36 chr11:66789334-66789414 7e-05 69_[+2]_3 chr19:18383350-18383430 7e-05 72_[+2] chr14:35908145-35908225 7e-05 72_[+2] chr18:8696946-8697026 7e-05 72_[+2] chr6:7144005-7144085 7e-05 66_[+2]_6 chr4:130284005-130284085 7e-05 72_[+2] chr4:74519495-74519575 7e-05 72_[+2] chrX:52004686-52004766 0.0001 25_[+2]_47 chrX:130947315-130947395 0.0001 25_[+2]_47 chr17:58220415-58220495 0.0001 56_[+2]_16 chrX:130880569-130880649 0.0001 22_[+2]_50 chr6:31797848-31797928 0.00013 71_[+2]_1 chr3:32440681-32440761 0.00013 70_[+2]_2 chr1:214801651-214801731 0.00016 72_[+2] chr8:127836792-127836872 0.00016 58_[+2]_14 chr6:160141800-160141880 0.00019 68_[+2]_4 chr12:49147383-49147463 0.00019 71_[+2]_1 chr19:40257482-40257562 0.00023 72_[+2] chr1:220164496-220164576 0.00023 16_[+2]_56 chrX:115057273-115057353 0.0003 22_[+2]_50 chr2:216134720-216134800 0.0003 60_[+2]_12 chr1:20539473-20539553 0.00032 22_[+2]_50 chr7:65496005-65496085 0.00035 51_[+2]_21 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTTTTTTT MEME-2 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF TTTTTTTT width=8 seqs=97 chr3:10024764-10024844 ( 71) TTTTTTTT 1 chr3:33436281-33436361 ( 37) TTTTTTTT 1 chr3:8936371-8936451 ( 73) TTTTTTTT 1 chr10:7453003-7453083 ( 29) TTTTTTTT 1 chr2:180990379-180990459 ( 3) TTTTTTTT 1 chr4:13658247-13658327 ( 4) TTTTTTTT 1 chr15:72036414-72036494 ( 73) TTTTTTTT 1 chr1:226738264-226738344 ( 40) TTTTTTTT 1 chr5:55232101-55232181 ( 73) TTTTTTTT 1 chr17:63058842-63058922 ( 34) TTTTTTTT 1 chr9:112666011-112666091 ( 67) TTTTTTTT 1 chr6:80578017-80578097 ( 64) TTTTTTTT 1 chr20:57468088-57468168 ( 34) TTTTTTTT 1 chr2:43804586-43804666 ( 65) TTTTTTTT 1 chr12:54585435-54585515 ( 32) TTTTTTTT 1 chr10:15135012-15135092 ( 26) TTTTTTTT 1 chr11:7716049-7716129 ( 1) TTTTTTTT 1 chr16:49034591-49034671 ( 67) TTTTTTTT 1 chr6:141884119-141884199 ( 73) TTTTTTTT 1 chr13:96313414-96313494 ( 72) TTTTTTTT 1 chr2:231025021-231025101 ( 72) TTTTTTTT 1 chr4:79593094-79593174 ( 26) TTTTTTTT 1 chr1:204256336-204256416 ( 29) TTTTTTTT 1 chr7:27960928-27961008 ( 31) TTTTTTTT 1 chr7:66949371-66949451 ( 73) TTTTTTTT 1 chr17:4314623-4314703 ( 35) TTTTTTTT 1 chr12:65176134-65176214 ( 41) TTTTTTTT 1 chr9:75815771-75815851 ( 73) TTTTTTTT 1 chr5:35003622-35003702 ( 64) TTTTTTTT 1 chr8:76314414-76314494 ( 70) TTTTTTTT 1 chr3:18430752-18430832 ( 2) TTTTTTTT 1 chr2:113896131-113896211 ( 70) TTTTTTTT 1 chr20:56169493-56169573 ( 7) TTTTTTTT 1 chr18:19770943-19771023 ( 30) TTTTTTTT 1 chr10:85786673-85786753 ( 28) TTTTTTTT 1 chr7:18395916-18395996 ( 69) TTTTTTTT 1 chr3:48957382-48957462 ( 33) TTTTTTTT 1 chr12:112383187-11238326 ( 54) TTTTTTTT 1 chr19:47343905-47343985 ( 73) TTTTTTTT 1 chr2:30937107-30937187 ( 73) TTTTTTTT 1 chr17:73168043-73168123 ( 66) TTTTTTTT 1 chr5:123006822-123006902 ( 72) TTTTTTTT 1 chr11:3887591-3887671 ( 72) TTTTTTTT 1 chr12:67749763-67749843 ( 1) TTTTTTTT 1 chr9:96923333-96923413 ( 46) TTTTTTTT 1 chr17:7816415-7816495 ( 72) TTTTTTTT 1 chr15:40509552-40509632 ( 67) TTTTTTTT 1 chr7:22605073-22605153 ( 38) TTTTTTTT 1 chr11:93905000-93905080 ( 73) TTTTTTTT 1 chr3:183613176-183613256 ( 71) TTTTTTTT 1 chr20:3096332-3096412 ( 71) TTTTTTTT 1 chr9:124049918-124049998 ( 43) TTTTTTTT 1 chr7:28429182-28429262 ( 70) TTTTTTTT 1 chr1:230404809-230404889 ( 73) TTTTTTTT 1 chr13:33243348-33243428 ( 69) TTTTTTTT 1 chr11:58513178-58513258 ( 41) TTTTTTTT 1 chr12:106780141-10678022 ( 68) TTTTTTTT 1 chr4:175286336-175286416 ( 66) TTTTTTTT 1 chr3:186307136-186307216 ( 73) TTTTTTTT 1 chr3:148673416-148673496 ( 73) TTTTTTTT 1 chrX:23802652-23802732 ( 39) TTTTTTTT 1 chr12:95638333-95638413 ( 35) TTTTTTTT 1 chr14:55204235-55204315 ( 28) TTTTTTTT 1 chr17:20020134-20020214 ( 2) TTTTTTTT 1 chr2:10188963-10189043 ( 73) TTTTTTTT 1 chr11:65130120-65130200 ( 26) TTTTTTTT 1 chr11:31418962-31419042 ( 63) TTTTTTTT 1 chr9:94489685-94489765 ( 1) TTTTTTTT 1 chr2:4007049-4007129 ( 67) TTTTTTTT 1 chr6:87776301-87776381 ( 2) TTTTTTTT 1 chr9:114360206-114360286 ( 73) TTTTTTTT 1 chr10:7914109-7914189 ( 70) TTTTTTTT 1 chr19:17981240-17981320 ( 70) TTTTTTTT 1 chr6:16317065-16317145 ( 37) TTTTTTTT 1 chr11:66789334-66789414 ( 70) CTTTTTTT 1 chr19:18383350-18383430 ( 73) CTTTTTTT 1 chr14:35908145-35908225 ( 73) CTTTTTTT 1 chr18:8696946-8697026 ( 73) CTTTTTTT 1 chr6:7144005-7144085 ( 67) CTTTTTTT 1 chr4:130284005-130284085 ( 73) CTTTTTTT 1 chr4:74519495-74519575 ( 73) CTTTTTTT 1 chrX:52004686-52004766 ( 26) TTTTTTTC 1 chrX:130947315-130947395 ( 26) TTTTTTTC 1 chr17:58220415-58220495 ( 57) TTTTTTTC 1 chrX:130880569-130880649 ( 23) TTTTTTTC 1 chr6:31797848-31797928 ( 72) TTTGTTTT 1 chr3:32440681-32440761 ( 71) TTTGTTTT 1 chr1:214801651-214801731 ( 73) GTTTTTTT 1 chr8:127836792-127836872 ( 59) GTTTTTTT 1 chr6:160141800-160141880 ( 69) TTTTCTTT 1 chr12:49147383-49147463 ( 72) TTTTCTTT 1 chr19:40257482-40257562 ( 73) TATTTTTT 1 chr1:220164496-220164576 ( 17) TATTTTTT 1 chrX:115057273-115057353 ( 23) TGTTTTTT 1 chr2:216134720-216134800 ( 61) ATTTTTTT 1 chr1:20539473-20539553 ( 23) CTTTTTTC 1 chr7:65496005-65496085 ( 52) CTTGTTTT 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTTTTTTT MEME-2 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 18250 bayes= 9.14407 E= 2.2e-113 -472 -127 -343 164 -372 -1324 -443 178 -1324 -1324 -1324 183 -1324 -1324 -284 178 -1324 -344 -1324 180 -1324 -1324 -1324 183 -1324 -1324 -1324 183 -1324 -212 -1324 175 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTTTTTTT MEME-2 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 97 E= 2.2e-113 0.010309 0.092784 0.020619 0.876289 0.020619 0.000000 0.010309 0.969072 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.030928 0.969072 0.000000 0.020619 0.000000 0.979381 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.051546 0.000000 0.948454 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTTTTTTT MEME-2 regular expression -------------------------------------------------------------------------------- TTTTTTTT -------------------------------------------------------------------------------- Time 8.58 secs. ******************************************************************************** ******************************************************************************** MOTIF AGRKGGCR MEME-3 width = 8 sites = 97 llr = 751 E-value = 3.2e-053 ******************************************************************************** -------------------------------------------------------------------------------- Motif AGRKGGCR MEME-3 Description -------------------------------------------------------------------------------- Simplified A 8:5:::35 pos.-specific C ::::::6: probability G 2a45aa:5 matrix T ::15::1: bits 2.2 * ** 2.0 * ** 1.7 * ** 1.5 * ** Relative 1.3 ** ** Entropy 1.1 ** ** * (11.2 bits) 0.9 ** ***** 0.7 ******** 0.4 ******** 0.2 ******** 0.0 -------- Multilevel AGAGGGCG consensus GT AA sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AGRKGGCR MEME-3 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr3:10024764-10024844 44 7.29e-06 ACTGCCCTGT AGGGGGCG TAATGGTAAT chr16:49034591-49034671 44 7.29e-06 CCTGGCCACA AGGGGGCG TAAAAGAGAC chr1:214801651-214801731 31 1.62e-05 GAGTGCCAGT AGAGGGCG CCACGGGTTC chr17:58220415-58220495 3 1.62e-05 GC AGAGGGCG CCAATGTGGT chr19:1218147-1218227 56 1.62e-05 ATGACAGACT AGAGGGCG CTGTGCTCCC chr20:33684165-33684245 29 1.62e-05 TCTCACCACC AGAGGGCG AAGTACCTCT chr8:127836792-127836872 32 1.62e-05 CATTACCAGC AGAGGGCG CCAGAGCCCT chr7:28429182-28429262 35 1.62e-05 AACTTCCTGT AGAGGGCG CTATTGATAT chr12:116504573-11650465 45 1.62e-05 GGCTACCAAC AGAGGGCG AAAGCGGTCA chr6:43037852-43037932 39 1.62e-05 aaaatcccct agagggcg atactgtccc chr7:6036990-6037070 29 2.52e-05 CGGAGTCACT AGGGGGCA GCTGAACAAA chr8:17434510-17434590 48 2.52e-05 CGGCTCCGCC AGGGGGCA GGAGAAGTCA chrX:134099541-134099621 36 2.52e-05 ACAAGCCACT AGGGGGCA AAGCTGCTTT chr9:94489685-94489765 69 2.52e-05 AGAAAGGTAC AGGGGGCA CACC chr6:16317065-16317145 6 2.52e-05 ACAAC AGGGGGCA ATAGAGAGAC chr7:35464638-35464718 31 4.53e-05 CCCACCCAGC AGAGGGCA GTGCAGTGCA chr7:105405723-105405803 7 4.53e-05 gaccag aggtggcg ccactgcact chr12:97380872-97380952 44 4.53e-05 TGCCACCTCC AGAGGGCA CAGCTGTCTC chr7:18395916-18395996 49 4.53e-05 TGTAGCCTCT AGAGGGCA GCACATAGGt chr7:90718827-90718907 36 4.53e-05 TGTGGCCTGT AGAGGGCA GCATGCTCTG chr12:67749763-67749843 43 4.53e-05 TTCTTCCAGG AGGTGGCG ATAGAACATC chr19:13305473-13305553 30 4.53e-05 TCTGGCCTCC AGGTGGCG CTGTCGACTG chr11:93905000-93905080 41 4.53e-05 GGCACCCAGT AGGTGGCG CTCTAACACT chr3:183613176-183613256 29 4.53e-05 TCTGGTCAGG AGAGGGCA GGAGAAGGCA chr3:127415163-127415243 48 4.53e-05 TCAGGCCCAT AGAGGGCA GGAGTGAGCC chr12:49147383-49147463 51 4.53e-05 AGACTCCAGC AGAGGGCA CTGTTGTTCT chr21:28221905-28221985 39 4.53e-05 TCCAAACACA AGGTGGCG ATGGTCTACA chr19:11047462-11047542 37 4.53e-05 AAAGACCAGC AGAGGGCA TCAGAGACTT chr12:106780141-10678022 33 4.53e-05 CATCTCCAGC AGAGGGCA GTATGTTCCC chr3:186307136-186307216 19 4.53e-05 GTTTGTGTGA AGGTGGCG CTAAAATAAT chr3:148673416-148673496 34 4.53e-05 CCGAACCAGA AGAGGGCA CTCTTACCAC chr10:7914109-7914189 29 4.53e-05 GTTTACCAGT AGAGGGCA CTGTTGTAAC chr16:75594056-75594136 72 5.67e-05 CAGTGTCAGG AGATGGCG T chr5:55232101-55232181 23 5.67e-05 ACAGGCCACA AGATGGCG CAGCACCTCC chr1:20539473-20539553 42 5.67e-05 CTCTTCCACT AGATGGCG CTGTGTCTCC chr8:72740268-72740348 53 5.67e-05 ATTTACCACG AGATGGCG CGCTAATGAC chr19:10369806-10369886 47 5.67e-05 cacagccaca agatggcg acatgagcct chr1:151168950-151169030 3 6.80e-05 GC AGGTGGCA GCAGGGAAAC chr15:72036414-72036494 35 6.80e-05 TGTTGCCACC AGGTGGCA GCAGAGAAAG chr15:40971440-40971520 1 6.80e-05 . aggtggca gtgtggtgct chr8:25027825-25027905 39 6.80e-05 CTACAACAGC AGGTGGCA CTAGCACCAT chr17:5100402-5100482 40 6.80e-05 ATACACCACT AGGTGGCA GTGATTTGCA chr19:15202824-15202904 34 6.80e-05 AGTGGCCACT AGGTGGCA ATAATGTCAT chr11:31418962-31419042 23 6.80e-05 ACTAAGCAAT AGGTGGCA GTAGTGTGTT chr2:180990379-180990459 36 8.18e-05 GAAGGCAGCC AGATGGCA GCATCGTTCC chr8:76314414-76314494 20 8.18e-05 TATGCCCACT AGATGGCA GGTATAGGAC chr4:130284005-130284085 30 8.18e-05 CCATGCCACT AGATGGCA GCAGCACTCT chr13:20771622-20771702 36 8.18e-05 AGCGCACAGT AGATGGCA CTGAGACTTG chr4:13658247-13658327 44 9.07e-05 TCCAGGCAGC AGGGGGAG GTGTTTCTCT chr20:32400915-32400995 50 9.07e-05 aaaaaaaaaa agggggag gagccttctg chr8:37248123-37248203 44 9.07e-05 CTGGGCCAGA AGGGGGAG GCTGAAGGAA chr1:27136679-27136759 39 1.02e-04 aagggccacc agagggag acagtgaagc chr22:19378089-19378169 18 1.02e-04 gctgggcaat agagggag actctgtctc chr8:117484096-117484176 20 1.26e-04 CAAACACTGG AGGGGGAA AAAAAAAAAA chr9:114360206-114360286 33 1.26e-04 GAAAACCACC GGAGGGCG CCGCTGCTCC chr12:112383187-11238326 21 1.50e-04 TACGCCCAGT AGAGGGAA CCAGGATGTC chr9:96923333-96923413 59 1.50e-04 tttttttttc aggtggag tctccctctc chr12:108070177-10807025 31 1.50e-04 AGTGTCCACT AGGTGGAG CCACACTTCT chr4:2406058-2406138 4 1.71e-04 tga agatggag ctacacagta chr1:46872145-46872225 46 1.71e-04 GACGGCCACC AGATGGAG CCCTTGCCTG chr9:75815771-75815851 24 1.71e-04 TTTCACCACT AGATGGAG ATATTGCCAT chr12:113634920-11363500 17 1.71e-04 TGTGGACACT AGATGGAG CCATGATCAT chr2:11969506-11969586 30 1.71e-04 AATGGCCACC GGGGGGCA CAGTCGCTTT chrX:130880569-130880649 15 1.88e-04 CTTTGTCTCT GGGTGGCG TTTTTTTCAG chr7:66949371-66949451 8 2.11e-04 TTGCAGC AGGTGGAA TTCCTGACTT chrX:130947315-130947395 34 2.46e-04 GGTTTTTTTC AGATGGAA TGGGAGGGAG chr12:111712761-11171284 52 2.46e-04 TAGTGGTGAA AGATGGAA TAGGCGAAGT chr19:28957164-28957244 50 2.46e-04 GCATTCCACC AGGGGGTG CTGTTTGACA chr1:220164496-220164576 36 2.46e-04 AGCAGCCACT AGATGGAA ACATTTCTCC chr15:59983567-59983647 45 2.66e-04 ATTCCCCACA GGGTGGCA GAAAATCACT chr3:169907039-169907119 46 2.66e-04 ATATACCAGT GGGTGGCA CTGTACACAG chr4:175286336-175286416 13 2.66e-04 AACAACCACT GGGTGGCA GTAAAGGCTT chrX:23802652-23802732 17 2.66e-04 ACACCAGTTA AGAGGGTG TCAGATGCCt chr16:15850564-15850644 45 3.00e-04 GCCGCCCCCT AGTGGGCA ACACGCAGGC chr3:27722824-27722904 43 3.00e-04 CCTGCCCTCT AGTGGGCA ACGAAAAGAA chr20:47521689-47521769 25 3.37e-04 AAACAGGACC AGGTGGTG AGTCTAGTTG chr1:20760722-20760802 42 3.37e-04 ACTCCCAGGG AGGTGGTG CTGTCGGGTA chr12:93221779-93221859 24 3.37e-04 AGCTTCCCCT AGTTGGCG CTCTGTCTCC chr19:17981240-17981320 1 3.37e-04 . AGAGGGTA GGCCAGAGGA chrX:52004686-52004766 47 3.59e-04 CAAGAAGGGC GGGGGGAG AGGCGAGTTG chr7:65496005-65496085 36 3.59e-04 AAGGTCCACT AGATGGTG CCACATGTCT chr15:40509552-40509632 26 3.67e-04 ATTAACCACT GGAGGGAG TTGTTGGCAT chrX:115057273-115057353 45 3.67e-04 CACAAAGGGT GGAGGGAG AGGCCTGGTA chr11:86002966-86003046 69 3.96e-04 CCTGCTGGAG AGTTGGCA AAAT chr1:90007305-90007385 47 4.22e-04 AAGTTAAGGC AGATGGTA GGCAGGATAA chr19:7633468-7633548 13 4.51e-04 TCTGGCTCCG GGGTGGAG CTTTGCTGAC chr11:45315296-45315376 51 4.51e-04 CGGAGGATGT GGAGGGAA ATGAATCCTC chr19:38625373-38625453 26 4.51e-04 CTTGGCCTAT AGGAGGCG CTCGAGAGAC chr6:87776301-87776381 36 4.51e-04 CATTGCCACT GGGTGGAG CTCAAAGTCC chr2:86595592-86595672 72 4.51e-04 GTGGGTGGGA AGGAGGCG G chr14:35908145-35908225 55 4.84e-04 AGCTGCCTAT AGTGGGAG CCCTTTTCTG chr16:4598891-4598971 6 4.84e-04 agaaa aGTGGGAG CTCTTCCACT chr11:72002001-72002081 35 5.07e-04 accctccgct aggaggca ctaagaatag chr1:55750605-55750685 33 5.49e-04 TCTTGGCACT GGGGGGTG CTGTTGGATA chr3:48957382-48957462 46 5.49e-04 tttttttttt ggtgggcg ggacaaagtt chr9:73027075-73027155 1 5.72e-04 . GGAGGGTG CGACCTAAGT chr17:71206644-71206724 55 5.72e-04 CTCTCAAAGG GGAGGGTG ACACGAAGGA -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AGRKGGCR MEME-3 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr3:10024764-10024844 7.3e-06 43_[+3]_29 chr16:49034591-49034671 7.3e-06 43_[+3]_29 chr1:214801651-214801731 1.6e-05 30_[+3]_42 chr17:58220415-58220495 1.6e-05 2_[+3]_70 chr19:1218147-1218227 1.6e-05 55_[+3]_17 chr20:33684165-33684245 1.6e-05 28_[+3]_44 chr8:127836792-127836872 1.6e-05 31_[+3]_41 chr7:28429182-28429262 1.6e-05 34_[+3]_38 chr12:116504573-11650465 1.6e-05 44_[+3]_28 chr6:43037852-43037932 1.6e-05 38_[+3]_34 chr7:6036990-6037070 2.5e-05 28_[+3]_44 chr8:17434510-17434590 2.5e-05 47_[+3]_25 chrX:134099541-134099621 2.5e-05 35_[+3]_37 chr9:94489685-94489765 2.5e-05 68_[+3]_4 chr6:16317065-16317145 2.5e-05 5_[+3]_67 chr7:35464638-35464718 4.5e-05 30_[+3]_42 chr7:105405723-105405803 4.5e-05 6_[+3]_66 chr12:97380872-97380952 4.5e-05 43_[+3]_29 chr7:18395916-18395996 4.5e-05 48_[+3]_24 chr7:90718827-90718907 4.5e-05 35_[+3]_37 chr12:67749763-67749843 4.5e-05 42_[+3]_30 chr19:13305473-13305553 4.5e-05 29_[+3]_43 chr11:93905000-93905080 4.5e-05 40_[+3]_32 chr3:183613176-183613256 4.5e-05 28_[+3]_44 chr3:127415163-127415243 4.5e-05 47_[+3]_25 chr12:49147383-49147463 4.5e-05 50_[+3]_22 chr21:28221905-28221985 4.5e-05 38_[+3]_34 chr19:11047462-11047542 4.5e-05 36_[+3]_36 chr12:106780141-10678022 4.5e-05 32_[+3]_40 chr3:186307136-186307216 4.5e-05 18_[+3]_54 chr3:148673416-148673496 4.5e-05 33_[+3]_39 chr10:7914109-7914189 4.5e-05 28_[+3]_44 chr16:75594056-75594136 5.7e-05 71_[+3]_1 chr5:55232101-55232181 5.7e-05 22_[+3]_50 chr1:20539473-20539553 5.7e-05 41_[+3]_31 chr8:72740268-72740348 5.7e-05 52_[+3]_20 chr19:10369806-10369886 5.7e-05 46_[+3]_26 chr1:151168950-151169030 6.8e-05 2_[+3]_70 chr15:72036414-72036494 6.8e-05 34_[+3]_38 chr15:40971440-40971520 6.8e-05 [+3]_72 chr8:25027825-25027905 6.8e-05 38_[+3]_34 chr17:5100402-5100482 6.8e-05 39_[+3]_33 chr19:15202824-15202904 6.8e-05 33_[+3]_39 chr11:31418962-31419042 6.8e-05 22_[+3]_50 chr2:180990379-180990459 8.2e-05 35_[+3]_37 chr8:76314414-76314494 8.2e-05 19_[+3]_53 chr4:130284005-130284085 8.2e-05 29_[+3]_43 chr13:20771622-20771702 8.2e-05 35_[+3]_37 chr4:13658247-13658327 9.1e-05 43_[+3]_29 chr20:32400915-32400995 9.1e-05 49_[+3]_23 chr8:37248123-37248203 9.1e-05 43_[+3]_29 chr1:27136679-27136759 0.0001 38_[+3]_34 chr22:19378089-19378169 0.0001 17_[+3]_55 chr8:117484096-117484176 0.00013 19_[+3]_53 chr9:114360206-114360286 0.00013 32_[+3]_40 chr12:112383187-11238326 0.00015 20_[+3]_52 chr9:96923333-96923413 0.00015 58_[+3]_14 chr12:108070177-10807025 0.00015 30_[+3]_42 chr4:2406058-2406138 0.00017 3_[+3]_69 chr1:46872145-46872225 0.00017 45_[+3]_27 chr9:75815771-75815851 0.00017 23_[+3]_49 chr12:113634920-11363500 0.00017 16_[+3]_56 chr2:11969506-11969586 0.00017 29_[+3]_43 chrX:130880569-130880649 0.00019 14_[+3]_58 chr7:66949371-66949451 0.00021 7_[+3]_65 chrX:130947315-130947395 0.00025 33_[+3]_39 chr12:111712761-11171284 0.00025 51_[+3]_21 chr19:28957164-28957244 0.00025 49_[+3]_23 chr1:220164496-220164576 0.00025 35_[+3]_37 chr15:59983567-59983647 0.00027 44_[+3]_28 chr3:169907039-169907119 0.00027 45_[+3]_27 chr4:175286336-175286416 0.00027 12_[+3]_60 chrX:23802652-23802732 0.00027 16_[+3]_56 chr16:15850564-15850644 0.0003 44_[+3]_28 chr3:27722824-27722904 0.0003 42_[+3]_30 chr20:47521689-47521769 0.00034 24_[+3]_48 chr1:20760722-20760802 0.00034 41_[+3]_31 chr12:93221779-93221859 0.00034 23_[+3]_49 chr19:17981240-17981320 0.00034 [+3]_72 chrX:52004686-52004766 0.00036 46_[+3]_26 chr7:65496005-65496085 0.00036 35_[+3]_37 chr15:40509552-40509632 0.00037 25_[+3]_47 chrX:115057273-115057353 0.00037 44_[+3]_28 chr11:86002966-86003046 0.0004 68_[+3]_4 chr1:90007305-90007385 0.00042 46_[+3]_26 chr19:7633468-7633548 0.00045 12_[+3]_60 chr11:45315296-45315376 0.00045 50_[+3]_22 chr19:38625373-38625453 0.00045 25_[+3]_47 chr6:87776301-87776381 0.00045 35_[+3]_37 chr2:86595592-86595672 0.00045 71_[+3]_1 chr14:35908145-35908225 0.00048 54_[+3]_18 chr16:4598891-4598971 0.00048 5_[+3]_67 chr11:72002001-72002081 0.00051 34_[+3]_38 chr1:55750605-55750685 0.00055 32_[+3]_40 chr3:48957382-48957462 0.00055 45_[+3]_27 chr9:73027075-73027155 0.00057 [+3]_72 chr17:71206644-71206724 0.00057 54_[+3]_18 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AGRKGGCR MEME-3 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF AGRKGGCR width=8 seqs=97 chr3:10024764-10024844 ( 44) AGGGGGCG 1 chr16:49034591-49034671 ( 44) AGGGGGCG 1 chr1:214801651-214801731 ( 31) AGAGGGCG 1 chr17:58220415-58220495 ( 3) AGAGGGCG 1 chr19:1218147-1218227 ( 56) AGAGGGCG 1 chr20:33684165-33684245 ( 29) AGAGGGCG 1 chr8:127836792-127836872 ( 32) AGAGGGCG 1 chr7:28429182-28429262 ( 35) AGAGGGCG 1 chr12:116504573-11650465 ( 45) AGAGGGCG 1 chr6:43037852-43037932 ( 39) AGAGGGCG 1 chr7:6036990-6037070 ( 29) AGGGGGCA 1 chr8:17434510-17434590 ( 48) AGGGGGCA 1 chrX:134099541-134099621 ( 36) AGGGGGCA 1 chr9:94489685-94489765 ( 69) AGGGGGCA 1 chr6:16317065-16317145 ( 6) AGGGGGCA 1 chr7:35464638-35464718 ( 31) AGAGGGCA 1 chr7:105405723-105405803 ( 7) AGGTGGCG 1 chr12:97380872-97380952 ( 44) AGAGGGCA 1 chr7:18395916-18395996 ( 49) AGAGGGCA 1 chr7:90718827-90718907 ( 36) AGAGGGCA 1 chr12:67749763-67749843 ( 43) AGGTGGCG 1 chr19:13305473-13305553 ( 30) AGGTGGCG 1 chr11:93905000-93905080 ( 41) AGGTGGCG 1 chr3:183613176-183613256 ( 29) AGAGGGCA 1 chr3:127415163-127415243 ( 48) AGAGGGCA 1 chr12:49147383-49147463 ( 51) AGAGGGCA 1 chr21:28221905-28221985 ( 39) AGGTGGCG 1 chr19:11047462-11047542 ( 37) AGAGGGCA 1 chr12:106780141-10678022 ( 33) AGAGGGCA 1 chr3:186307136-186307216 ( 19) AGGTGGCG 1 chr3:148673416-148673496 ( 34) AGAGGGCA 1 chr10:7914109-7914189 ( 29) AGAGGGCA 1 chr16:75594056-75594136 ( 72) AGATGGCG 1 chr5:55232101-55232181 ( 23) AGATGGCG 1 chr1:20539473-20539553 ( 42) AGATGGCG 1 chr8:72740268-72740348 ( 53) AGATGGCG 1 chr19:10369806-10369886 ( 47) AGATGGCG 1 chr1:151168950-151169030 ( 3) AGGTGGCA 1 chr15:72036414-72036494 ( 35) AGGTGGCA 1 chr15:40971440-40971520 ( 1) AGGTGGCA 1 chr8:25027825-25027905 ( 39) AGGTGGCA 1 chr17:5100402-5100482 ( 40) AGGTGGCA 1 chr19:15202824-15202904 ( 34) AGGTGGCA 1 chr11:31418962-31419042 ( 23) AGGTGGCA 1 chr2:180990379-180990459 ( 36) AGATGGCA 1 chr8:76314414-76314494 ( 20) AGATGGCA 1 chr4:130284005-130284085 ( 30) AGATGGCA 1 chr13:20771622-20771702 ( 36) AGATGGCA 1 chr4:13658247-13658327 ( 44) AGGGGGAG 1 chr20:32400915-32400995 ( 50) AGGGGGAG 1 chr8:37248123-37248203 ( 44) AGGGGGAG 1 chr1:27136679-27136759 ( 39) AGAGGGAG 1 chr22:19378089-19378169 ( 18) AGAGGGAG 1 chr8:117484096-117484176 ( 20) AGGGGGAA 1 chr9:114360206-114360286 ( 33) GGAGGGCG 1 chr12:112383187-11238326 ( 21) AGAGGGAA 1 chr9:96923333-96923413 ( 59) AGGTGGAG 1 chr12:108070177-10807025 ( 31) AGGTGGAG 1 chr4:2406058-2406138 ( 4) AGATGGAG 1 chr1:46872145-46872225 ( 46) AGATGGAG 1 chr9:75815771-75815851 ( 24) AGATGGAG 1 chr12:113634920-11363500 ( 17) AGATGGAG 1 chr2:11969506-11969586 ( 30) GGGGGGCA 1 chrX:130880569-130880649 ( 15) GGGTGGCG 1 chr7:66949371-66949451 ( 8) AGGTGGAA 1 chrX:130947315-130947395 ( 34) AGATGGAA 1 chr12:111712761-11171284 ( 52) AGATGGAA 1 chr19:28957164-28957244 ( 50) AGGGGGTG 1 chr1:220164496-220164576 ( 36) AGATGGAA 1 chr15:59983567-59983647 ( 45) GGGTGGCA 1 chr3:169907039-169907119 ( 46) GGGTGGCA 1 chr4:175286336-175286416 ( 13) GGGTGGCA 1 chrX:23802652-23802732 ( 17) AGAGGGTG 1 chr16:15850564-15850644 ( 45) AGTGGGCA 1 chr3:27722824-27722904 ( 43) AGTGGGCA 1 chr20:47521689-47521769 ( 25) AGGTGGTG 1 chr1:20760722-20760802 ( 42) AGGTGGTG 1 chr12:93221779-93221859 ( 24) AGTTGGCG 1 chr19:17981240-17981320 ( 1) AGAGGGTA 1 chrX:52004686-52004766 ( 47) GGGGGGAG 1 chr7:65496005-65496085 ( 36) AGATGGTG 1 chr15:40509552-40509632 ( 26) GGAGGGAG 1 chrX:115057273-115057353 ( 45) GGAGGGAG 1 chr11:86002966-86003046 ( 69) AGTTGGCA 1 chr1:90007305-90007385 ( 47) AGATGGTA 1 chr19:7633468-7633548 ( 13) GGGTGGAG 1 chr11:45315296-45315376 ( 51) GGAGGGAA 1 chr19:38625373-38625453 ( 26) AGGAGGCG 1 chr6:87776301-87776381 ( 36) GGGTGGAG 1 chr2:86595592-86595672 ( 72) AGGAGGCG 1 chr14:35908145-35908225 ( 55) AGTGGGAG 1 chr16:4598891-4598971 ( 6) AGTGGGAG 1 chr11:72002001-72002081 ( 35) AGGAGGCA 1 chr1:55750605-55750685 ( 33) GGGGGGTG 1 chr3:48957382-48957462 ( 46) GGTGGGCG 1 chr9:73027075-73027155 ( 1) GGAGGGTG 1 chr17:71206644-71206724 ( 55) GGAGGGTG 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AGRKGGCR MEME-3 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 18250 bayes= 9.46427 E= 3.2e-053 162 -1324 -43 -1324 -1324 -1324 217 -1324 86 -1324 96 -196 -314 -1324 121 69 -1324 -1324 217 -1324 -1324 -1324 217 -1324 -8 151 -1324 -145 74 -1324 130 -1324 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AGRKGGCR MEME-3 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 97 E= 3.2e-053 0.835052 0.000000 0.164948 0.000000 0.000000 0.000000 1.000000 0.000000 0.494845 0.000000 0.432990 0.072165 0.030928 0.000000 0.515464 0.453608 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.257732 0.639175 0.000000 0.103093 0.453608 0.000000 0.546392 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AGRKGGCR MEME-3 regular expression -------------------------------------------------------------------------------- AG[AG][GT]GG[CA][GA] -------------------------------------------------------------------------------- Time 12.15 secs. ******************************************************************************** ******************************************************************************** MOTIF YGCCMYCT MEME-4 width = 8 sites = 88 llr = 692 E-value = 2.3e-047 ******************************************************************************** -------------------------------------------------------------------------------- Motif YGCCMYCT MEME-4 Description -------------------------------------------------------------------------------- Simplified A :11:4::: pos.-specific C 519a66a: probability G :7:::::: matrix T 51:::4:a bits 2.2 * * 2.0 * * 1.7 ** * 1.5 ** ** Relative 1.3 ** ** Entropy 1.1 * ** *** (11.3 bits) 0.9 ******** 0.7 ******** 0.4 ******** 0.2 ******** 0.0 -------- Multilevel TGCCCCCT consensus C AT sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif YGCCMYCT MEME-4 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr11:66789334-66789414 33 7.88e-06 AAGACAAAAG CGCCCCCT GTGGGTGAAG chr1:53152043-53152123 38 7.88e-06 ATGGCAAGCT CGCCCCCT GGTGACAAGC chr11:35843478-35843558 30 7.88e-06 AACGCCTCTG CGCCCCCT AGAGGTTGGA chr3:32440681-32440761 34 7.88e-06 ggggctgtac cgccccct aggggttatt chr5:35003622-35003702 25 7.88e-06 TTTCACTCAG CGCCCCCT AGTGGCCTGA chr10:81227285-81227365 51 7.88e-06 TGTTCTCCAG CGCCCCCT ATGGGGGATC chr16:15850564-15850644 37 7.88e-06 TGTTTGCTGC CGCCCCCT AGTGGGCAAC chr1:150505176-150505256 35 7.88e-06 tcgtggagct cgccccct aacggtgaag chr11:19925201-19925281 54 1.78e-05 AAGTCACTGC TGCCCCCT ACTGCCCAAG chr6:80578017-80578097 11 1.78e-05 GGAGAAATTG TGCCCCCT GCTGATTTAA chr4:48946836-48946916 26 1.78e-05 gcctctctag tgccccct attggcagga chr3:18430752-18430832 46 1.78e-05 ATGAGGGGAG TGCCCCCT GGTGGAAATG chr11:17526251-17526331 49 1.78e-05 AGGTCTTGGC TGCCCCCT GGTGCCAGGC chr10:123494201-12349428 27 1.78e-05 CGGCTTCTTC TGCCCCCT GGTGGCTTTT chr18:3995659-3995739 26 1.78e-05 CTAACCACAC TGCCCCCT AGTGTTCTCT chr2:10188963-10189043 35 1.78e-05 TGACTTACAG TGCCCCCT TCTGTTCACA chr19:18383350-18383430 39 2.77e-05 gcctcaccag cgccctct attgagaaat chr6:125476074-125476154 41 2.77e-05 CTGATGCGCT CGCCCTCT AGGGGCAGAA chr11:124633208-12463328 13 2.77e-05 GGCACCTCTG CGCCCTCT GGCGGCCGCC chr12:122120109-12212018 30 2.77e-05 GCAGAATGAG CGCCCTCT AGGGGCTGTC chr4:74519495-74519575 54 2.77e-05 TGGGCTGCAG CGCCCTCT AGTGACGTAA chr2:43804586-43804666 30 3.72e-05 CACAACACAT CGCCACCT GCAGGTGGAT chr2:27526438-27526518 47 3.72e-05 CAGTAAATTG CGCCACCT GGCTTTCAAc chr20:51812917-51812997 38 3.72e-05 AATTAGAATA CGCCACCT AGTGAAGTTC chr20:56169493-56169573 37 3.72e-05 AGATCAAGGG CGCCACCT GGTGGCTAGA chr19:47343905-47343985 29 3.72e-05 GTGCCTGTGT CGCCACCT GCTGACAGCT chr19:34827880-34827960 29 4.96e-05 CTTGTAGAGG TGCCCTCT GCTGGGTGCT chr19:40257482-40257562 39 4.96e-05 CCCAGGATGC TGCCCTCT AGCGGTGGGA chr2:231025021-231025101 38 4.96e-05 GGGCCCACAG TGCCCTCT GGTGGTTGAA chr14:91639625-91639705 44 4.96e-05 TGGCTTCTGC TGCCCTCT GGTGGTCACG chr10:85786673-85786753 64 4.96e-05 agccctctca tgccctct attggcaga chr3:27722824-27722904 35 4.96e-05 CAGATCTGCC TGCCCTCT AGTGGGCAAC chr2:216134720-216134800 31 4.96e-05 GTTGTGCCAG TGCCCTCT AGCGGTCAGT chr6:31797848-31797928 50 6.16e-05 GAATCAACAC TGCCACCT TCTGTACGAG chr6:141884119-141884199 25 6.16e-05 GGAGCGCTTC TGCCACCT AGTGGAAAGA chr11:47123141-47123221 54 6.16e-05 CATTCTTTGC TGCCACCT AAAGCCATTT chr12:57670886-57670966 36 6.16e-05 GGGATGTGGC TGCCACCT ACTGGCAAAT chr12:97380872-97380952 34 6.16e-05 AATTCCCAAG TGCCACCT CCAGAGGGCA chr4:186017329-186017409 50 6.16e-05 AAGGACACTC TGCCACCT GGTGGCTTAG chr8:56941534-56941614 44 6.16e-05 CGAGGAACAG TGCCACCT AGTGTTCTGT chr4:77679608-77679688 26 7.36e-05 aaaaGGCATG CGCCATCT CCTGGTGGAA chr6:68906677-68906757 45 7.36e-05 cattcataac cgccatct actggattgt chr2:166984567-166984647 37 7.36e-05 TACATTACAT CGCCATCT AGTGGCTAAA chr8:1729545-1729625 31 8.87e-05 TGTACGGCAG TGCCATCT GGTGGCAAGT chr11:7716049-7716129 25 8.87e-05 AGGAGCACAG TGCCATCT AGTGGAAAAA chr12:15148900-15148980 40 8.87e-05 GGGCTTAGAC TGCCATCT TGTGGATATT chr11:47475911-47475991 27 8.87e-05 aagactacac tgccatct gctggtccta chr16:4598891-4598971 38 8.87e-05 CTATAACCAG TGCCATCT GCTGGCAACA chr17:20020134-20020214 38 8.87e-05 gggctgctac tgccatct agtgggtaga chr10:102000682-10200076 39 9.87e-05 TTCATTAGTG CTCCCCCT AGAGACAGGA chr19:10111050-10111130 37 9.87e-05 gcccctctgg ctccccct actgtccatg chr7:27960928-27961008 6 1.11e-04 TCCCC TTCCCCCT TCCAGCAAGT chr7:22605073-22605153 49 1.19e-04 TTTTTTTTCC CCCCCCCT CTCCTCATGG chr7:98470108-98470188 22 1.29e-04 AGACGGATGT CACCCCCT AGTGGCATCA chr11:86002966-86003046 54 1.29e-04 TGGTTATGGG CACCCCCT GCTGGAGAGT chr19:1218147-1218227 73 1.29e-04 GCTGTGCTCC CACCCCCT chr2:20293526-20293606 45 1.29e-04 CTCTCAAAGG CACCCCCT GCAGGACATC chr7:151630473-151630553 54 1.61e-04 TATTCTAGAT CTCCCTCT TGTGGACCAT chr11:112151450-11215153 6 1.61e-04 AGCAT CTCCCTCT AGTGGCCACC chr1:204256336-204256416 20 1.61e-04 TGGTGACAGT CTCCCTCT TTTTTTTTTT chr7:102702497-102702577 34 1.61e-04 AGATTAAGTA CTCCCTCT GCTGAGCAGA chr9:96923333-96923413 68 1.61e-04 caggtggagt ctccctct ctcgc chr11:14476723-14476803 27 1.61e-04 CTGCACAGAG CTCCCTCT AGTGTTGTGA chr19:51598142-51598222 30 1.61e-04 GAGGTCACAG CGACCCCT TGTGGCCAGA chr9:94489685-94489765 40 1.61e-04 AACTCTTTGT CTCCCTCT ACAGGATTTA chr6:20528715-20528795 32 2.19e-04 TATAGCACTC TGACCCCT AGTGGTTAAA chr13:96313414-96313494 24 2.19e-04 TGGCCTTCAG TGACCCCT GGTGGTTATA chr3:196172416-196172496 30 2.74e-04 atgactgtgg ccccacct agaggtgaac chr18:8696946-8697026 64 2.74e-04 AGCCCCAGAG CCCCACCT GCTTTTTTT chr12:95638333-95638413 20 2.74e-04 agtctttCCC CACCCTCT TGCCTCtttt chr17:72404554-72404634 59 3.20e-04 agccctgagt caccacct tggacaccca chr1:55750605-55750685 8 3.20e-04 GCCCTTC TCCCCTCT TTCTGCTTCT chr16:69158008-69158088 51 3.20e-04 ACAACAGCAG CACCACCT GGTGGCAAAC chr1:208412500-208412580 56 3.20e-04 CTTTCAAGAG TCCCCTCT AGTGGAGATA chrX:24072323-24072403 55 3.74e-04 GACGCTCTTA CGACACCT AGCTATATTC chr15:76214250-76214330 27 4.24e-04 atgacaacag tgcctcct tctggaatac chr2:7058918-7058998 27 4.24e-04 CATCCTGCGC TGCCTCCT GCAGGATCAA chr15:98838535-98838615 51 4.24e-04 GGTTGCAGAG TGACCTCT AGTGTTAAAA chr1:174713240-174713320 42 4.24e-04 GCTGCAATCC TGACCTCT AGTGGACATT chr11:58513178-58513258 69 4.24e-04 cagttgtgca tgcctcct ctgt chr1:226738264-226738344 63 4.65e-04 GTGAGGTAAA CGCCACCC TATGGTCTTT chr19:13305473-13305553 15 4.65e-04 TTTGGCTGTT TTCCATCT GGCCTCCAGG chr1:162006869-162006949 41 4.65e-04 GGGAGTATAG TGACACCT GGTGTCTGGT chr3:33436281-33436361 16 4.87e-04 ggccaattcc tgccctcc acttgttttt chr11:45315296-45315376 34 5.24e-04 TGGAAGATGC TGCCACCC GGAGGATGTG chr6:53516123-53516203 13 5.24e-04 GAATTCCGTC TGCCACCC AGTGGCCGCT chr20:441043-441123 25 5.54e-04 cagggcaaga tcccatct ctcaaaaaaa chr19:28957164-28957244 63 6.16e-04 GGGTGCTGTT TGACATCT GCCAACACCT -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif YGCCMYCT MEME-4 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr11:66789334-66789414 7.9e-06 32_[+4]_40 chr1:53152043-53152123 7.9e-06 37_[+4]_35 chr11:35843478-35843558 7.9e-06 29_[+4]_43 chr3:32440681-32440761 7.9e-06 33_[+4]_39 chr5:35003622-35003702 7.9e-06 24_[+4]_48 chr10:81227285-81227365 7.9e-06 50_[+4]_22 chr16:15850564-15850644 7.9e-06 36_[+4]_36 chr1:150505176-150505256 7.9e-06 34_[+4]_38 chr11:19925201-19925281 1.8e-05 53_[+4]_19 chr6:80578017-80578097 1.8e-05 10_[+4]_62 chr4:48946836-48946916 1.8e-05 25_[+4]_47 chr3:18430752-18430832 1.8e-05 45_[+4]_27 chr11:17526251-17526331 1.8e-05 48_[+4]_24 chr10:123494201-12349428 1.8e-05 26_[+4]_46 chr18:3995659-3995739 1.8e-05 25_[+4]_47 chr2:10188963-10189043 1.8e-05 34_[+4]_38 chr19:18383350-18383430 2.8e-05 38_[+4]_34 chr6:125476074-125476154 2.8e-05 40_[+4]_32 chr11:124633208-12463328 2.8e-05 12_[+4]_60 chr12:122120109-12212018 2.8e-05 29_[+4]_43 chr4:74519495-74519575 2.8e-05 53_[+4]_19 chr2:43804586-43804666 3.7e-05 29_[+4]_43 chr2:27526438-27526518 3.7e-05 46_[+4]_26 chr20:51812917-51812997 3.7e-05 37_[+4]_35 chr20:56169493-56169573 3.7e-05 36_[+4]_36 chr19:47343905-47343985 3.7e-05 28_[+4]_44 chr19:34827880-34827960 5e-05 28_[+4]_44 chr19:40257482-40257562 5e-05 38_[+4]_34 chr2:231025021-231025101 5e-05 37_[+4]_35 chr14:91639625-91639705 5e-05 43_[+4]_29 chr10:85786673-85786753 5e-05 63_[+4]_9 chr3:27722824-27722904 5e-05 34_[+4]_38 chr2:216134720-216134800 5e-05 30_[+4]_42 chr6:31797848-31797928 6.2e-05 49_[+4]_23 chr6:141884119-141884199 6.2e-05 24_[+4]_48 chr11:47123141-47123221 6.2e-05 53_[+4]_19 chr12:57670886-57670966 6.2e-05 35_[+4]_37 chr12:97380872-97380952 6.2e-05 33_[+4]_39 chr4:186017329-186017409 6.2e-05 49_[+4]_23 chr8:56941534-56941614 6.2e-05 43_[+4]_29 chr4:77679608-77679688 7.4e-05 25_[+4]_47 chr6:68906677-68906757 7.4e-05 44_[+4]_28 chr2:166984567-166984647 7.4e-05 36_[+4]_36 chr8:1729545-1729625 8.9e-05 30_[+4]_42 chr11:7716049-7716129 8.9e-05 24_[+4]_48 chr12:15148900-15148980 8.9e-05 39_[+4]_33 chr11:47475911-47475991 8.9e-05 26_[+4]_46 chr16:4598891-4598971 8.9e-05 37_[+4]_35 chr17:20020134-20020214 8.9e-05 37_[+4]_35 chr10:102000682-10200076 9.9e-05 38_[+4]_34 chr19:10111050-10111130 9.9e-05 36_[+4]_36 chr7:27960928-27961008 0.00011 5_[+4]_67 chr7:22605073-22605153 0.00012 48_[+4]_24 chr7:98470108-98470188 0.00013 21_[+4]_51 chr11:86002966-86003046 0.00013 53_[+4]_19 chr19:1218147-1218227 0.00013 72_[+4] chr2:20293526-20293606 0.00013 44_[+4]_28 chr7:151630473-151630553 0.00016 53_[+4]_19 chr11:112151450-11215153 0.00016 5_[+4]_67 chr1:204256336-204256416 0.00016 19_[+4]_53 chr7:102702497-102702577 0.00016 33_[+4]_39 chr9:96923333-96923413 0.00016 67_[+4]_5 chr11:14476723-14476803 0.00016 26_[+4]_46 chr19:51598142-51598222 0.00016 29_[+4]_43 chr9:94489685-94489765 0.00016 39_[+4]_33 chr6:20528715-20528795 0.00022 31_[+4]_41 chr13:96313414-96313494 0.00022 23_[+4]_49 chr3:196172416-196172496 0.00027 29_[+4]_43 chr18:8696946-8697026 0.00027 63_[+4]_9 chr12:95638333-95638413 0.00027 19_[+4]_53 chr17:72404554-72404634 0.00032 58_[+4]_14 chr1:55750605-55750685 0.00032 7_[+4]_65 chr16:69158008-69158088 0.00032 50_[+4]_22 chr1:208412500-208412580 0.00032 55_[+4]_17 chrX:24072323-24072403 0.00037 54_[+4]_18 chr15:76214250-76214330 0.00042 26_[+4]_46 chr2:7058918-7058998 0.00042 26_[+4]_46 chr15:98838535-98838615 0.00042 50_[+4]_22 chr1:174713240-174713320 0.00042 41_[+4]_31 chr11:58513178-58513258 0.00042 68_[+4]_4 chr1:226738264-226738344 0.00047 62_[+4]_10 chr19:13305473-13305553 0.00047 14_[+4]_58 chr1:162006869-162006949 0.00047 40_[+4]_32 chr3:33436281-33436361 0.00049 15_[+4]_57 chr11:45315296-45315376 0.00052 33_[+4]_39 chr6:53516123-53516203 0.00052 12_[+4]_60 chr20:441043-441123 0.00055 24_[+4]_48 chr19:28957164-28957244 0.00062 62_[+4]_10 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif YGCCMYCT MEME-4 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF YGCCMYCT width=8 seqs=88 chr11:66789334-66789414 ( 33) CGCCCCCT 1 chr1:53152043-53152123 ( 38) CGCCCCCT 1 chr11:35843478-35843558 ( 30) CGCCCCCT 1 chr3:32440681-32440761 ( 34) CGCCCCCT 1 chr5:35003622-35003702 ( 25) CGCCCCCT 1 chr10:81227285-81227365 ( 51) CGCCCCCT 1 chr16:15850564-15850644 ( 37) CGCCCCCT 1 chr1:150505176-150505256 ( 35) CGCCCCCT 1 chr11:19925201-19925281 ( 54) TGCCCCCT 1 chr6:80578017-80578097 ( 11) TGCCCCCT 1 chr4:48946836-48946916 ( 26) TGCCCCCT 1 chr3:18430752-18430832 ( 46) TGCCCCCT 1 chr11:17526251-17526331 ( 49) TGCCCCCT 1 chr10:123494201-12349428 ( 27) TGCCCCCT 1 chr18:3995659-3995739 ( 26) TGCCCCCT 1 chr2:10188963-10189043 ( 35) TGCCCCCT 1 chr19:18383350-18383430 ( 39) CGCCCTCT 1 chr6:125476074-125476154 ( 41) CGCCCTCT 1 chr11:124633208-12463328 ( 13) CGCCCTCT 1 chr12:122120109-12212018 ( 30) CGCCCTCT 1 chr4:74519495-74519575 ( 54) CGCCCTCT 1 chr2:43804586-43804666 ( 30) CGCCACCT 1 chr2:27526438-27526518 ( 47) CGCCACCT 1 chr20:51812917-51812997 ( 38) CGCCACCT 1 chr20:56169493-56169573 ( 37) CGCCACCT 1 chr19:47343905-47343985 ( 29) CGCCACCT 1 chr19:34827880-34827960 ( 29) TGCCCTCT 1 chr19:40257482-40257562 ( 39) TGCCCTCT 1 chr2:231025021-231025101 ( 38) TGCCCTCT 1 chr14:91639625-91639705 ( 44) TGCCCTCT 1 chr10:85786673-85786753 ( 64) TGCCCTCT 1 chr3:27722824-27722904 ( 35) TGCCCTCT 1 chr2:216134720-216134800 ( 31) TGCCCTCT 1 chr6:31797848-31797928 ( 50) TGCCACCT 1 chr6:141884119-141884199 ( 25) TGCCACCT 1 chr11:47123141-47123221 ( 54) TGCCACCT 1 chr12:57670886-57670966 ( 36) TGCCACCT 1 chr12:97380872-97380952 ( 34) TGCCACCT 1 chr4:186017329-186017409 ( 50) TGCCACCT 1 chr8:56941534-56941614 ( 44) TGCCACCT 1 chr4:77679608-77679688 ( 26) CGCCATCT 1 chr6:68906677-68906757 ( 45) CGCCATCT 1 chr2:166984567-166984647 ( 37) CGCCATCT 1 chr8:1729545-1729625 ( 31) TGCCATCT 1 chr11:7716049-7716129 ( 25) TGCCATCT 1 chr12:15148900-15148980 ( 40) TGCCATCT 1 chr11:47475911-47475991 ( 27) TGCCATCT 1 chr16:4598891-4598971 ( 38) TGCCATCT 1 chr17:20020134-20020214 ( 38) TGCCATCT 1 chr10:102000682-10200076 ( 39) CTCCCCCT 1 chr19:10111050-10111130 ( 37) CTCCCCCT 1 chr7:27960928-27961008 ( 6) TTCCCCCT 1 chr7:22605073-22605153 ( 49) CCCCCCCT 1 chr7:98470108-98470188 ( 22) CACCCCCT 1 chr11:86002966-86003046 ( 54) CACCCCCT 1 chr19:1218147-1218227 ( 73) CACCCCCT 1 chr2:20293526-20293606 ( 45) CACCCCCT 1 chr7:151630473-151630553 ( 54) CTCCCTCT 1 chr11:112151450-11215153 ( 6) CTCCCTCT 1 chr1:204256336-204256416 ( 20) CTCCCTCT 1 chr7:102702497-102702577 ( 34) CTCCCTCT 1 chr9:96923333-96923413 ( 68) CTCCCTCT 1 chr11:14476723-14476803 ( 27) CTCCCTCT 1 chr19:51598142-51598222 ( 30) CGACCCCT 1 chr9:94489685-94489765 ( 40) CTCCCTCT 1 chr6:20528715-20528795 ( 32) TGACCCCT 1 chr13:96313414-96313494 ( 24) TGACCCCT 1 chr3:196172416-196172496 ( 30) CCCCACCT 1 chr18:8696946-8697026 ( 64) CCCCACCT 1 chr12:95638333-95638413 ( 20) CACCCTCT 1 chr17:72404554-72404634 ( 59) CACCACCT 1 chr1:55750605-55750685 ( 8) TCCCCTCT 1 chr16:69158008-69158088 ( 51) CACCACCT 1 chr1:208412500-208412580 ( 56) TCCCCTCT 1 chrX:24072323-24072403 ( 55) CGACACCT 1 chr15:76214250-76214330 ( 27) TGCCTCCT 1 chr2:7058918-7058998 ( 27) TGCCTCCT 1 chr15:98838535-98838615 ( 51) TGACCTCT 1 chr1:174713240-174713320 ( 42) TGACCTCT 1 chr11:58513178-58513258 ( 69) TGCCTCCT 1 chr1:226738264-226738344 ( 63) CGCCACCC 1 chr19:13305473-13305553 ( 15) TTCCATCT 1 chr1:162006869-162006949 ( 41) TGACACCT 1 chr3:33436281-33436361 ( 16) TGCCCTCC 1 chr11:45315296-45315376 ( 34) TGCCACCC 1 chr6:53516123-53516203 ( 13) TGCCACCC 1 chr20:441043-441123 ( 25) TCCCATCT 1 chr19:28957164-28957244 ( 63) TGACATCT 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif YGCCMYCT MEME-4 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 18250 bayes= 9.56875 E= 2.3e-047 -1310 112 -1310 86 -177 -172 171 -117 -158 202 -1310 -1310 -1310 216 -1310 -1310 46 140 -1310 -304 -1310 137 -1310 58 -1310 216 -1310 -1310 -1310 -230 -1310 176 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif YGCCMYCT MEME-4 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 88 E= 2.3e-047 0.000000 0.488636 0.000000 0.511364 0.079545 0.068182 0.727273 0.125000 0.090909 0.909091 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.375000 0.590909 0.000000 0.034091 0.000000 0.579545 0.000000 0.420455 0.000000 1.000000 0.000000 0.000000 0.000000 0.045455 0.000000 0.954545 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif YGCCMYCT MEME-4 regular expression -------------------------------------------------------------------------------- [TC]GCC[CA][CT]CT -------------------------------------------------------------------------------- Time 15.53 secs. ******************************************************************************** ******************************************************************************** MOTIF GTGGCCAC MEME-5 width = 8 sites = 31 llr = 260 E-value = 7.3e+000 ******************************************************************************** -------------------------------------------------------------------------------- Motif GTGGCCAC MEME-5 Description -------------------------------------------------------------------------------- Simplified A 12::::81 pos.-specific C 2:::a9:7 probability G 7:aa:::2 matrix T 18:::12: bits 2.2 *** 2.0 *** 1.7 **** 1.5 **** Relative 1.3 ***** Entropy 1.1 ****** (12.1 bits) 0.9 ******* 0.7 ******** 0.4 ******** 0.2 ******** 0.0 -------- Multilevel GTGGCCAC consensus G sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GTGGCCAC MEME-5 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr7:35464638-35464718 70 9.40e-06 ACTGCAGCTA GTGGCCAC AGG chr11:112151450-11215153 15 9.40e-06 TCTCCCTCTA GTGGCCAC CATGGTCTAT chr19:2264530-2264610 1 9.40e-06 . gtggccac tgcactctag chr9:96923333-96923413 3 9.40e-06 TT GTGGCCAC TCCTTTTATT chr19:15202824-15202904 25 9.40e-06 AGTTAGAGAA GTGGCCAC TAGGTGGCAA chr2:30937107-30937187 64 1.87e-05 CGGCTGCACA GTGGCCAG Atttttttt chr2:99453679-99453759 48 1.87e-05 GTGCCACCAA GTGGCCAG CAAAATTTCT chr19:51598142-51598222 39 1.87e-05 GCGACCCCTT GTGGCCAG AGACGAAAAG chr16:49034591-49034671 35 2.82e-05 CTTGCCTTAC CTGGCCAC AAGGGGGCGT chr1:236509188-236509268 28 2.82e-05 GAGCCCCCAG CTGGCCAC TAGGCTACAA chr17:72404554-72404634 34 3.73e-05 gtactgctga gaggccac gtggaggagc chr5:38994552-38994632 54 3.73e-05 CTGGCCGATA GAGGCCAC TGTTCGTTCA chr19:17981240-17981320 17 3.73e-05 TAGGCCAGAG GAGGCCAC CAGGGAGCAG chr15:40971440-40971520 29 4.70e-05 gcaagcatct gtggcctc accactggga chr1:230404809-230404889 43 5.85e-05 TCCCCCTCCA ATGGCCAC ATCCTGGGAT chr2:11969506-11969586 21 5.85e-05 ACGGGCCCAA ATGGCCAC CGGGGGGCAC chr5:131515972-131516052 43 9.12e-05 TCTACTGGGT TTGGCCAC TAGGAGGACC chr20:47521689-47521769 69 9.12e-05 GTGCTCTCTG GTGGCCAA TATA chr6:11014058-11014138 21 9.12e-05 tggtcatcct ttggccac gtccctccac chr6:24389621-24389701 46 9.12e-05 GCTCCCTCCT GTGGCCAA ACTTCTTGAA chr1:46872145-46872225 9 1.00e-04 AGGCCTCT GAGGCCAG GGCGGGTTGC chr5:35003622-35003702 34 1.22e-04 GCGCCCCCTA GTGGCCTG AGAGCTGCAC chr5:158943027-158943107 16 1.22e-04 GGTGTCGCTG GTGGCTAC TGACCCATCT chr7:90718827-90718907 27 1.22e-04 GTATATCCAT GTGGCCTG TAGAGGGCAG chr17:73168043-73168123 40 1.22e-04 GCTCCTCCTT GTGGCTAC ATACCATAAT chr5:55232101-55232181 14 1.39e-04 TGGGCACAGA CAGGCCAC AAGATGGCGC chr6:53516123-53516203 22 1.39e-04 CTGCCACCCA GTGGCCGC TGAAATAAAT chr6:7144005-7144085 18 1.48e-04 TTAGATACAA CTGGCCTC TGCAGCCCAC chr14:103057051-10305713 51 1.48e-04 GTAGCCCAGC CTGGCCTC AGCCTTGGGG chr13:33243348-33243428 32 1.60e-04 GCTCCTCCTG GTGGCCAT TTATTTAAAC chr4:77679608-77679688 70 1.81e-04 TGGGCATGAG ATGGCCAG TAG -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GTGGCCAC MEME-5 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr7:35464638-35464718 9.4e-06 69_[+5]_3 chr11:112151450-11215153 9.4e-06 14_[+5]_58 chr19:2264530-2264610 9.4e-06 [+5]_72 chr9:96923333-96923413 9.4e-06 2_[+5]_70 chr19:15202824-15202904 9.4e-06 24_[+5]_48 chr2:30937107-30937187 1.9e-05 63_[+5]_9 chr2:99453679-99453759 1.9e-05 47_[+5]_25 chr19:51598142-51598222 1.9e-05 38_[+5]_34 chr16:49034591-49034671 2.8e-05 34_[+5]_38 chr1:236509188-236509268 2.8e-05 27_[+5]_45 chr17:72404554-72404634 3.7e-05 33_[+5]_39 chr5:38994552-38994632 3.7e-05 53_[+5]_19 chr19:17981240-17981320 3.7e-05 16_[+5]_56 chr15:40971440-40971520 4.7e-05 28_[+5]_44 chr1:230404809-230404889 5.9e-05 42_[+5]_30 chr2:11969506-11969586 5.9e-05 20_[+5]_52 chr5:131515972-131516052 9.1e-05 42_[+5]_30 chr20:47521689-47521769 9.1e-05 68_[+5]_4 chr6:11014058-11014138 9.1e-05 20_[+5]_52 chr6:24389621-24389701 9.1e-05 45_[+5]_27 chr1:46872145-46872225 0.0001 8_[+5]_64 chr5:35003622-35003702 0.00012 33_[+5]_39 chr5:158943027-158943107 0.00012 15_[+5]_57 chr7:90718827-90718907 0.00012 26_[+5]_46 chr17:73168043-73168123 0.00012 39_[+5]_33 chr5:55232101-55232181 0.00014 13_[+5]_59 chr6:53516123-53516203 0.00014 21_[+5]_51 chr6:7144005-7144085 0.00015 17_[+5]_55 chr14:103057051-10305713 0.00015 50_[+5]_22 chr13:33243348-33243428 0.00016 31_[+5]_41 chr4:77679608-77679688 0.00018 69_[+5]_3 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GTGGCCAC MEME-5 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF GTGGCCAC width=8 seqs=31 chr7:35464638-35464718 ( 70) GTGGCCAC 1 chr11:112151450-11215153 ( 15) GTGGCCAC 1 chr19:2264530-2264610 ( 1) GTGGCCAC 1 chr9:96923333-96923413 ( 3) GTGGCCAC 1 chr19:15202824-15202904 ( 25) GTGGCCAC 1 chr2:30937107-30937187 ( 64) GTGGCCAG 1 chr2:99453679-99453759 ( 48) GTGGCCAG 1 chr19:51598142-51598222 ( 39) GTGGCCAG 1 chr16:49034591-49034671 ( 35) CTGGCCAC 1 chr1:236509188-236509268 ( 28) CTGGCCAC 1 chr17:72404554-72404634 ( 34) GAGGCCAC 1 chr5:38994552-38994632 ( 54) GAGGCCAC 1 chr19:17981240-17981320 ( 17) GAGGCCAC 1 chr15:40971440-40971520 ( 29) GTGGCCTC 1 chr1:230404809-230404889 ( 43) ATGGCCAC 1 chr2:11969506-11969586 ( 21) ATGGCCAC 1 chr5:131515972-131516052 ( 43) TTGGCCAC 1 chr20:47521689-47521769 ( 69) GTGGCCAA 1 chr6:11014058-11014138 ( 21) TTGGCCAC 1 chr6:24389621-24389701 ( 46) GTGGCCAA 1 chr1:46872145-46872225 ( 9) GAGGCCAG 1 chr5:35003622-35003702 ( 34) GTGGCCTG 1 chr5:158943027-158943107 ( 16) GTGGCTAC 1 chr7:90718827-90718907 ( 27) GTGGCCTG 1 chr17:73168043-73168123 ( 40) GTGGCTAC 1 chr5:55232101-55232181 ( 14) CAGGCCAC 1 chr6:53516123-53516203 ( 22) GTGGCCGC 1 chr6:7144005-7144085 ( 18) CTGGCCTC 1 chr14:103057051-10305713 ( 51) CTGGCCTC 1 chr13:33243348-33243428 ( 32) GTGGCCAT 1 chr4:77679608-77679688 ( 70) ATGGCCAG 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GTGGCCAC MEME-5 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 18250 bayes= 9.16214 E= 7.3e+000 -149 -47 161 -212 -76 -1160 -1160 158 -1160 -1160 217 -1160 -1160 -1160 217 -1160 -1160 216 -1160 -1160 -1160 206 -1160 -212 157 -1160 -278 -80 -208 160 2 -312 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GTGGCCAC MEME-5 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 31 E= 7.3e+000 0.096774 0.161290 0.677419 0.064516 0.161290 0.000000 0.000000 0.838710 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.935484 0.000000 0.064516 0.806452 0.000000 0.032258 0.161290 0.064516 0.677419 0.225806 0.032258 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GTGGCCAC MEME-5 regular expression -------------------------------------------------------------------------------- GTGGCCA[CG] -------------------------------------------------------------------------------- Time 18.75 secs. ******************************************************************************** ******************************************************************************** SUMMARY OF MOTIFS ******************************************************************************** -------------------------------------------------------------------------------- Combined block diagrams: non-overlapping sites with p-value < 0.0001 -------------------------------------------------------------------------------- SEQUENCE NAME COMBINED P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr2:86595592-86595672 3.00e-02 29_[+1(3.00e-05)]_[+1(3.00e-05)]_\ [+1(3.00e-05)]_27 chrX:130880569-130880649 7.45e-03 80 chr6:16317065-16317145 3.16e-03 5_[+3(2.52e-05)]_18_[+2(3.89e-05)]_\ [+2(3.89e-05)]_[+2(3.89e-05)]_25 chr19:17981240-17981320 5.30e-04 16_[+5(3.73e-05)]_40_[+2(3.89e-05)]_\ [+2(3.89e-05)] chr2:11969506-11969586 1.20e-04 20_[+5(5.85e-05)]_40_[+1(3.00e-05)]_\ 4 chr10:7914109-7914189 2.75e-03 28_[+3(4.53e-05)]_31_[+2(3.89e-05)]_\ 5 chr9:114360206-114360286 2.88e-03 68_[+2(3.89e-05)]_4 chr6:43037852-43037932 8.09e-04 2_[+1(3.00e-05)]_28_[+3(1.62e-05)]_\ 34 chr2:166984567-166984647 7.92e-04 [+1(3.00e-05)]_28_[+4(7.36e-05)]_36 chr4:74519495-74519575 5.74e-03 53_[+4(2.77e-05)]_11_[+2(6.99e-05)] chr6:87776301-87776381 3.21e-03 [+2(3.89e-05)]_72 chr2:4007049-4007129 2.47e-02 66_[+2(3.89e-05)]_6 chr9:94489685-94489765 7.72e-05 [+2(3.89e-05)]_60_[+3(2.52e-05)]_4 chr8:56941534-56941614 1.28e-01 43_[+4(6.16e-05)]_29 chr14:52487712-52487792 5.94e-02 28_[+1(5.44e-05)]_44 chr11:31418962-31419042 7.14e-03 22_[+3(6.80e-05)]_32_[+2(3.89e-05)]_\ [+2(3.89e-05)]_2 chr11:65130120-65130200 5.69e-02 24_[+2(3.89e-05)]_[+2(3.89e-05)]_\ [+2(3.89e-05)]_32 chr4:186017329-186017409 1.20e-03 [+1(3.00e-05)]_[+1(3.00e-05)]_33_\ [+4(6.16e-05)]_23 chr12:113634920-11363500 1.26e-01 80 chr2:10188963-10189043 3.07e-03 34_[+4(1.78e-05)]_30_[+2(3.89e-05)] chr17:20020134-20020214 6.24e-04 [+2(3.89e-05)]_29_[+4(8.87e-05)]_35 chr4:75055127-75055207 1.44e-01 80 chr19:10369806-10369886 2.48e-02 46_[+3(5.67e-05)]_26 chr2:216134720-216134800 1.51e-04 [+1(5.44e-05)]_22_[+4(4.96e-05)]_42 chr17:71206644-71206724 7.24e-03 [+1(3.00e-05)]_72 chr14:55204235-55204315 1.02e-01 25_[+2(3.89e-05)]_[+2(3.89e-05)]_39 chr12:95638333-95638413 5.94e-03 33_[+2(3.89e-05)]_39 chr3:27722824-27722904 1.83e-04 [+1(3.00e-05)]_26_[+4(4.96e-05)]_38 chr12:93221779-93221859 5.64e-03 62_[+1(5.44e-05)]_[+1(3.00e-05)]_2 chrX:23802652-23802732 5.05e-03 33_[+2(3.89e-05)]_[+2(3.89e-05)]_31 chr19:15202824-15202904 1.28e-03 24_[+5(9.40e-06)]_1_[+3(6.80e-05)]_\ 39 chr13:20771622-20771702 6.28e-03 [+1(3.00e-05)]_27_[+3(8.18e-05)]_37 chr19:51598142-51598222 1.61e-03 38_[+5(1.87e-05)]_34 chr15:66579942-66580022 5.20e-02 [+1(3.00e-05)]_72 chr18:3995659-3995739 2.63e-03 25_[+4(1.78e-05)]_30_[+1(3.00e-05)]_\ 9 chrX:130896859-130896939 1.73e-01 80 chr1:150505176-150505256 7.92e-05 34_[+4(7.88e-06)]_38 chr16:4598891-4598971 9.54e-03 37_[+4(8.87e-05)]_35 chr3:148673416-148673496 6.23e-04 33_[+3(4.53e-05)]_29_[+2(3.89e-05)]_\ 2 chr12:122120109-12212018 9.76e-04 29_[+4(2.77e-05)]_43 chr12:116504573-11650465 6.50e-02 44_[+3(1.62e-05)]_28 chr2:99453679-99453759 1.58e-04 [+1(3.00e-05)]_39_[+5(1.87e-05)]_25 chr1:220164496-220164576 2.83e-03 80 chr6:152589524-152589604 2.07e-02 [+1(3.00e-05)]_72 chr3:186307136-186307216 1.88e-03 18_[+3(4.53e-05)]_46_[+2(3.89e-05)] chr15:44954818-44954898 5.75e-02 30_[+1(3.00e-05)]_[+1(3.00e-05)]_\ [+1(3.00e-05)]_26 chr12:108070177-10807025 3.19e-02 80 chr9:73027075-73027155 1.37e-03 27_[+1(3.00e-05)]_[+1(3.00e-05)]_\ [+1(3.00e-05)]_29 chr4:175286336-175286416 5.50e-03 59_[+2(3.89e-05)]_[+2(3.89e-05)]_5 chr12:106780141-10678022 6.41e-04 32_[+3(4.53e-05)]_25_[+2(3.89e-05)]_\ 7 chr19:38625373-38625453 2.52e-01 80 chr10:123494201-12349428 1.31e-04 [+1(3.00e-05)]_18_[+4(1.78e-05)]_46 chr7:65496005-65496085 4.35e-02 80 chr20:34026964-34027044 3.39e-01 80 chr11:58513178-58513258 3.78e-03 27_[+2(3.89e-05)]_[+2(3.89e-05)]_\ [+2(3.89e-05)]_29 chr13:33243348-33243428 1.90e-03 66_[+2(3.89e-05)]_6 chr3:157335991-157336071 8.34e-02 26_[+1(3.00e-05)]_[+1(3.00e-05)]_38 chr11:124285392-12428547 5.09e-01 80 chr4:130284005-130284085 6.78e-03 29_[+3(8.18e-05)]_35_[+2(6.99e-05)] chr11:17526251-17526331 4.49e-04 3_[+1(3.00e-05)]_37_[+4(1.78e-05)]_\ 24 chr8:72740268-72740348 1.23e-03 [+1(3.00e-05)]_44_[+3(5.67e-05)]_20 chr19:11047462-11047542 3.96e-02 36_[+3(4.53e-05)]_36 chr19:28957164-28957244 6.96e-04 [+1(3.00e-05)]_72 chr8:37248123-37248203 3.24e-03 [+1(3.00e-05)]_35_[+3(9.07e-05)]_29 chr21:28221905-28221985 3.90e-02 38_[+3(4.53e-05)]_34 chr20:30048442-30048522 2.40e-01 80 chr12:57151421-57151501 5.13e-04 [+1(5.44e-05)]_72 chr20:32400915-32400995 5.14e-03 34_[+1(3.00e-05)]_[+1(3.00e-05)]_30 chr12:49147383-49147463 5.19e-03 50_[+3(4.53e-05)]_22 chr3:127415163-127415243 3.97e-02 47_[+3(4.53e-05)]_25 chr22:19378089-19378169 6.85e-03 35_[+1(3.00e-05)]_[+1(3.00e-05)]_\ [+1(3.00e-05)]_21 chr14:37023006-37023086 4.10e-02 [+1(5.44e-05)]_72 chr1:230404809-230404889 1.40e-03 42_[+5(5.85e-05)]_22_[+2(3.89e-05)] chr11:14476723-14476803 1.47e-02 [+1(3.00e-05)]_72 chr1:51954114-51954194 7.75e-02 30_[+1(3.00e-05)]_[+1(3.00e-05)]_\ [+1(3.00e-05)]_26 chr7:28429182-28429262 3.21e-04 34_[+3(1.62e-05)]_27_[+2(3.89e-05)]_\ 3 chrX:115009451-115009531 3.03e-01 80 chr9:124049918-124049998 4.05e-02 42_[+2(3.89e-05)]_2_[+2(3.89e-05)]_\ 20 chr1:162006869-162006949 5.31e-02 80 chr7:103019905-103019985 1.64e-01 25_[+1(3.00e-05)]_[+1(5.44e-05)]_10_\ [+1(3.00e-05)]_21 chr1:27136679-27136759 5.71e-02 80 chr5:36415077-36415157 5.37e-02 40_[+1(3.00e-05)]_[+1(3.00e-05)]_24 chr20:3096332-3096412 3.44e-02 67_[+2(3.89e-05)]_5 chr6:160141800-160141880 4.55e-02 80 chr3:183613176-183613256 1.21e-04 28_[+3(4.53e-05)]_34_[+2(3.89e-05)]_\ 2 chr11:93905000-93905080 2.13e-03 40_[+3(4.53e-05)]_24_[+2(3.89e-05)] chr16:15850564-15850644 2.73e-03 36_[+4(7.88e-06)]_36 chr11:111802672-11180275 2.21e-01 80 chr1:174713240-174713320 5.15e-03 [+1(3.00e-05)]_[+1(5.44e-05)]_64 chr7:22605073-22605153 3.35e-04 32_[+2(3.89e-05)]_40 chrX:115057273-115057353 7.35e-03 80 chr15:40509552-40509632 1.65e-02 66_[+2(3.89e-05)]_6 chr8:127836792-127836872 3.20e-03 31_[+3(1.62e-05)]_41 chr14:103057051-10305713 6.07e-03 80 chr5:38994552-38994632 4.94e-02 53_[+5(3.73e-05)]_19 chr17:7816415-7816495 1.49e-02 71_[+2(3.89e-05)]_1 chr11:124633208-12463328 1.13e-02 12_[+4(2.77e-05)]_60 chr1:208412500-208412580 4.93e-03 [+1(3.00e-05)]_72 chr6:53516123-53516203 2.32e-03 80 chr10:22242680-22242760 6.05e-02 70_[+1(3.00e-05)]_2 chr10:81227285-81227365 4.13e-04 [+1(3.00e-05)]_42_[+4(7.88e-06)]_22 chr19:13305473-13305553 1.12e-03 29_[+3(4.53e-05)]_43 chr8:17924005-17924085 1.67e-01 50_[+1(3.00e-05)]_3_[+1(3.00e-05)]_\ 11 chr9:96923333-96923413 2.98e-06 2_[+5(9.40e-06)]_35_[+2(3.89e-05)]_\ 27 chr12:67749763-67749843 3.40e-03 [+2(3.89e-05)]_[+2(3.89e-05)]_26_\ [+3(4.53e-05)]_30 chr11:3887591-3887671 1.57e-02 68_[+2(3.89e-05)]_4 chr5:123006822-123006902 3.68e-02 70_[+2(3.89e-05)]_2 chr8:141737551-141737631 4.01e-02 39_[+1(3.00e-05)]_33 chr17:73168043-73168123 2.34e-03 63_[+2(3.89e-05)]_9 chr18:3594005-3594085 4.60e-02 3_[+1(3.00e-05)]_[+1(3.00e-05)]_61 chr7:90718827-90718907 1.93e-04 35_[+3(4.53e-05)]_15_[+1(3.00e-05)]_\ 14 chr6:68906677-68906757 4.38e-02 44_[+4(7.36e-05)]_28 chr10:93056408-93056488 7.52e-01 80 chr1:236509188-236509268 8.07e-04 27_[+5(2.82e-05)]_29_[+1(3.00e-05)]_\ [+1(3.00e-05)] chr2:30937107-30937187 5.81e-04 63_[+5(1.87e-05)]_1_[+2(3.89e-05)] chr19:10111050-10111130 1.05e-01 36_[+4(9.87e-05)]_36 chr4:170586712-170586792 4.67e-03 42_[+1(3.00e-05)]_30 chr15:98838535-98838615 1.05e-01 80 chr19:47343905-47343985 1.28e-03 28_[+4(3.72e-05)]_36_[+2(3.89e-05)] chr17:46429339-46429419 4.30e-02 72_[+1(5.44e-05)] chr8:96001373-96001453 2.26e-02 21_[+1(3.00e-05)]_51 chrX:134099541-134099621 4.51e-02 35_[+3(2.52e-05)]_37 chr2:20293526-20293606 7.15e-03 7_[+1(3.00e-05)]_65 chr12:107712093-10771217 5.73e-01 80 chr12:112383187-11238326 8.04e-03 53_[+2(3.89e-05)]_19 chr3:48957382-48957462 1.36e-02 25_[+2(3.89e-05)]_[+2(3.89e-05)]_39 chr7:18395916-18395996 1.70e-03 19_[+3(4.53e-05)]_21_[+3(4.53e-05)]_\ 9_[+2(3.89e-05)]_7 chr2:103270675-103270755 3.46e-01 80 chr9:130397103-130397183 1.63e-01 80 chr12:923499-923579 1.20e-01 80 chr10:85786673-85786753 4.13e-03 24_[+2(3.89e-05)]_[+2(3.89e-05)]_23_\ [+4(4.96e-05)]_9 chr6:7144005-7144085 5.49e-03 66_[+2(6.99e-05)]_6 chr20:33684165-33684245 9.69e-04 [+1(3.00e-05)]_20_[+3(1.62e-05)]_44 chr17:46231183-46231263 2.16e-02 80 chr4:77679608-77679688 8.60e-05 2_[+1(3.00e-05)]_[+1(3.00e-05)]_7_\ [+4(7.36e-05)]_47 chr16:85133152-85133232 3.39e-01 80 chr19:1218147-1218227 3.04e-05 [+1(3.00e-05)]_47_[+3(1.62e-05)]_17 chr18:19770943-19771023 1.12e-01 28_[+2(3.89e-05)]_44 chr3:169907039-169907119 1.55e-01 80 chr1:174063094-174063174 1.74e-01 80 chr15:68006777-68006857 1.05e-03 [+1(3.00e-05)]_[+1(3.00e-05)]_64 chr15:59983567-59983647 1.14e-01 80 chr20:56169493-56169573 1.29e-05 5_[+2(3.89e-05)]_23_[+4(3.72e-05)]_\ 36 chr12:111712761-11171284 8.66e-03 15_[+1(3.00e-05)]_57 chr20:51812917-51812997 3.91e-04 [+1(3.00e-05)]_29_[+4(3.72e-05)]_35 chr2:113896131-113896211 6.31e-02 69_[+2(3.89e-05)]_3 chr17:5100402-5100482 3.85e-02 39_[+3(6.80e-05)]_33 chr11:47475911-47475991 1.75e-01 26_[+4(8.87e-05)]_46 chr16:69158008-69158088 5.96e-04 5_[+1(3.00e-05)]_67 chr5:158943027-158943107 5.24e-02 80 chr1:55750605-55750685 1.76e-02 80 chr12:97380872-97380952 2.24e-05 33_[+4(6.16e-05)]_2_[+3(4.53e-05)]_\ 10_[+1(3.00e-05)]_11 chr3:18430752-18430832 8.63e-04 1_[+2(3.89e-05)]_[+2(3.89e-05)]_28_\ [+4(1.78e-05)]_27 chr12:57670886-57670966 9.43e-04 [+1(3.00e-05)]_27_[+4(6.16e-05)]_37 chr17:58220415-58220495 3.98e-03 2_[+3(1.62e-05)]_70 chr8:76314414-76314494 1.37e-03 19_[+3(8.18e-05)]_39_[+2(3.89e-05)]_\ 6 chr18:8696946-8697026 3.43e-02 72_[+2(6.99e-05)] chr5:35003622-35003702 6.69e-05 24_[+4(7.88e-06)]_29_[+2(3.89e-05)]_\ 11 chr10:102000682-10200076 1.95e-01 38_[+4(9.87e-05)]_34 chr9:75815771-75815851 5.74e-03 72_[+2(3.89e-05)] chr7:102702497-102702577 9.59e-02 80 chr12:65176134-65176214 8.11e-02 36_[+2(3.89e-05)]_36 chr8:25027825-25027905 1.53e-01 38_[+3(6.80e-05)]_34 chr7:105405723-105405803 3.09e-03 6_[+3(4.53e-05)]_24_[+1(3.00e-05)]_\ 34 chr8:17434510-17434590 3.96e-02 47_[+3(2.52e-05)]_25 chr11:86002966-86003046 4.20e-04 7_[+1(3.00e-05)]_65 chr4:48946836-48946916 8.65e-03 25_[+4(1.78e-05)]_47 chr7:140711984-140712064 3.78e-02 [+1(3.00e-05)]_72 chr17:4314623-4314703 1.37e-01 23_[+2(3.89e-05)]_[+2(3.89e-05)]_41 chr11:47123141-47123221 1.34e-03 11_[+1(3.00e-05)]_34_[+4(6.16e-05)]_\ 19 chrX:115015060-115015140 4.89e-02 80 chr6:24389621-24389701 1.05e-02 45_[+5(9.12e-05)]_27 chr7:66949371-66949451 7.20e-03 70_[+2(3.89e-05)]_2 chr7:27960928-27961008 6.55e-03 26_[+2(3.89e-05)]_46 chr12:15148900-15148980 6.46e-02 39_[+4(8.87e-05)]_33 chr14:91639625-91639705 2.53e-02 43_[+4(4.96e-05)]_29 chr1:204256336-204256416 4.28e-03 26_[+2(3.89e-05)]_46 chr6:125476074-125476154 1.10e-03 9_[+1(3.00e-05)]_23_[+4(2.77e-05)]_\ 32 chr4:79593094-79593174 1.68e-02 23_[+2(3.89e-05)]_49 chr3:32440681-32440761 2.75e-03 33_[+4(7.88e-06)]_39 chr19:2264530-2264610 3.35e-04 [+5(9.40e-06)]_25_[+1(3.00e-05)]_\ [+1(3.00e-05)]_31 chr2:231025021-231025101 2.49e-03 37_[+4(4.96e-05)]_23_[+2(3.89e-05)]_\ 4 chr13:96313414-96313494 1.94e-03 68_[+2(3.89e-05)]_4 chr7:98470108-98470188 2.49e-02 80 chr6:11014058-11014138 1.67e-03 20_[+5(9.12e-05)]_15_[+1(3.00e-05)]_\ [+1(3.00e-05)]_21 chr6:141884119-141884199 4.97e-03 24_[+4(6.16e-05)]_38_[+2(3.89e-05)]_\ 2 chrX:24072323-24072403 1.82e-02 1_[+1(3.00e-05)]_71 chr15:40971440-40971520 1.02e-02 [+3(6.80e-05)]_20_[+5(4.70e-05)]_44 chr19:40257482-40257562 7.71e-04 38_[+4(4.96e-05)]_34 chr14:35908145-35908225 4.55e-02 72_[+2(6.99e-05)] chr16:49034591-49034671 7.17e-07 34_[+5(2.82e-05)]_1_[+3(7.29e-06)]_\ 12_[+2(3.89e-05)]_[+2(3.89e-05)]_1 chr1:214801651-214801731 6.74e-03 30_[+3(1.62e-05)]_42 chr11:7716049-7716129 8.49e-04 [+2(3.89e-05)]_16_[+4(8.87e-05)]_48 chr2:220460074-220460154 2.53e-03 [+1(3.00e-05)]_72 chr1:20760722-20760802 2.11e-01 80 chr19:18383350-18383430 5.94e-03 38_[+4(2.77e-05)]_26_[+2(6.99e-05)] chr2:27526438-27526518 2.23e-02 46_[+4(3.72e-05)]_26 chr10:15135012-15135092 2.68e-02 23_[+2(3.89e-05)]_[+2(3.89e-05)]_41 chr7:6036990-6037070 8.88e-04 28_[+3(2.52e-05)]_31_[+1(3.00e-05)]_\ 5 chr2:44463559-44463639 7.20e-02 [+1(5.44e-05)]_72 chrX:130947315-130947395 4.45e-03 80 chr12:54585435-54585515 1.20e-01 26_[+2(3.89e-05)]_[+2(3.89e-05)]_38 chr1:203651025-203651105 3.36e-02 38_[+1(3.00e-05)]_34 chr2:43804586-43804666 7.43e-04 29_[+4(3.72e-05)]_25_[+2(3.89e-05)]_\ 10 chr11:35843478-35843558 1.39e-04 [+1(3.00e-05)]_21_[+4(7.88e-06)]_43 chr1:20539473-20539553 3.25e-05 [+1(3.00e-05)]_33_[+3(5.67e-05)]_31 chr20:57468088-57468168 6.87e-03 33_[+2(3.89e-05)]_[+2(3.89e-05)]_31 chr6:80578017-80578097 4.26e-03 10_[+4(1.78e-05)]_42_[+2(3.89e-05)]_\ 12 chr11:112151450-11215153 1.87e-03 14_[+5(9.40e-06)]_58 chr1:46872145-46872225 2.99e-02 80 chr9:112666011-112666091 1.08e-01 61_[+2(3.89e-05)]_[+2(3.89e-05)]_3 chr17:63058842-63058922 2.46e-02 32_[+2(3.89e-05)]_[+2(3.89e-05)]_32 chr19:34827880-34827960 4.30e-02 28_[+4(4.96e-05)]_44 chr17:75217106-75217186 1.73e-01 80 chr5:55232101-55232181 1.85e-04 22_[+3(5.67e-05)]_38_[+2(3.89e-05)]_\ 4 chr2:7058918-7058998 1.67e-01 80 chr17:72404554-72404634 2.46e-03 33_[+5(3.73e-05)]_39 chr15:76214250-76214330 2.46e-01 80 chr1:53152043-53152123 4.33e-03 37_[+4(7.88e-06)]_35 chr11:96056640-96056720 4.33e-02 7_[+1(3.00e-05)]_65 chr1:226738264-226738344 1.20e-02 32_[+2(3.89e-05)]_40 chr20:47521689-47521769 2.79e-03 68_[+5(9.12e-05)]_4 chr11:72002001-72002081 1.10e-02 80 chr5:131515972-131516052 4.74e-03 8_[+1(3.00e-05)]_26_[+5(9.12e-05)]_\ 30 chr15:72036414-72036494 1.78e-04 34_[+3(6.80e-05)]_30_[+2(3.89e-05)] chr11:45315296-45315376 1.14e-01 80 chr11:19925201-19925281 1.50e-03 [+1(3.00e-05)]_45_[+4(1.78e-05)]_19 chr4:13658247-13658327 1.20e-03 [+2(3.89e-05)]_35_[+3(9.07e-05)]_29 chr6:20528715-20528795 1.07e-02 [+1(3.00e-05)]_72 chr8:1729545-1729625 8.89e-03 30_[+4(8.87e-05)]_42 chr7:151630473-151630553 1.30e-01 80 chr2:180990379-180990459 7.58e-04 [+2(3.89e-05)]_27_[+3(8.18e-05)]_37 chr10:75217035-75217115 2.70e-02 [+1(3.00e-05)]_72 chr10:7453003-7453083 2.78e-01 24_[+2(3.89e-05)]_[+2(3.89e-05)]_\ [+2(3.89e-05)]_32 chr8:117484096-117484176 3.88e-04 25_[+1(3.00e-05)]_47 chr7:35464638-35464718 9.09e-04 30_[+3(4.53e-05)]_31_[+5(9.40e-06)]_\ 3 chr20:441043-441123 4.12e-03 35_[+1(3.00e-05)]_[+1(3.00e-05)]_29 chr11:66789334-66789414 4.34e-04 32_[+4(7.88e-06)]_29_[+2(6.99e-05)]_\ 3 chr16:75594056-75594136 7.49e-03 28_[+1(3.00e-05)]_35_[+3(5.67e-05)]_\ 1 chr1:9352915-9352995 6.91e-01 80 chr3:8936371-8936451 1.24e-03 72_[+2(3.89e-05)] chr1:151168950-151169030 6.75e-02 2_[+3(6.80e-05)]_70 chr19:7633468-7633548 2.44e-01 80 chr3:196172416-196172496 1.52e-01 80 chr6:31797848-31797928 1.59e-02 49_[+4(6.16e-05)]_23 chrX:52004686-52004766 1.04e-03 80 chr3:33436281-33436361 4.53e-03 28_[+2(3.89e-05)]_[+2(3.89e-05)]_36 chr3:10024764-10024844 4.44e-04 43_[+3(7.29e-06)]_18_[+2(3.89e-05)]_\ 3 chr1:90007305-90007385 2.01e-01 80 chr4:2406058-2406138 9.91e-02 80 -------------------------------------------------------------------------------- ******************************************************************************** ******************************************************************************** Stopped because requested number of motifs (5) found. ******************************************************************************** CPU: c22n06.farnam.hpc.yale.internal ********************************************************************************