******************************************************************************** MEME - Motif discovery tool ******************************************************************************** MEME version 5.3.3 (Release date: Sun Feb 7 15:39:52 2021 -0800) For further information on how to interpret these results please access https://meme-suite.org/meme. To get a copy of the MEME Suite software please access https://meme-suite.org. ******************************************************************************** ******************************************************************************** REFERENCE ******************************************************************************** If you use this program in your research, please cite: Timothy L. Bailey and Charles Elkan, "Fitting a mixture model by expectation maximization to discover motifs in biopolymers", Proceedings of the Second International Conference on Intelligent Systems for Molecular Biology, pp. 28-36, AAAI Press, Menlo Park, California, 1994. ******************************************************************************** ******************************************************************************** TRAINING SET ******************************************************************************** PRIMARY SEQUENCES= ../result/final_prediction/K562/fasta/RankLinear0.6_40/ZNF263.fasta CONTROL SEQUENCES= --none-- ALPHABET= ACGT Sequence name Weight Length Sequence name Weight Length ------------- ------ ------ ------------- ------ ------ chr14:70014935-70015015 1.0000 80 chr18:48723283-48723363 1.0000 80 chr7:1115919-1115999 1.0000 80 chr1:154724933-154725013 1.0000 80 chr16:141508-141588 1.0000 80 chr22:50084278-50084358 1.0000 80 chr3:53876856-53876936 1.0000 80 chr10:63831928-63832008 1.0000 80 chrX:102884937-102885017 1.0000 80 chr16:89456413-89456493 1.0000 80 chrX:128770218-128770298 1.0000 80 chr8:21996056-21996136 1.0000 80 chr15:27334414-27334494 1.0000 80 chr9:136356247-136356327 1.0000 80 chr10:121066225-12106630 1.0000 80 chr7:139142059-139142139 1.0000 80 chr7:675825-675905 1.0000 80 chr19:52192309-52192389 1.0000 80 chr12:131574111-13157419 1.0000 80 chr19:8650907-8650987 1.0000 80 chr7:151505986-151506066 1.0000 80 chr17:75318911-75318991 1.0000 80 chr4:90758231-90758311 1.0000 80 chr7:505993-506073 1.0000 80 chr19:16178189-16178269 1.0000 80 chr21:33557677-33557757 1.0000 80 chr11:94373130-94373210 1.0000 80 chr15:77925212-77925292 1.0000 80 chr12:122241859-12224193 1.0000 80 chrX:25031317-25031397 1.0000 80 chr8:41721960-41722040 1.0000 80 chr3:195887359-195887439 1.0000 80 chr13:114451655-11445173 1.0000 80 chr8:50064146-50064226 1.0000 80 chr7:155138524-155138604 1.0000 80 chr8:53854348-53854428 1.0000 80 chr5:1472288-1472368 1.0000 80 chr1:26207156-26207236 1.0000 80 chr17:6366201-6366281 1.0000 80 chr8:33424191-33424271 1.0000 80 chr17:17472130-17472210 1.0000 80 chr7:75619587-75619667 1.0000 80 chr20:60933632-60933712 1.0000 80 chr5:944532-944612 1.0000 80 chr11:63865324-63865404 1.0000 80 chr13:32835860-32835940 1.0000 80 chr12:111866864-11186694 1.0000 80 chr1:206654732-206654812 1.0000 80 chr22:42680056-42680136 1.0000 80 chr9:140428824-140428904 1.0000 80 chr16:49384514-49384594 1.0000 80 chr7:151411457-151411537 1.0000 80 chr8:144871465-144871545 1.0000 80 chr6:32077073-32077153 1.0000 80 chr4:8272839-8272919 1.0000 80 chr8:49427646-49427726 1.0000 80 chr21:44464753-44464833 1.0000 80 chr12:114104218-11410429 1.0000 80 chr8:10512382-10512462 1.0000 80 chr22:39417740-39417820 1.0000 80 chr20:62151308-62151388 1.0000 80 chr7:4875195-4875275 1.0000 80 chr6:2782735-2782815 1.0000 80 chr17:37871769-37871849 1.0000 80 chr9:131001867-131001947 1.0000 80 chr6:136682161-136682241 1.0000 80 chr4:40859254-40859334 1.0000 80 chr16:81681343-81681423 1.0000 80 chr7:312075-312155 1.0000 80 chr15:25978514-25978594 1.0000 80 chr10:74027914-74027994 1.0000 80 chr5:6322287-6322367 1.0000 80 chr14:75895169-75895249 1.0000 80 chr9:124991301-124991381 1.0000 80 chr9:135061258-135061338 1.0000 80 chr17:45889650-45889730 1.0000 80 chr17:80825797-80825877 1.0000 80 chr12:2025704-2025784 1.0000 80 chr16:81477141-81477221 1.0000 80 chr19:3647311-3647391 1.0000 80 chr17:49017904-49017984 1.0000 80 chr1:168401317-168401397 1.0000 80 chr20:36568350-36568430 1.0000 80 chr10:134699268-13469934 1.0000 80 chr1:9896072-9896152 1.0000 80 chr17:74664245-74664325 1.0000 80 chr7:44347023-44347103 1.0000 80 chr20:43329914-43329994 1.0000 80 chr17:39796029-39796109 1.0000 80 chr5:149918857-149918937 1.0000 80 chr14:75721752-75721832 1.0000 80 chr15:89938777-89938857 1.0000 80 chr9:129466487-129466567 1.0000 80 chr20:61155212-61155292 1.0000 80 chr21:46808956-46809036 1.0000 80 chr2:661210-661290 1.0000 80 chr10:6621234-6621314 1.0000 80 chr1:54628815-54628895 1.0000 80 chr2:10916081-10916161 1.0000 80 chr3:14419942-14420022 1.0000 80 chr1:178482562-178482642 1.0000 80 chr11:114122417-11412249 1.0000 80 chr17:64370159-64370239 1.0000 80 chr6:134436304-134436384 1.0000 80 chr12:131530554-13153063 1.0000 80 chr9:137099429-137099509 1.0000 80 chr19:46916046-46916126 1.0000 80 chr7:158178539-158178619 1.0000 80 chr16:85616111-85616191 1.0000 80 chr3:193534763-193534843 1.0000 80 chr21:46315957-46316037 1.0000 80 chr17:2301186-2301266 1.0000 80 chr3:184098093-184098173 1.0000 80 chr16:1164272-1164352 1.0000 80 chr13:113344673-11334475 1.0000 80 chr20:43934077-43934157 1.0000 80 chr15:74700848-74700928 1.0000 80 chr17:38670400-38670480 1.0000 80 chr5:131760727-131760807 1.0000 80 chr5:394943-395023 1.0000 80 chr7:558719-558799 1.0000 80 chr5:54158017-54158097 1.0000 80 chr15:80886897-80886977 1.0000 80 chr12:48297907-48297987 1.0000 80 chr21:47231205-47231285 1.0000 80 chr1:3187404-3187484 1.0000 80 chr6:44244251-44244331 1.0000 80 chr12:133164489-13316456 1.0000 80 chr20:31598958-31599038 1.0000 80 chr3:197252697-197252777 1.0000 80 chr8:126011589-126011669 1.0000 80 chr1:87381311-87381391 1.0000 80 chr16:88374258-88374338 1.0000 80 chr22:36970032-36970112 1.0000 80 chr3:50163743-50163823 1.0000 80 chr9:135450506-135450586 1.0000 80 chr19:1164627-1164707 1.0000 80 chr9:140427522-140427602 1.0000 80 chr16:30671191-30671271 1.0000 80 chr12:133209260-13320934 1.0000 80 chr20:60970912-60970992 1.0000 80 chr16:1426248-1426328 1.0000 80 chr14:75746158-75746238 1.0000 80 chr2:131135176-131135256 1.0000 80 chr1:29214920-29215000 1.0000 80 chr17:47533130-47533210 1.0000 80 chr10:105455619-10545569 1.0000 80 chr17:80268245-80268325 1.0000 80 chr10:121302213-12130229 1.0000 80 chr3:39168819-39168899 1.0000 80 chr16:57703001-57703081 1.0000 80 chr17:61520542-61520622 1.0000 80 chr20:59290433-59290513 1.0000 80 chr19:39014018-39014098 1.0000 80 chr1:6320812-6320892 1.0000 80 chr19:1746407-1746487 1.0000 80 chr17:47950284-47950364 1.0000 80 chr7:5494899-5494979 1.0000 80 chr7:158897294-158897374 1.0000 80 chr5:146108-146188 1.0000 80 chr10:21805427-21805507 1.0000 80 chr17:48226634-48226714 1.0000 80 chr15:93160124-93160204 1.0000 80 chr7:157272896-157272976 1.0000 80 chr6:32981525-32981605 1.0000 80 chr6:158453164-158453244 1.0000 80 chr18:55574215-55574295 1.0000 80 chr5:5271507-5271587 1.0000 80 chr21:47363692-47363772 1.0000 80 chr8:141517487-141517567 1.0000 80 chr18:3452631-3452711 1.0000 80 chr2:224702287-224702367 1.0000 80 chr2:2635480-2635560 1.0000 80 chr12:131531207-13153128 1.0000 80 chr6:16761589-16761669 1.0000 80 chr21:46833918-46833998 1.0000 80 chr7:157232061-157232141 1.0000 80 chr1:117338218-117338298 1.0000 80 chr4:6679067-6679147 1.0000 80 chr1:212641279-212641359 1.0000 80 chr10:76823353-76823433 1.0000 80 chr11:113420641-11342072 1.0000 80 chr1:151119469-151119549 1.0000 80 chr9:80646904-80646984 1.0000 80 chr12:108991781-10899186 1.0000 80 chr4:918549-918629 1.0000 80 chr1:181318791-181318871 1.0000 80 chr5:172698465-172698545 1.0000 80 chr14:96152506-96152586 1.0000 80 chr9:136395127-136395207 1.0000 80 chr7:44289413-44289493 1.0000 80 chr7:128809043-128809123 1.0000 80 chr10:104504487-10450456 1.0000 80 chr17:75731418-75731498 1.0000 80 chr19:859729-859809 1.0000 80 chr9:73027883-73027963 1.0000 80 chr8:124286000-124286080 1.0000 80 chr22:45088162-45088242 1.0000 80 chr5:945186-945266 1.0000 80 chr8:128751121-128751201 1.0000 80 chr11:326787-326867 1.0000 80 chr6:34430394-34430474 1.0000 80 chr18:46468280-46468360 1.0000 80 chr13:114238860-11423894 1.0000 80 chr5:1473156-1473236 1.0000 80 chr22:30807877-30807957 1.0000 80 chr5:1165091-1165171 1.0000 80 chr12:33591436-33591516 1.0000 80 chr5:150027700-150027780 1.0000 80 chr7:506193-506273 1.0000 80 chr3:14481204-14481284 1.0000 80 chr14:24800630-24800710 1.0000 80 chr17:79703025-79703105 1.0000 80 chr6:169687946-169688026 1.0000 80 chr19:47124909-47124989 1.0000 80 chr20:43940310-43940390 1.0000 80 chr16:759170-759250 1.0000 80 chr6:168507116-168507196 1.0000 80 chr9:132164308-132164388 1.0000 80 chr20:60985028-60985108 1.0000 80 chr11:64616020-64616100 1.0000 80 chr3:194828446-194828526 1.0000 80 chr21:46347937-46348017 1.0000 80 chr17:29879725-29879805 1.0000 80 chr8:144302599-144302679 1.0000 80 chr18:77676168-77676248 1.0000 80 chr17:27072176-27072256 1.0000 80 chr5:139055617-139055697 1.0000 80 chr16:455949-456029 1.0000 80 chr15:41851319-41851399 1.0000 80 chr12:57568630-57568710 1.0000 80 chr4:40267374-40267454 1.0000 80 chr3:5095896-5095976 1.0000 80 chr22:19722509-19722589 1.0000 80 chr11:1947925-1948005 1.0000 80 chr19:1394450-1394530 1.0000 80 chr11:742703-742783 1.0000 80 chr7:5495102-5495182 1.0000 80 chr19:47582727-47582807 1.0000 80 chr1:1237732-1237812 1.0000 80 chr19:51315012-51315092 1.0000 80 chr1:202135188-202135268 1.0000 80 chr22:39473588-39473668 1.0000 80 chr19:3647111-3647191 1.0000 80 chr12:48133889-48133969 1.0000 80 chr22:19720242-19720322 1.0000 80 chr9:71790177-71790257 1.0000 80 chr2:10902941-10903021 1.0000 80 chr5:5308585-5308665 1.0000 80 chr7:24612946-24613026 1.0000 80 ******************************************************************************** ******************************************************************************** COMMAND LINE SUMMARY ******************************************************************************** This information can also be useful in the event you wish to report a problem with the MEME software. command: meme -oc ../result/final_prediction/K562/inference_raw/MEME/RankLinear0.6_40_ZNF263/ -dna -nmotifs 5 -w 8 -maxsize 250000 -nostatus ../result/final_prediction/K562/fasta/RankLinear0.6_40/ZNF263.fasta model: mod= zoops nmotifs= 5 evt= inf objective function: em= E-value of product of p-values starts= E-value of product of p-values strands: + width: minw= 8 maxw= 8 nsites: minsites= 2 maxsites= 250 wnsites= 0.8 theta: spmap= uni spfuzz= 0.5 em: prior= dirichlet b= 0.01 maxiter= 50 distance= 1e-05 trim: wg= 11 ws= 1 endgaps= yes data: n= 20000 N= 250 sample: seed= 0 hsfrac= 0 searchsize= 20000 norand= no csites= 1000 Letter frequencies in dataset: A 0.173 C 0.33 G 0.315 T 0.182 Background letter frequencies (from file dataset with add-one prior applied): A 0.173 C 0.33 G 0.315 T 0.182 Background model order: 0 ******************************************************************************** ******************************************************************************** MOTIF GGGAGSAS MEME-1 width = 8 sites = 144 llr = 1164 E-value = 5.4e-142 ******************************************************************************** -------------------------------------------------------------------------------- Motif GGGAGSAS MEME-1 Description -------------------------------------------------------------------------------- Simplified A 1::a::a: pos.-specific C :::::5:6 probability G 8aa:a5:4 matrix T 1::::::: bits 2.5 * 2.3 * * 2.0 * * 1.8 ** * Relative 1.5 **** * Entropy 1.3 **** * (11.7 bits) 1.0 ***** * 0.8 ***** * 0.5 ******** 0.3 ******** 0.0 -------- Multilevel GGGAGGAC consensus C G sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGGAGSAS MEME-1 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr19:51315012-51315092 56 3.06e-05 ATCTCAGGCA GGGAGGAC CATCCCAGGC chr6:168507116-168507196 17 3.06e-05 CTCTGTGGGA GGGAGGAC ACGTGAAGGA chr20:43940310-43940390 30 3.06e-05 CTGCTCTGTA GGGAGGAC CACGAGATTG chr7:128809043-128809123 37 3.06e-05 GTCGGCTGTA GGGAGGAC TCCGAGGAAG chr5:172698465-172698545 49 3.06e-05 AGCACCAGTG GGGAGGAC TAACGAAATG chr1:181318791-181318871 23 3.06e-05 ATGCTGTGTA GGGAGGAC TCAGGCCTGT chr17:47950284-47950364 73 3.06e-05 AGTGGGGGTG GGGAGGAC chr21:47231205-47231285 31 3.06e-05 gaggctcacg gggaggac tcacctcctt chr20:43934077-43934157 16 3.06e-05 TGGCTGCAGA GGGAGGAC CTGCTTCCGC chr16:85616111-85616191 6 3.06e-05 CCCCT GGGAGGAC CCTCCTTGGC chr6:134436304-134436384 66 3.06e-05 GGCTCCTCCC GGGAGGAC TCCCGAG chr20:61155212-61155292 32 3.06e-05 TGGGTGCCCA GGGAGGAC TCTGCCTTTG chr17:39796029-39796109 50 3.06e-05 gaCTGGGGGA GGGAGGAC CAGCAGAGGA chr17:80825797-80825877 20 3.06e-05 GTCCCCCAGG GGGAGGAC TCCGGGAGGT chr20:62151308-62151388 27 3.06e-05 GAGGAGGAGA GGGAGGAC GCCTTTCTGC chr6:32077073-32077153 72 3.06e-05 GGAGGAGAAG GGGAGGAC C chr5:1472288-1472368 49 3.06e-05 CAGGGGCGGA GGGAGGAC TCCCTGTTCA chr17:75318911-75318991 49 3.06e-05 AGGAGCCATG GGGAGGAC GCTGTGCCTG chrX:128770218-128770298 14 3.06e-05 CCGCCATAAG GGGAGGAC AGCAGTTGGG chr5:5308585-5308665 44 6.27e-05 CCAAGGAGGA GGGAGCAC CCTCCCAGGG chr1:1237732-1237812 40 6.27e-05 AGCCAGAGCC GGGAGCAC CCAGGGGCTG chr3:5095896-5095976 49 6.27e-05 TCTGGTGCCC GGGAGCAC TCTGTCTCCT chr16:455949-456029 21 6.27e-05 AAGGGGAGCA GGGAGCAC CCCGCTTCAG chr21:46347937-46348017 31 6.27e-05 TTCCCACACT GGGAGCAC AGTTCCTCCC chr11:326787-326867 53 6.27e-05 GGGGACGACA GGGAGCAC TGACTGAAGA chr9:136395127-136395207 64 6.27e-05 GATGTTGGCA GGGAGCAC TCCCAGAGG chr1:117338218-117338298 50 6.27e-05 CACTTCTCAG GGGAGCAC TCCTCAGCGG chr21:47363692-47363772 18 6.27e-05 TCTGGGTAGA GGGAGCAC TCCAGGTGGG chr6:32981525-32981605 21 6.27e-05 AGGAGGCGTA GGGAGCAC TGATAGCTGG chr7:5494899-5494979 5 6.27e-05 TATC GGGAGCAC CTGCAGGGAG chr20:59290433-59290513 37 6.27e-05 ctgggatcca gggagcac ctccctcagg chr9:140427522-140427602 37 6.27e-05 CACTCCAGAC GGGAGCAC CCCTAGACTC chr3:50163743-50163823 45 6.27e-05 GCGATGTAGG GGGAGCAC AGAGTGCGGG chr22:36970032-36970112 23 6.27e-05 gaagagtgtg gggagcac tgaagggagg chr16:88374258-88374338 18 6.27e-05 CTTAACAGCC GGGAGCAC AGAGGAGGCA chr12:133164489-13316456 30 6.27e-05 GCACCCTCCT GGGAGCAC TCTGTGAGGG chr15:80886897-80886977 53 6.27e-05 GGAGCCCCAA GGGAGCAC TCACCCTCCT chr7:558719-558799 47 6.27e-05 GGGTGGCGCG GGGAGCAC GGAGCTGGCG chr5:394943-395023 13 6.27e-05 TACCTTTGAA GGGAGCAC CGTGGGAGGG chr17:38670400-38670480 29 6.27e-05 gcagcacagt gggagcac ggagggaatc chr16:1164272-1164352 65 6.27e-05 GTCCCCGGAG GGGAGCAC TGACCTCC chr1:178482562-178482642 37 6.27e-05 GCACTGCCAA GGGAGCAC TCCCTACTCC chr9:129466487-129466567 31 6.27e-05 CAGCAGGGAA GGGAGCAC TCGGGGAGCA chr10:134699268-13469934 45 6.27e-05 AGGCGGTGGG GGGAGCAC TCACAGGCGG chr16:81477141-81477221 35 6.27e-05 GGGTCCTCTG GGGAGCAC CTTCATGCTG chr12:2025704-2025784 7 6.27e-05 CTGCTG GGGAGCAC CCCCCACCTC chr5:6322287-6322367 47 6.27e-05 GTCTCACAAT GGGAGCAC TATTTCACAG chr15:25978514-25978594 34 6.27e-05 TCCTGCCCGA GGGAGCAC TCCAGCCCCA chr7:312075-312155 34 6.27e-05 GGAGCAGGGA GGGAGCAC GGCTGAGGAT chr7:4875195-4875275 31 6.27e-05 AAAACTGTGT GGGAGCAC TGCCGCCTGT chr8:10512382-10512462 35 6.27e-05 CCGTCCTCCA GGGAGCAC AAGGGCATGG chr12:114104218-11410429 20 6.27e-05 GGAGCACTTG GGgagcac tccaggagcc chr4:8272839-8272919 66 6.27e-05 GAGCACCATG GGGAGCAC CAACTGC chr9:140428824-140428904 46 6.27e-05 CACTCCAGAT GGGAGCAC TCCCAGACTC chr11:63865324-63865404 53 6.27e-05 TGGTGCTCCT GGGAGCAC TCAGCTGCCC chr7:75619587-75619667 35 6.27e-05 CTGCTCTATG GGGAGCAC TATGCCAGGA chr17:6366201-6366281 15 6.27e-05 gagcaccatg gggagcac cCTGGAGCCC chr1:26207156-26207236 12 6.27e-05 ACAAGGTGAT GGGAGCAC GGTGCAGTAG chr7:155138524-155138604 13 6.27e-05 CCCACACAGA GGGAGCAC CCCCATAGAG chr13:114451655-11445173 39 6.27e-05 GCACAGCCAT GGGAGCAC AGCCACGGGA chr3:195887359-195887439 7 6.27e-05 GAGGCA GGGAGCAC CTCCCTAAGG chr15:77925212-77925292 34 6.27e-05 GGCGCGggga gggagcac taggagcgag chr19:16178189-16178269 7 6.27e-05 GCTGCC GGGAGCAC GGTGAGCTGG chr7:151505986-151506066 44 6.27e-05 CAGGCCTGGT GGGAGCAC GGTTCTCTCC chr7:139142059-139142139 4 6.27e-05 CCT GGGAGCAC TCAGCTGCCT chr10:121066225-12106630 59 6.27e-05 CATTCTGCTG GGGAGCAC TTCCCCTCTT chr8:21996056-21996136 43 6.27e-05 TGAGGGTGTG GGGAGCAC CAGCCAGCAG chr16:89456413-89456493 27 6.27e-05 GAGTGTGACG GGGAGCAC CGAGAGAAAG chr3:53876856-53876936 19 6.27e-05 ATGGGGTTGA GGGAGCAC CGAGGCCAGG chr22:50084278-50084358 19 6.27e-05 CGTCTAGGCC GGGAGCAC CACTCAGCCA chr16:141508-141588 22 6.27e-05 CCTCTGAGAA GGGAGCAC CAGCAGCTCC chr19:3647111-3647191 30 9.20e-05 GAGGAGGGAT GGGAGGAG GGTGCAGGCA chr8:144302599-144302679 9 9.20e-05 AGGAGCAG GGGAGGAG GCGGCTGGAG chr5:1165091-1165171 45 9.20e-05 GTGTCTCTGT GGGAGGAG GGCAGTGATG chr13:114238860-11423894 35 9.20e-05 CAGCACTGGC GGGAGGAG CGGGAGACCG chr9:80646904-80646984 33 9.20e-05 ggatgggcgc gggaggag ggagccggga chr4:6679067-6679147 2 9.20e-05 A GGGAGGAG TCCCCTCAGA chr21:46833918-46833998 67 9.20e-05 gaggaggatc gggaggag gagggg chr18:55574215-55574295 16 9.20e-05 aggaggcctg gggaggag caatctcagG chr15:93160124-93160204 36 9.20e-05 TAGCTCCTCA GGGAGGAG GGACACAGAC chr17:80268245-80268325 27 9.20e-05 AGATGAGGAG GGGAGGAG GACCTTGCGG chr17:47533130-47533210 28 9.20e-05 TCTGAGGGTG GGGAGGAG GGAGAGCTGG chr1:29214920-29215000 64 9.20e-05 CTGCATGTTG GGGAGGAG GGTGGAGAT chr14:75746158-75746238 52 9.20e-05 GGAGGGATGA GGGAGGAG GGTGCAGCGG chr1:87381311-87381391 10 9.20e-05 CGCAGAAAT GGGAGGAG ATGCTGGGAT chr1:3187404-3187484 21 9.20e-05 GAGGACAGTG GGGAGGAG GACAGTCCAG chr17:64370159-64370239 39 9.20e-05 GGATGAGCCA GGGAGGAG TCCGCAAGGG chr2:10916081-10916161 12 9.20e-05 GACTCCCATG GGGAGGAG CGCCGTGGCC chr14:75721752-75721832 7 9.20e-05 GCATTG GGGAGGAG GGAGAAGAGG chr7:44347023-44347103 5 9.20e-05 cagg gggaggag gGTGTGAGCA chr20:36568350-36568430 9 9.20e-05 GGGTGACA GGGAGGAG GGAGCTGGCT chr1:168401317-168401397 11 9.20e-05 ttcaggcaca gggaggag cctgtacaca chr19:3647311-3647391 2 9.20e-05 t gggaggag ggTGCAGGCG chr9:135061258-135061338 5 9.20e-05 gagt gggaggag gaggaggagg chr16:81681343-81681423 39 9.20e-05 TTGTCACCTA GGGAGGAG GGACAGGGCC chr17:37871769-37871849 63 9.20e-05 AGGAGTCCCA GGGAGGAG TCCCTGTGGG chr6:2782735-2782815 47 9.20e-05 GTGCTCCTCT GGGAGGAG TGAGACTCAC chr8:49427646-49427726 19 9.20e-05 GAGGGTTTTG GGGAGGAG CGCCATGCAG chr22:42680056-42680136 63 9.20e-05 AGGAGCAGCG GGGAGGAG GGATGGATGG chr1:206654732-206654812 67 9.20e-05 TGGAGGAGCA GGGAGGAG GAAGAG chr19:52192309-52192389 11 9.20e-05 gggaaagccg gggaggag cgagactggc chr9:136356247-136356327 10 9.20e-05 gaggaggag gggaggag gaactggagg chr15:27334414-27334494 37 9.20e-05 GCAGGCAACT GGGAGGAG CGAGGTGGAC chr7:1115919-1115999 24 9.20e-05 AGGCAGGCCA GGGAGGAG CACCGCCAAG chr1:54628815-54628895 27 1.23e-04 TTCCGGTCAG GGGAGCAG TGCTCCCTCA chr3:14481204-14481284 12 1.39e-04 ACGCCTGTGG AGGAGGAC TCGCTCCTGA chr16:30671191-30671271 49 1.39e-04 gaagaggagg aggaggaC TTGATCGATG chr13:32835860-32835940 50 1.39e-04 TCATCCGAGG AGGAGGAC CTCACAGCCA chr19:47124909-47124989 44 1.57e-04 GAGGGCGTCA AGGAGCAC CCAGGAGTCC chr10:104504487-10450456 13 1.57e-04 CCTCAGGAGG AGGAGCAC ACTTGAGCTG chr7:157232061-157232141 26 1.57e-04 catcacATCC AGGAGCAC CTCCTTCACC chr17:75731418-75731498 71 1.73e-04 CGTAGGTAGA AGGAGGAG TC chr10:121302213-12130229 29 1.73e-04 ggcgaggagg aggaggag gagggcaagg chr19:1164627-1164707 27 1.73e-04 gaacaggagg aggaggag gaggaacagg chr12:48297907-48297987 4 1.73e-04 aga aggaggag gaACTGTGAG chr11:114122417-11412249 59 1.73e-04 gaggaggagg aggaggag cagaaggagg chr12:111866864-11186694 2 1.73e-04 g aggaggag gGACGGCAGG chr12:122241859-12224193 17 1.73e-04 gaggaggaag aggaggag gGTGAGCGCT chrX:102884937-102885017 41 1.73e-04 CAGTCCTCGG AGGAGGAG TTCTTTCCTG chr12:57568630-57568710 25 2.08e-04 CTTGGGGATG AGGAGCAG AGCAGCCTTA chr20:60985028-60985108 15 2.08e-04 TCCTCCCCCG AGGAGCAG ACAGCCTTGA chr1:154724933-154725013 21 2.08e-04 GTGCTCCAGG TGGAGGAC TCTGCGGGCA chr12:48133889-48133969 23 2.26e-04 CCGGGCAGGG TGGAGCAC TCACCAGCAG chr12:133209260-13320934 66 2.26e-04 GGGTGCTCCC TGGAGCAC TGCGCCT chr8:53854348-53854428 47 2.26e-04 GGCTTTGTGG TGGAGCAC TCCGGCTGAG chr19:8650907-8650987 25 2.26e-04 CCCACCCCCC TGGAGCAC TCGCTCTTGA chr10:63831928-63832008 13 2.26e-04 agctcagagg tggagcac tgcagagctg chr9:73027883-73027963 14 2.43e-04 CACTCCAGGA TGGAGGAG GGAGAGCGGG chr1:9896072-9896152 31 2.43e-04 AGGGGTGGTG TGGAGGAG TCTGTGAATC chr11:113420641-11342072 16 2.95e-04 GGCCCTCTCA GGGAGGAA GGAGAAGTGA chr11:94373130-94373210 39 2.95e-04 cctgcacact gggaggaa tgcacgctgg chr7:157272896-157272976 32 3.30e-04 CATTCTGTGG GTGAGCAC TCTGGGTGAG chr19:859729-859809 16 3.64e-04 GCCGCCTGCG GTGAGGAG GCCTGGGCCT chr19:1746407-1746487 48 3.97e-04 cctccccagt gggagaag ctgaggccca chr21:33557677-33557757 71 4.30e-04 tgctcccatg gggaggtc tg chr16:57703001-57703081 36 5.32e-04 CTCGGACAGA GGGAGGTG CTCCCCCGTT chr3:14419942-14420022 10 5.32e-04 ACAAAGGCA GGGAGGTG TAAGCCTGAG chr8:144871465-144871545 52 5.32e-04 gagccaggag gggaggTG TCCTCAGGCC chr7:158178539-158178619 10 6.46e-04 TTTCCCTCC ATGAGCAG ATGTGCCCCT chr22:30807877-30807957 72 6.67e-04 gtctgccaga tggagcaa g chr17:17472130-17472210 48 6.76e-04 ccCAGGAGCC AGGAGAAG CACACCTCAC chr1:212641279-212641359 10 7.64e-04 AGGAAGCAT TTGAGGAG TGCTCCCCAT chr9:135450506-135450586 57 7.64e-04 AGCCCAGGCC GGAAGCAG TGCTCACTGG chrX:25031317-25031397 13 7.75e-04 CCGGGGCTCC TTGAGCAG CGCGCGGGCG -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGGAGSAS MEME-1 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr19:51315012-51315092 3.1e-05 55_[+1]_17 chr6:168507116-168507196 3.1e-05 16_[+1]_56 chr20:43940310-43940390 3.1e-05 29_[+1]_43 chr7:128809043-128809123 3.1e-05 36_[+1]_36 chr5:172698465-172698545 3.1e-05 48_[+1]_24 chr1:181318791-181318871 3.1e-05 22_[+1]_50 chr17:47950284-47950364 3.1e-05 72_[+1] chr21:47231205-47231285 3.1e-05 30_[+1]_42 chr20:43934077-43934157 3.1e-05 15_[+1]_57 chr16:85616111-85616191 3.1e-05 5_[+1]_67 chr6:134436304-134436384 3.1e-05 65_[+1]_7 chr20:61155212-61155292 3.1e-05 31_[+1]_41 chr17:39796029-39796109 3.1e-05 49_[+1]_23 chr17:80825797-80825877 3.1e-05 19_[+1]_53 chr20:62151308-62151388 3.1e-05 26_[+1]_46 chr6:32077073-32077153 3.1e-05 71_[+1]_1 chr5:1472288-1472368 3.1e-05 48_[+1]_24 chr17:75318911-75318991 3.1e-05 48_[+1]_24 chrX:128770218-128770298 3.1e-05 13_[+1]_59 chr5:5308585-5308665 6.3e-05 43_[+1]_29 chr1:1237732-1237812 6.3e-05 39_[+1]_33 chr3:5095896-5095976 6.3e-05 48_[+1]_24 chr16:455949-456029 6.3e-05 20_[+1]_52 chr21:46347937-46348017 6.3e-05 30_[+1]_42 chr11:326787-326867 6.3e-05 52_[+1]_20 chr9:136395127-136395207 6.3e-05 63_[+1]_9 chr1:117338218-117338298 6.3e-05 49_[+1]_23 chr21:47363692-47363772 6.3e-05 17_[+1]_55 chr6:32981525-32981605 6.3e-05 20_[+1]_52 chr7:5494899-5494979 6.3e-05 4_[+1]_68 chr20:59290433-59290513 6.3e-05 36_[+1]_36 chr9:140427522-140427602 6.3e-05 36_[+1]_36 chr3:50163743-50163823 6.3e-05 44_[+1]_28 chr22:36970032-36970112 6.3e-05 22_[+1]_50 chr16:88374258-88374338 6.3e-05 17_[+1]_55 chr12:133164489-13316456 6.3e-05 29_[+1]_43 chr15:80886897-80886977 6.3e-05 52_[+1]_20 chr7:558719-558799 6.3e-05 46_[+1]_26 chr5:394943-395023 6.3e-05 12_[+1]_60 chr17:38670400-38670480 6.3e-05 28_[+1]_44 chr16:1164272-1164352 6.3e-05 64_[+1]_8 chr1:178482562-178482642 6.3e-05 36_[+1]_36 chr9:129466487-129466567 6.3e-05 30_[+1]_42 chr10:134699268-13469934 6.3e-05 44_[+1]_28 chr16:81477141-81477221 6.3e-05 34_[+1]_38 chr12:2025704-2025784 6.3e-05 6_[+1]_66 chr5:6322287-6322367 6.3e-05 46_[+1]_26 chr15:25978514-25978594 6.3e-05 33_[+1]_39 chr7:312075-312155 6.3e-05 33_[+1]_39 chr7:4875195-4875275 6.3e-05 30_[+1]_42 chr8:10512382-10512462 6.3e-05 34_[+1]_38 chr12:114104218-11410429 6.3e-05 19_[+1]_53 chr4:8272839-8272919 6.3e-05 65_[+1]_7 chr9:140428824-140428904 6.3e-05 45_[+1]_27 chr11:63865324-63865404 6.3e-05 52_[+1]_20 chr7:75619587-75619667 6.3e-05 34_[+1]_38 chr17:6366201-6366281 6.3e-05 14_[+1]_58 chr1:26207156-26207236 6.3e-05 11_[+1]_61 chr7:155138524-155138604 6.3e-05 12_[+1]_60 chr13:114451655-11445173 6.3e-05 38_[+1]_34 chr3:195887359-195887439 6.3e-05 6_[+1]_66 chr15:77925212-77925292 6.3e-05 33_[+1]_39 chr19:16178189-16178269 6.3e-05 6_[+1]_66 chr7:151505986-151506066 6.3e-05 43_[+1]_29 chr7:139142059-139142139 6.3e-05 3_[+1]_69 chr10:121066225-12106630 6.3e-05 58_[+1]_14 chr8:21996056-21996136 6.3e-05 42_[+1]_30 chr16:89456413-89456493 6.3e-05 26_[+1]_46 chr3:53876856-53876936 6.3e-05 18_[+1]_54 chr22:50084278-50084358 6.3e-05 18_[+1]_54 chr16:141508-141588 6.3e-05 21_[+1]_51 chr19:3647111-3647191 9.2e-05 29_[+1]_43 chr8:144302599-144302679 9.2e-05 8_[+1]_64 chr5:1165091-1165171 9.2e-05 44_[+1]_28 chr13:114238860-11423894 9.2e-05 34_[+1]_38 chr9:80646904-80646984 9.2e-05 32_[+1]_40 chr4:6679067-6679147 9.2e-05 1_[+1]_71 chr21:46833918-46833998 9.2e-05 66_[+1]_6 chr18:55574215-55574295 9.2e-05 15_[+1]_57 chr15:93160124-93160204 9.2e-05 35_[+1]_37 chr17:80268245-80268325 9.2e-05 26_[+1]_46 chr17:47533130-47533210 9.2e-05 27_[+1]_45 chr1:29214920-29215000 9.2e-05 63_[+1]_9 chr14:75746158-75746238 9.2e-05 51_[+1]_21 chr1:87381311-87381391 9.2e-05 9_[+1]_63 chr1:3187404-3187484 9.2e-05 20_[+1]_52 chr17:64370159-64370239 9.2e-05 38_[+1]_34 chr2:10916081-10916161 9.2e-05 11_[+1]_61 chr14:75721752-75721832 9.2e-05 6_[+1]_66 chr7:44347023-44347103 9.2e-05 4_[+1]_68 chr20:36568350-36568430 9.2e-05 8_[+1]_64 chr1:168401317-168401397 9.2e-05 10_[+1]_62 chr19:3647311-3647391 9.2e-05 1_[+1]_71 chr9:135061258-135061338 9.2e-05 4_[+1]_68 chr16:81681343-81681423 9.2e-05 38_[+1]_34 chr17:37871769-37871849 9.2e-05 62_[+1]_10 chr6:2782735-2782815 9.2e-05 46_[+1]_26 chr8:49427646-49427726 9.2e-05 18_[+1]_54 chr22:42680056-42680136 9.2e-05 62_[+1]_10 chr1:206654732-206654812 9.2e-05 66_[+1]_6 chr19:52192309-52192389 9.2e-05 10_[+1]_62 chr9:136356247-136356327 9.2e-05 9_[+1]_63 chr15:27334414-27334494 9.2e-05 36_[+1]_36 chr7:1115919-1115999 9.2e-05 23_[+1]_49 chr1:54628815-54628895 0.00012 26_[+1]_46 chr3:14481204-14481284 0.00014 11_[+1]_61 chr16:30671191-30671271 0.00014 48_[+1]_24 chr13:32835860-32835940 0.00014 49_[+1]_23 chr19:47124909-47124989 0.00016 43_[+1]_29 chr10:104504487-10450456 0.00016 12_[+1]_60 chr7:157232061-157232141 0.00016 25_[+1]_47 chr17:75731418-75731498 0.00017 70_[+1]_2 chr10:121302213-12130229 0.00017 28_[+1]_44 chr19:1164627-1164707 0.00017 26_[+1]_46 chr12:48297907-48297987 0.00017 3_[+1]_69 chr11:114122417-11412249 0.00017 58_[+1]_14 chr12:111866864-11186694 0.00017 1_[+1]_71 chr12:122241859-12224193 0.00017 16_[+1]_56 chrX:102884937-102885017 0.00017 40_[+1]_32 chr12:57568630-57568710 0.00021 24_[+1]_48 chr20:60985028-60985108 0.00021 14_[+1]_58 chr1:154724933-154725013 0.00021 20_[+1]_52 chr12:48133889-48133969 0.00023 22_[+1]_50 chr12:133209260-13320934 0.00023 65_[+1]_7 chr8:53854348-53854428 0.00023 46_[+1]_26 chr19:8650907-8650987 0.00023 24_[+1]_48 chr10:63831928-63832008 0.00023 12_[+1]_60 chr9:73027883-73027963 0.00024 13_[+1]_59 chr1:9896072-9896152 0.00024 30_[+1]_42 chr11:113420641-11342072 0.00029 15_[+1]_57 chr11:94373130-94373210 0.00029 38_[+1]_34 chr7:157272896-157272976 0.00033 31_[+1]_41 chr19:859729-859809 0.00036 15_[+1]_57 chr19:1746407-1746487 0.0004 47_[+1]_25 chr21:33557677-33557757 0.00043 70_[+1]_2 chr16:57703001-57703081 0.00053 35_[+1]_37 chr3:14419942-14420022 0.00053 9_[+1]_63 chr8:144871465-144871545 0.00053 51_[+1]_21 chr7:158178539-158178619 0.00065 9_[+1]_63 chr22:30807877-30807957 0.00067 71_[+1]_1 chr17:17472130-17472210 0.00068 47_[+1]_25 chr1:212641279-212641359 0.00076 9_[+1]_63 chr9:135450506-135450586 0.00076 56_[+1]_16 chrX:25031317-25031397 0.00077 12_[+1]_60 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGGAGSAS MEME-1 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF GGGAGSAS width=8 seqs=144 chr19:51315012-51315092 ( 56) GGGAGGAC 1 chr6:168507116-168507196 ( 17) GGGAGGAC 1 chr20:43940310-43940390 ( 30) GGGAGGAC 1 chr7:128809043-128809123 ( 37) GGGAGGAC 1 chr5:172698465-172698545 ( 49) GGGAGGAC 1 chr1:181318791-181318871 ( 23) GGGAGGAC 1 chr17:47950284-47950364 ( 73) GGGAGGAC 1 chr21:47231205-47231285 ( 31) GGGAGGAC 1 chr20:43934077-43934157 ( 16) GGGAGGAC 1 chr16:85616111-85616191 ( 6) GGGAGGAC 1 chr6:134436304-134436384 ( 66) GGGAGGAC 1 chr20:61155212-61155292 ( 32) GGGAGGAC 1 chr17:39796029-39796109 ( 50) GGGAGGAC 1 chr17:80825797-80825877 ( 20) GGGAGGAC 1 chr20:62151308-62151388 ( 27) GGGAGGAC 1 chr6:32077073-32077153 ( 72) GGGAGGAC 1 chr5:1472288-1472368 ( 49) GGGAGGAC 1 chr17:75318911-75318991 ( 49) GGGAGGAC 1 chrX:128770218-128770298 ( 14) GGGAGGAC 1 chr5:5308585-5308665 ( 44) GGGAGCAC 1 chr1:1237732-1237812 ( 40) GGGAGCAC 1 chr3:5095896-5095976 ( 49) GGGAGCAC 1 chr16:455949-456029 ( 21) GGGAGCAC 1 chr21:46347937-46348017 ( 31) GGGAGCAC 1 chr11:326787-326867 ( 53) GGGAGCAC 1 chr9:136395127-136395207 ( 64) GGGAGCAC 1 chr1:117338218-117338298 ( 50) GGGAGCAC 1 chr21:47363692-47363772 ( 18) GGGAGCAC 1 chr6:32981525-32981605 ( 21) GGGAGCAC 1 chr7:5494899-5494979 ( 5) GGGAGCAC 1 chr20:59290433-59290513 ( 37) GGGAGCAC 1 chr9:140427522-140427602 ( 37) GGGAGCAC 1 chr3:50163743-50163823 ( 45) GGGAGCAC 1 chr22:36970032-36970112 ( 23) GGGAGCAC 1 chr16:88374258-88374338 ( 18) GGGAGCAC 1 chr12:133164489-13316456 ( 30) GGGAGCAC 1 chr15:80886897-80886977 ( 53) GGGAGCAC 1 chr7:558719-558799 ( 47) GGGAGCAC 1 chr5:394943-395023 ( 13) GGGAGCAC 1 chr17:38670400-38670480 ( 29) GGGAGCAC 1 chr16:1164272-1164352 ( 65) GGGAGCAC 1 chr1:178482562-178482642 ( 37) GGGAGCAC 1 chr9:129466487-129466567 ( 31) GGGAGCAC 1 chr10:134699268-13469934 ( 45) GGGAGCAC 1 chr16:81477141-81477221 ( 35) GGGAGCAC 1 chr12:2025704-2025784 ( 7) GGGAGCAC 1 chr5:6322287-6322367 ( 47) GGGAGCAC 1 chr15:25978514-25978594 ( 34) GGGAGCAC 1 chr7:312075-312155 ( 34) GGGAGCAC 1 chr7:4875195-4875275 ( 31) GGGAGCAC 1 chr8:10512382-10512462 ( 35) GGGAGCAC 1 chr12:114104218-11410429 ( 20) GGGAGCAC 1 chr4:8272839-8272919 ( 66) GGGAGCAC 1 chr9:140428824-140428904 ( 46) GGGAGCAC 1 chr11:63865324-63865404 ( 53) GGGAGCAC 1 chr7:75619587-75619667 ( 35) GGGAGCAC 1 chr17:6366201-6366281 ( 15) GGGAGCAC 1 chr1:26207156-26207236 ( 12) GGGAGCAC 1 chr7:155138524-155138604 ( 13) GGGAGCAC 1 chr13:114451655-11445173 ( 39) GGGAGCAC 1 chr3:195887359-195887439 ( 7) GGGAGCAC 1 chr15:77925212-77925292 ( 34) GGGAGCAC 1 chr19:16178189-16178269 ( 7) GGGAGCAC 1 chr7:151505986-151506066 ( 44) GGGAGCAC 1 chr7:139142059-139142139 ( 4) GGGAGCAC 1 chr10:121066225-12106630 ( 59) GGGAGCAC 1 chr8:21996056-21996136 ( 43) GGGAGCAC 1 chr16:89456413-89456493 ( 27) GGGAGCAC 1 chr3:53876856-53876936 ( 19) GGGAGCAC 1 chr22:50084278-50084358 ( 19) GGGAGCAC 1 chr16:141508-141588 ( 22) GGGAGCAC 1 chr19:3647111-3647191 ( 30) GGGAGGAG 1 chr8:144302599-144302679 ( 9) GGGAGGAG 1 chr5:1165091-1165171 ( 45) GGGAGGAG 1 chr13:114238860-11423894 ( 35) GGGAGGAG 1 chr9:80646904-80646984 ( 33) GGGAGGAG 1 chr4:6679067-6679147 ( 2) GGGAGGAG 1 chr21:46833918-46833998 ( 67) GGGAGGAG 1 chr18:55574215-55574295 ( 16) GGGAGGAG 1 chr15:93160124-93160204 ( 36) GGGAGGAG 1 chr17:80268245-80268325 ( 27) GGGAGGAG 1 chr17:47533130-47533210 ( 28) GGGAGGAG 1 chr1:29214920-29215000 ( 64) GGGAGGAG 1 chr14:75746158-75746238 ( 52) GGGAGGAG 1 chr1:87381311-87381391 ( 10) GGGAGGAG 1 chr1:3187404-3187484 ( 21) GGGAGGAG 1 chr17:64370159-64370239 ( 39) GGGAGGAG 1 chr2:10916081-10916161 ( 12) GGGAGGAG 1 chr14:75721752-75721832 ( 7) GGGAGGAG 1 chr7:44347023-44347103 ( 5) GGGAGGAG 1 chr20:36568350-36568430 ( 9) GGGAGGAG 1 chr1:168401317-168401397 ( 11) GGGAGGAG 1 chr19:3647311-3647391 ( 2) GGGAGGAG 1 chr9:135061258-135061338 ( 5) GGGAGGAG 1 chr16:81681343-81681423 ( 39) GGGAGGAG 1 chr17:37871769-37871849 ( 63) GGGAGGAG 1 chr6:2782735-2782815 ( 47) GGGAGGAG 1 chr8:49427646-49427726 ( 19) GGGAGGAG 1 chr22:42680056-42680136 ( 63) GGGAGGAG 1 chr1:206654732-206654812 ( 67) GGGAGGAG 1 chr19:52192309-52192389 ( 11) GGGAGGAG 1 chr9:136356247-136356327 ( 10) GGGAGGAG 1 chr15:27334414-27334494 ( 37) GGGAGGAG 1 chr7:1115919-1115999 ( 24) GGGAGGAG 1 chr1:54628815-54628895 ( 27) GGGAGCAG 1 chr3:14481204-14481284 ( 12) AGGAGGAC 1 chr16:30671191-30671271 ( 49) AGGAGGAC 1 chr13:32835860-32835940 ( 50) AGGAGGAC 1 chr19:47124909-47124989 ( 44) AGGAGCAC 1 chr10:104504487-10450456 ( 13) AGGAGCAC 1 chr7:157232061-157232141 ( 26) AGGAGCAC 1 chr17:75731418-75731498 ( 71) AGGAGGAG 1 chr10:121302213-12130229 ( 29) AGGAGGAG 1 chr19:1164627-1164707 ( 27) AGGAGGAG 1 chr12:48297907-48297987 ( 4) AGGAGGAG 1 chr11:114122417-11412249 ( 59) AGGAGGAG 1 chr12:111866864-11186694 ( 2) AGGAGGAG 1 chr12:122241859-12224193 ( 17) AGGAGGAG 1 chrX:102884937-102885017 ( 41) AGGAGGAG 1 chr12:57568630-57568710 ( 25) AGGAGCAG 1 chr20:60985028-60985108 ( 15) AGGAGCAG 1 chr1:154724933-154725013 ( 21) TGGAGGAC 1 chr12:48133889-48133969 ( 23) TGGAGCAC 1 chr12:133209260-13320934 ( 66) TGGAGCAC 1 chr8:53854348-53854428 ( 47) TGGAGCAC 1 chr19:8650907-8650987 ( 25) TGGAGCAC 1 chr10:63831928-63832008 ( 13) TGGAGCAC 1 chr9:73027883-73027963 ( 14) TGGAGGAG 1 chr1:9896072-9896152 ( 31) TGGAGGAG 1 chr11:113420641-11342072 ( 16) GGGAGGAA 1 chr11:94373130-94373210 ( 39) GGGAGGAA 1 chr7:157272896-157272976 ( 32) GTGAGCAC 1 chr19:859729-859809 ( 16) GTGAGGAG 1 chr19:1746407-1746487 ( 48) GGGAGAAG 1 chr21:33557677-33557757 ( 71) GGGAGGTC 1 chr16:57703001-57703081 ( 36) GGGAGGTG 1 chr3:14419942-14420022 ( 10) GGGAGGTG 1 chr8:144871465-144871545 ( 52) GGGAGGTG 1 chr7:158178539-158178619 ( 10) ATGAGCAG 1 chr22:30807877-30807957 ( 72) TGGAGCAA 1 chr17:17472130-17472210 ( 48) AGGAGAAG 1 chr1:212641279-212641359 ( 10) TTGAGGAG 1 chr9:135450506-135450586 ( 57) GGAAGCAG 1 chrX:25031317-25031397 ( 13) TTGAGCAG 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGGAGSAS MEME-1 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 18250 bayes= 7.82734 E= 5.4e-142 -47 -1381 134 -126 -1381 -1381 162 -239 -463 -1381 166 -1381 253 -1381 -1381 -1381 -1381 -1381 167 -1381 -364 52 71 -1381 249 -1381 -1381 -271 -305 84 31 -1381 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGGAGSAS MEME-1 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 144 E= 5.4e-142 0.125000 0.000000 0.798611 0.076389 0.000000 0.000000 0.965278 0.034722 0.006944 0.000000 0.993056 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.013889 0.472222 0.513889 0.000000 0.972222 0.000000 0.000000 0.027778 0.020833 0.590278 0.388889 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGGAGSAS MEME-1 regular expression -------------------------------------------------------------------------------- GGGAG[GC]A[CG] -------------------------------------------------------------------------------- Time 4.91 secs. ******************************************************************************** ******************************************************************************** MOTIF GTSCTCCC MEME-2 width = 8 sites = 141 llr = 1103 E-value = 4.2e-120 ******************************************************************************** -------------------------------------------------------------------------------- Motif GTSCTCCC MEME-2 Description -------------------------------------------------------------------------------- Simplified A :::::::1 pos.-specific C 3:5a:a97 probability G 7:5::::: matrix T :a::a:12 bits 2.5 * * 2.3 * * 2.0 * * 1.8 * * Relative 1.5 * ** Entropy 1.3 * **** (11.3 bits) 1.0 * **** 0.8 ******** 0.5 ******** 0.3 ******** 0.0 -------- Multilevel GTCCTCCC consensus C G sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GTSCTCCC MEME-2 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr2:10902941-10903021 9 4.08e-05 TCTAGTCG GTCCTCCC CTGTCCTCCT chr19:47582727-47582807 51 4.08e-05 AGATCAGTGA GTCCTCCC AAGGAGCCGT chr7:5495102-5495182 57 4.08e-05 AGCCCCTCCT GTCCTCCC TGATTCCCCA chr11:1947925-1948005 53 4.08e-05 CAGAGTCTCC GTCCTCCC TTCTGTCCTC chr22:19722509-19722589 50 4.08e-05 GTCTCCTGGA GTCCTCCC AGTCTTTCCT chr17:29879725-29879805 12 4.08e-05 GTTATAAGCA GTCCTCCC TGATGGGAAG chr3:194828446-194828526 24 4.08e-05 CTGTGACCCC GTCCTCCC TGCGCTTCTG chr14:24800630-24800710 53 4.08e-05 GCTCCCCCAG GTCCTCCC GCTGCACACA chr5:1473156-1473236 37 4.08e-05 TCTGGCCAGA GTCCTCCC CCTGTCCTGA chr6:34430394-34430474 56 4.08e-05 GGAAGGCAGA GTCCTCCC TGTGCCCTCT chr8:128751121-128751201 71 4.08e-05 CCTCGACGGA GTCCTCCC CG chr1:151119469-151119549 64 4.08e-05 TGCGCGATCC GTCCTCCC TTCCCCTCC chr12:131531207-13153128 35 4.08e-05 CCTGGGCAGT GTCCTCCC TGGTGAGTGC chr17:48226634-48226714 33 4.08e-05 TGCCCGCAGA GTCCTCCC CGAGCCCACT chr5:146108-146188 48 4.08e-05 cccttccatg gtcctccc tcctctcccc chr1:6320812-6320892 29 4.08e-05 TCCCGCCGGG GTCCTCCC GTCCGTCCGC chr3:39168819-39168899 36 4.08e-05 TTCATCCTTA GTCCTCCC TATGTTCATT chr6:44244251-44244331 40 4.08e-05 GGCCCGCGCC GTCCTCCC GCCTGCCCCT chr5:394943-395023 47 4.08e-05 TTTGCCCCGA GTCCTCCC CAGCCTGGGG chr19:46916046-46916126 1 4.08e-05 . gtcctccc cgatctgcag chr9:137099429-137099509 29 4.08e-05 ctccccacct gtcctccc caccggtcct chr12:131530554-13153063 24 4.08e-05 CCTGGTCAGT GTCCTCCC TGGTCAGCAC chr15:89938777-89938857 9 4.08e-05 CCCCAGCT GTCCTCCC CTTGGTGCTC chr20:43329914-43329994 51 4.08e-05 tgcctggaaa gtcctccc tcccctcctc chr17:49017904-49017984 31 4.08e-05 ctggtctgca gtcctccc ttcagtcctc chr17:45889650-45889730 50 4.08e-05 ACTGCGAGCA GTCCTCCC GAGGGCAGTC chr7:151411457-151411537 58 4.08e-05 CCGGAGAGCC GTCCTCCC ATCCGCGACC chr8:41721960-41722040 37 4.08e-05 CGCGTGCTGA GTCCTCCC CACTCTCCCT chr22:19720242-19720322 39 7.98e-05 GCCTGGGGGA GTGCTCCC TGGAGCTGTG chr22:39473588-39473668 62 7.98e-05 GGCTGGGGTG GTGCTCCC GGCCCTGGGA chr19:1394450-1394530 16 7.98e-05 CCTGCGGACT GTGCTCCC TGTCTGGGGA chr17:27072176-27072256 42 7.98e-05 CCTGCCTCCG GTGCTCCC TCCCGCCGTG chr18:77676168-77676248 27 7.98e-05 CATACCCACG GTGCTCCC GTACCCGCGG chr20:60985028-60985108 33 7.98e-05 ACAGCCTTGA GTGCTCCC GGTGGAGTCC chr6:169687946-169688026 28 7.98e-05 TGGGGGGCAA GTGCTCCC TCCAGAGGCT chr5:150027700-150027780 12 7.98e-05 GTCCCTCAGA GTGCTCCC TTCAAGCCTC chr18:46468280-46468360 35 7.98e-05 TCCCACCCTG GTGCTCCC AGCCCCAGAC chr8:124286000-124286080 18 7.98e-05 CATTACTGGG GTGCTCCC TCCGGCGGCG chr19:859729-859809 65 7.98e-05 TAGGGGCGTG GTGCTCCC TTCCGTCA chr2:2635480-2635560 32 7.98e-05 AACGTTCTTG GTGCTCCC AGTCCTTGGA chr6:158453164-158453244 53 7.98e-05 GACGCGGGCT GTGCTCCC TGTGGGGGTG chr17:61520542-61520622 32 7.98e-05 TTCCCAGGCA GTGCTCCC CATCCCATGC chr16:57703001-57703081 55 7.98e-05 TCCCCCGTTA GTGCTCCC TCCTCAGTGC chr12:133209260-13320934 58 7.98e-05 CCTCACGGGG GTGCTCCC TGGAGCACTG chr9:135450506-135450586 39 7.98e-05 AGTCCTCCGG GTGCTCCC AGCCCAGGCC chr3:197252697-197252777 40 7.98e-05 GCAGGTCTCC GTGCTCCC TCTGCAGGTC chr21:47231205-47231285 69 7.98e-05 gattctagaa gtgctccc gttc chr5:54158017-54158097 45 7.98e-05 ctcatctgct gtgctccc caccacgcct chr5:131760727-131760807 22 7.98e-05 TAGGAGTGCT GTGCTCCC AGGACTCTCC chr17:38670400-38670480 56 7.98e-05 caggacctcc gtgctccc acttgctaga chr15:74700848-74700928 45 7.98e-05 TCTATCTGCA GTGCTCCC TACTGTCCCT chr17:64370159-64370239 13 7.98e-05 GGGGGCGGCA GTGCTCCC CTGGAAGGGG chr2:10916081-10916161 45 7.98e-05 CAGGCTGGGA GTGCTCCC AGTGTCCGTG chr10:6621234-6621314 3 7.98e-05 GA GTGCTCCC TCTTCCCTCC chr2:661210-661290 46 7.98e-05 CCTACCTGAA GTGCTCCC ACTCCTTTCA chr14:75895169-75895249 58 7.98e-05 GACAGCCGGG GTGCTCCC TCCTTCTCCC chr4:40859254-40859334 32 7.98e-05 CTCCCGTGAA GTGCTCCC GCTAGGTGCT chr22:39417740-39417820 65 7.98e-05 GGCCAGGCCG GTGCTCCC TGCCCTGA chr5:944532-944612 36 7.98e-05 CCTGCTCTCC GTGCTCCC TGCTCTGTGC chr8:50064146-50064226 29 7.98e-05 tgctcctgtg gtgctccc atggtgctcc chr11:94373130-94373210 4 7.98e-05 gaa gtgctccc tggcagagcc chr21:33557677-33557757 37 7.98e-05 tccagaggta gtgctccc acagggaggc chr12:131574111-13157419 36 7.98e-05 TGGCCAGTGA GTGCTCCC TACCTGATGG chr10:63831928-63832008 51 7.98e-05 tgaggaggcg gtgctccc tggctgctgc chr3:53876856-53876936 38 7.98e-05 GAGGCCAGGA GTGCTCCC AACAGTTCCT chr14:70014935-70015015 65 7.98e-05 CCCGCTCTCT GTGCTCCC TGCGCAGG chr7:44289413-44289493 63 1.02e-04 GGCTCGCCCA GTCCTCCT CAGCCTCCCC chr18:3452631-3452711 57 1.02e-04 CTCCTCCGCC GTCCTCCT CTAAAACTAC chr9:124991301-124991381 16 1.02e-04 cctcctcctt gtcctcct ccccctccAG chr20:60933632-60933712 44 1.02e-04 CCTCCGGCAG GTCCTCCT CCTGCGGTGC chr3:195887359-195887439 49 1.02e-04 CCCGGAGTGA GTCCTCCT TCTAGATGGA chr19:16178189-16178269 29 1.02e-04 AGCTGGCCAA GTCCTCCT GAGCAAGCGA chr3:5095896-5095976 11 1.67e-04 TCCCATGGGA GTGCTCCT GAGCCCTCCT chr15:41851319-41851399 44 1.67e-04 tcccgcagcc ctcctccc tcccgctccc chr9:132164308-132164388 71 1.67e-04 tgctcctcaa ctcctccc ca chr7:506193-506273 33 1.67e-04 CTCCATCAGC CTCCTCCc tcactctcct chr5:945186-945266 29 1.67e-04 TGTGCTTCCA GTGCTCCT TATATTCTCC chr22:45088162-45088242 25 1.67e-04 ccccctctcg gtgctcct cctcccgggg chr11:113420641-11342072 34 1.67e-04 GGAGAAGTGA CTCCTCCC AGACCTGGGC chr10:76823353-76823433 63 1.67e-04 ttcactggtt ctcctccc tcttgggtgc chr1:212641279-212641359 28 1.67e-04 TGCTCCCCAT GTGCTCCT CCAGCCAGCC chr2:224702287-224702367 37 1.67e-04 AGTGTGCAGA CTCCTCCC AGCGCGGCTG chr5:5271507-5271587 37 1.67e-04 CACACGGAGG CTCCTCCC TGCGCGGGCA chr7:158897294-158897374 26 1.67e-04 AGCACTCTCC CTCCTCCC GACAGCACCC chr20:59290433-59290513 7 1.67e-04 cttcag ctcctccc accaggctct chr2:131135176-131135256 26 1.67e-04 CCTTACTGGA GTGCTCCT CCCTACCCTC chr16:1426248-1426328 8 1.67e-04 GGCGCTC CTCCTCCC TCTCTCCAGG chr9:140427522-140427602 52 1.67e-04 CACCCCTAGA CTCCTCCC CAACAGTGTC chr20:31598958-31599038 55 1.67e-04 CACCGGGCAT GTGCTCCT GCCTGCTGGG chr15:80886897-80886977 66 1.67e-04 AGCACTCACC CTCCTCCC AATTGGA chr20:43934077-43934157 38 1.67e-04 TTCCGCTCCC CTCCTCCC ACTGGTGAGG chr16:85616111-85616191 61 1.67e-04 TCCTGGGTGG CTCCTCCC TCTGGTGGTC chr7:158178539-158178619 55 1.67e-04 ccctccttcc gtgctcct cctccctcct chr6:134436304-134436384 58 1.67e-04 AAGGAAGTGG CTCCTCCC GGGAGGACTC chr5:149918857-149918937 47 1.67e-04 CTTCCTCACC GTGCTCCT CAATCCTGTG chr17:74664245-74664325 29 1.67e-04 acagctctcc ctcctccc tgcgctgagt chr6:136682161-136682241 3 1.67e-04 GC CTCCTCCC GCTCGCGCAG chr6:2782735-2782815 37 1.67e-04 CACAGACCAG GTGCTCCT CTGGGAGGAG chr21:44464753-44464833 31 1.67e-04 GCCAGCCAGG GTGCTCCT GCAGGAGACA chr16:49384514-49384594 3 1.67e-04 CC CTCCTCCC TCTCATTCCT chr9:140428824-140428904 18 1.67e-04 CACTTCCAGG CTCCTCCC CAACAGTGTC chr11:63865324-63865404 45 1.67e-04 TCTCTTGGTG GTGCTCCT GGGAGCACTC chr17:17472130-17472210 33 1.67e-04 cctcctcttc ctcctccC AGGAGCCAGG chr7:505993-506073 39 1.67e-04 ctccctcacc ctcctccc tcaccctcct chr7:151505986-151506066 72 1.67e-04 CGCGCTCCCC CTCCTCCC C chr8:21996056-21996136 65 1.67e-04 CAGCAGAGCC CTCCTCCC TCCTGTCG chr16:141508-141588 36 1.67e-04 GCACCAGCAG CTCCTCCC TAAGCACTGC chr21:46315957-46316037 62 2.07e-04 TGCGGTGTGA CTGCTCCC GCCTGTGGTG chr19:8650907-8650987 9 2.07e-04 GCACTAAT CTGCTCCC CACCCCCCTG chr16:455949-456029 43 2.52e-04 CTTCAGAACA GTCCTCCA CGCCAGCCCC chr10:21805427-21805507 41 2.52e-04 CGCTGCcccc ctcctcct cctcttcctc chr1:54628815-54628895 49 2.52e-04 CCCTCAACAG GTCCTCCA TCAGGAAAGA chr21:46808956-46809036 29 2.52e-04 AAACAAGTGA GTCCTCCA CTGAGCACGG chr8:10512382-10512462 27 2.52e-04 CTGACTCACC GTCCTCCA GGGAGCACAA chrX:25031317-25031397 45 2.52e-04 cctccagcag ctcctcct cgtcgtcctc chr7:675825-675905 44 2.52e-04 GCGCCCACAC GTCCTCCA CCGGCCGCGC chr18:48723283-48723363 24 2.52e-04 cctccagctc ctcctcct ccagcaggtc chr11:742703-742783 19 2.95e-04 TTGGTGGGTA GTGCTCCA CTTTGTATAG chr17:79703025-79703105 65 2.95e-04 CCCGAGTCAG CTGCTCCT GCGGGTGC chr11:326787-326867 5 2.95e-04 GCCA CTGCTCCT GCCCCACAGC chr3:184098093-184098173 47 2.95e-04 GGCCCCGCTG CTGCTCCT CGGGCTGCTG chr19:3647311-3647391 52 2.95e-04 CCTTCCAGGT GTGCTCCA GTTTCTTGAT chr1:154724933-154725013 11 2.95e-04 GAGAATGGGA GTGCTCCA GGTGGAGGAC chr4:918549-918629 27 3.39e-04 AGGATAGTGA GTGCTCTC CTGTGAGATC chr9:71790177-71790257 17 3.61e-04 CCAGCGGAGA GTCATCCC ATGATAGAAA chr7:4875195-4875275 12 3.61e-04 CTTCCCCCAA GTCATCCC CAAAACTGTG chr8:141517487-141517567 32 4.04e-04 tgtgcaggtg gtgatccc tataacccca chr6:16761589-16761669 28 4.25e-04 GCTCTGGCTG CTGCTCCA CGGGGCTTGT chr12:57568630-57568710 47 4.61e-04 GCCTTATCTG GTCCTCTT AGCCAGGCAG chr21:46347937-46348017 41 4.61e-04 GGGAGCACAG TTCCTCCC TCCTCTGCCT chr19:1746407-1746487 36 4.61e-04 gcatcaagtt ttcctccc cagtgggaga chr1:9896072-9896152 52 4.61e-04 GTGAATCTCC TTCCTCCC CTGGTCCTTG chr17:47950284-47950364 14 5.19e-04 CCACACTTGT CTCCTCTC TGACACCATC chr19:39014018-39014098 68 5.19e-04 CCCCTCTTAC ctcctctc cctct chr21:46833918-46833998 11 5.42e-04 TGAACCATCT CTGCTCTC TGAGCCTTGG chr11:64616020-64616100 38 5.87e-04 CAGCCTCTCA CTCATCCC GCAAGCCCCT chr17:75318911-75318991 10 6.09e-04 AGAGCTGCT CTGATCCC CAAGCATGCT chr10:105455619-10545569 46 6.59e-04 ggtgtgggct ctcctctt gcaggtgaga chr14:96152506-96152586 39 6.82e-04 CCTAACTCCG CTGCTCTT TGGCCTCGTC chr1:202135188-202135268 68 7.06e-04 ATTCTCACTC CTCATCCT CAGCT chr7:75619587-75619667 25 8.00e-04 AGCCTGACTC CTGCTCTA TGGGGAGCAC -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GTSCTCCC MEME-2 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr2:10902941-10903021 4.1e-05 8_[+2]_64 chr19:47582727-47582807 4.1e-05 50_[+2]_22 chr7:5495102-5495182 4.1e-05 56_[+2]_16 chr11:1947925-1948005 4.1e-05 52_[+2]_20 chr22:19722509-19722589 4.1e-05 49_[+2]_23 chr17:29879725-29879805 4.1e-05 11_[+2]_61 chr3:194828446-194828526 4.1e-05 23_[+2]_49 chr14:24800630-24800710 4.1e-05 52_[+2]_20 chr5:1473156-1473236 4.1e-05 36_[+2]_36 chr6:34430394-34430474 4.1e-05 55_[+2]_17 chr8:128751121-128751201 4.1e-05 70_[+2]_2 chr1:151119469-151119549 4.1e-05 63_[+2]_9 chr12:131531207-13153128 4.1e-05 34_[+2]_38 chr17:48226634-48226714 4.1e-05 32_[+2]_40 chr5:146108-146188 4.1e-05 47_[+2]_25 chr1:6320812-6320892 4.1e-05 28_[+2]_44 chr3:39168819-39168899 4.1e-05 35_[+2]_37 chr6:44244251-44244331 4.1e-05 39_[+2]_33 chr5:394943-395023 4.1e-05 46_[+2]_26 chr19:46916046-46916126 4.1e-05 [+2]_72 chr9:137099429-137099509 4.1e-05 28_[+2]_44 chr12:131530554-13153063 4.1e-05 23_[+2]_49 chr15:89938777-89938857 4.1e-05 8_[+2]_64 chr20:43329914-43329994 4.1e-05 50_[+2]_22 chr17:49017904-49017984 4.1e-05 30_[+2]_42 chr17:45889650-45889730 4.1e-05 49_[+2]_23 chr7:151411457-151411537 4.1e-05 57_[+2]_15 chr8:41721960-41722040 4.1e-05 36_[+2]_36 chr22:19720242-19720322 8e-05 38_[+2]_34 chr22:39473588-39473668 8e-05 61_[+2]_11 chr19:1394450-1394530 8e-05 15_[+2]_57 chr17:27072176-27072256 8e-05 41_[+2]_31 chr18:77676168-77676248 8e-05 26_[+2]_46 chr20:60985028-60985108 8e-05 32_[+2]_40 chr6:169687946-169688026 8e-05 27_[+2]_45 chr5:150027700-150027780 8e-05 11_[+2]_61 chr18:46468280-46468360 8e-05 34_[+2]_38 chr8:124286000-124286080 8e-05 17_[+2]_55 chr19:859729-859809 8e-05 64_[+2]_8 chr2:2635480-2635560 8e-05 31_[+2]_41 chr6:158453164-158453244 8e-05 52_[+2]_20 chr17:61520542-61520622 8e-05 31_[+2]_41 chr16:57703001-57703081 8e-05 54_[+2]_18 chr12:133209260-13320934 8e-05 57_[+2]_15 chr9:135450506-135450586 8e-05 38_[+2]_34 chr3:197252697-197252777 8e-05 39_[+2]_33 chr21:47231205-47231285 8e-05 68_[+2]_4 chr5:54158017-54158097 8e-05 44_[+2]_28 chr5:131760727-131760807 8e-05 21_[+2]_51 chr17:38670400-38670480 8e-05 55_[+2]_17 chr15:74700848-74700928 8e-05 44_[+2]_28 chr17:64370159-64370239 8e-05 12_[+2]_60 chr2:10916081-10916161 8e-05 44_[+2]_28 chr10:6621234-6621314 8e-05 2_[+2]_70 chr2:661210-661290 8e-05 45_[+2]_27 chr14:75895169-75895249 8e-05 57_[+2]_15 chr4:40859254-40859334 8e-05 31_[+2]_41 chr22:39417740-39417820 8e-05 64_[+2]_8 chr5:944532-944612 8e-05 35_[+2]_37 chr8:50064146-50064226 8e-05 28_[+2]_44 chr11:94373130-94373210 8e-05 3_[+2]_69 chr21:33557677-33557757 8e-05 36_[+2]_36 chr12:131574111-13157419 8e-05 35_[+2]_37 chr10:63831928-63832008 8e-05 50_[+2]_22 chr3:53876856-53876936 8e-05 37_[+2]_35 chr14:70014935-70015015 8e-05 64_[+2]_8 chr7:44289413-44289493 0.0001 62_[+2]_10 chr18:3452631-3452711 0.0001 56_[+2]_16 chr9:124991301-124991381 0.0001 15_[+2]_57 chr20:60933632-60933712 0.0001 43_[+2]_29 chr3:195887359-195887439 0.0001 48_[+2]_24 chr19:16178189-16178269 0.0001 28_[+2]_44 chr3:5095896-5095976 0.00017 10_[+2]_62 chr15:41851319-41851399 0.00017 43_[+2]_29 chr9:132164308-132164388 0.00017 70_[+2]_2 chr7:506193-506273 0.00017 32_[+2]_40 chr5:945186-945266 0.00017 28_[+2]_44 chr22:45088162-45088242 0.00017 24_[+2]_48 chr11:113420641-11342072 0.00017 33_[+2]_39 chr10:76823353-76823433 0.00017 62_[+2]_10 chr1:212641279-212641359 0.00017 27_[+2]_45 chr2:224702287-224702367 0.00017 36_[+2]_36 chr5:5271507-5271587 0.00017 36_[+2]_36 chr7:158897294-158897374 0.00017 25_[+2]_47 chr20:59290433-59290513 0.00017 6_[+2]_66 chr2:131135176-131135256 0.00017 25_[+2]_47 chr16:1426248-1426328 0.00017 7_[+2]_65 chr9:140427522-140427602 0.00017 51_[+2]_21 chr20:31598958-31599038 0.00017 54_[+2]_18 chr15:80886897-80886977 0.00017 65_[+2]_7 chr20:43934077-43934157 0.00017 37_[+2]_35 chr16:85616111-85616191 0.00017 60_[+2]_12 chr7:158178539-158178619 0.00017 54_[+2]_18 chr6:134436304-134436384 0.00017 57_[+2]_15 chr5:149918857-149918937 0.00017 46_[+2]_26 chr17:74664245-74664325 0.00017 28_[+2]_44 chr6:136682161-136682241 0.00017 2_[+2]_70 chr6:2782735-2782815 0.00017 36_[+2]_36 chr21:44464753-44464833 0.00017 30_[+2]_42 chr16:49384514-49384594 0.00017 2_[+2]_70 chr9:140428824-140428904 0.00017 17_[+2]_55 chr11:63865324-63865404 0.00017 44_[+2]_28 chr17:17472130-17472210 0.00017 32_[+2]_40 chr7:505993-506073 0.00017 38_[+2]_34 chr7:151505986-151506066 0.00017 71_[+2]_1 chr8:21996056-21996136 0.00017 64_[+2]_8 chr16:141508-141588 0.00017 35_[+2]_37 chr21:46315957-46316037 0.00021 61_[+2]_11 chr19:8650907-8650987 0.00021 8_[+2]_64 chr16:455949-456029 0.00025 42_[+2]_30 chr10:21805427-21805507 0.00025 40_[+2]_32 chr1:54628815-54628895 0.00025 48_[+2]_24 chr21:46808956-46809036 0.00025 28_[+2]_44 chr8:10512382-10512462 0.00025 26_[+2]_46 chrX:25031317-25031397 0.00025 44_[+2]_28 chr7:675825-675905 0.00025 43_[+2]_29 chr18:48723283-48723363 0.00025 23_[+2]_49 chr11:742703-742783 0.0003 18_[+2]_54 chr17:79703025-79703105 0.0003 64_[+2]_8 chr11:326787-326867 0.0003 4_[+2]_68 chr3:184098093-184098173 0.0003 46_[+2]_26 chr19:3647311-3647391 0.0003 51_[+2]_21 chr1:154724933-154725013 0.0003 10_[+2]_62 chr4:918549-918629 0.00034 26_[+2]_46 chr9:71790177-71790257 0.00036 16_[+2]_56 chr7:4875195-4875275 0.00036 11_[+2]_61 chr8:141517487-141517567 0.0004 31_[+2]_41 chr6:16761589-16761669 0.00043 27_[+2]_45 chr12:57568630-57568710 0.00046 46_[+2]_26 chr21:46347937-46348017 0.00046 40_[+2]_32 chr19:1746407-1746487 0.00046 35_[+2]_37 chr1:9896072-9896152 0.00046 51_[+2]_21 chr17:47950284-47950364 0.00052 13_[+2]_59 chr19:39014018-39014098 0.00052 67_[+2]_5 chr21:46833918-46833998 0.00054 10_[+2]_62 chr11:64616020-64616100 0.00059 37_[+2]_35 chr17:75318911-75318991 0.00061 9_[+2]_63 chr10:105455619-10545569 0.00066 45_[+2]_27 chr14:96152506-96152586 0.00068 38_[+2]_34 chr1:202135188-202135268 0.00071 67_[+2]_5 chr7:75619587-75619667 0.0008 24_[+2]_48 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GTSCTCCC MEME-2 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF GTSCTCCC width=8 seqs=141 chr2:10902941-10903021 ( 9) GTCCTCCC 1 chr19:47582727-47582807 ( 51) GTCCTCCC 1 chr7:5495102-5495182 ( 57) GTCCTCCC 1 chr11:1947925-1948005 ( 53) GTCCTCCC 1 chr22:19722509-19722589 ( 50) GTCCTCCC 1 chr17:29879725-29879805 ( 12) GTCCTCCC 1 chr3:194828446-194828526 ( 24) GTCCTCCC 1 chr14:24800630-24800710 ( 53) GTCCTCCC 1 chr5:1473156-1473236 ( 37) GTCCTCCC 1 chr6:34430394-34430474 ( 56) GTCCTCCC 1 chr8:128751121-128751201 ( 71) GTCCTCCC 1 chr1:151119469-151119549 ( 64) GTCCTCCC 1 chr12:131531207-13153128 ( 35) GTCCTCCC 1 chr17:48226634-48226714 ( 33) GTCCTCCC 1 chr5:146108-146188 ( 48) GTCCTCCC 1 chr1:6320812-6320892 ( 29) GTCCTCCC 1 chr3:39168819-39168899 ( 36) GTCCTCCC 1 chr6:44244251-44244331 ( 40) GTCCTCCC 1 chr5:394943-395023 ( 47) GTCCTCCC 1 chr19:46916046-46916126 ( 1) GTCCTCCC 1 chr9:137099429-137099509 ( 29) GTCCTCCC 1 chr12:131530554-13153063 ( 24) GTCCTCCC 1 chr15:89938777-89938857 ( 9) GTCCTCCC 1 chr20:43329914-43329994 ( 51) GTCCTCCC 1 chr17:49017904-49017984 ( 31) GTCCTCCC 1 chr17:45889650-45889730 ( 50) GTCCTCCC 1 chr7:151411457-151411537 ( 58) GTCCTCCC 1 chr8:41721960-41722040 ( 37) GTCCTCCC 1 chr22:19720242-19720322 ( 39) GTGCTCCC 1 chr22:39473588-39473668 ( 62) GTGCTCCC 1 chr19:1394450-1394530 ( 16) GTGCTCCC 1 chr17:27072176-27072256 ( 42) GTGCTCCC 1 chr18:77676168-77676248 ( 27) GTGCTCCC 1 chr20:60985028-60985108 ( 33) GTGCTCCC 1 chr6:169687946-169688026 ( 28) GTGCTCCC 1 chr5:150027700-150027780 ( 12) GTGCTCCC 1 chr18:46468280-46468360 ( 35) GTGCTCCC 1 chr8:124286000-124286080 ( 18) GTGCTCCC 1 chr19:859729-859809 ( 65) GTGCTCCC 1 chr2:2635480-2635560 ( 32) GTGCTCCC 1 chr6:158453164-158453244 ( 53) GTGCTCCC 1 chr17:61520542-61520622 ( 32) GTGCTCCC 1 chr16:57703001-57703081 ( 55) GTGCTCCC 1 chr12:133209260-13320934 ( 58) GTGCTCCC 1 chr9:135450506-135450586 ( 39) GTGCTCCC 1 chr3:197252697-197252777 ( 40) GTGCTCCC 1 chr21:47231205-47231285 ( 69) GTGCTCCC 1 chr5:54158017-54158097 ( 45) GTGCTCCC 1 chr5:131760727-131760807 ( 22) GTGCTCCC 1 chr17:38670400-38670480 ( 56) GTGCTCCC 1 chr15:74700848-74700928 ( 45) GTGCTCCC 1 chr17:64370159-64370239 ( 13) GTGCTCCC 1 chr2:10916081-10916161 ( 45) GTGCTCCC 1 chr10:6621234-6621314 ( 3) GTGCTCCC 1 chr2:661210-661290 ( 46) GTGCTCCC 1 chr14:75895169-75895249 ( 58) GTGCTCCC 1 chr4:40859254-40859334 ( 32) GTGCTCCC 1 chr22:39417740-39417820 ( 65) GTGCTCCC 1 chr5:944532-944612 ( 36) GTGCTCCC 1 chr8:50064146-50064226 ( 29) GTGCTCCC 1 chr11:94373130-94373210 ( 4) GTGCTCCC 1 chr21:33557677-33557757 ( 37) GTGCTCCC 1 chr12:131574111-13157419 ( 36) GTGCTCCC 1 chr10:63831928-63832008 ( 51) GTGCTCCC 1 chr3:53876856-53876936 ( 38) GTGCTCCC 1 chr14:70014935-70015015 ( 65) GTGCTCCC 1 chr7:44289413-44289493 ( 63) GTCCTCCT 1 chr18:3452631-3452711 ( 57) GTCCTCCT 1 chr9:124991301-124991381 ( 16) GTCCTCCT 1 chr20:60933632-60933712 ( 44) GTCCTCCT 1 chr3:195887359-195887439 ( 49) GTCCTCCT 1 chr19:16178189-16178269 ( 29) GTCCTCCT 1 chr3:5095896-5095976 ( 11) GTGCTCCT 1 chr15:41851319-41851399 ( 44) CTCCTCCC 1 chr9:132164308-132164388 ( 71) CTCCTCCC 1 chr7:506193-506273 ( 33) CTCCTCCC 1 chr5:945186-945266 ( 29) GTGCTCCT 1 chr22:45088162-45088242 ( 25) GTGCTCCT 1 chr11:113420641-11342072 ( 34) CTCCTCCC 1 chr10:76823353-76823433 ( 63) CTCCTCCC 1 chr1:212641279-212641359 ( 28) GTGCTCCT 1 chr2:224702287-224702367 ( 37) CTCCTCCC 1 chr5:5271507-5271587 ( 37) CTCCTCCC 1 chr7:158897294-158897374 ( 26) CTCCTCCC 1 chr20:59290433-59290513 ( 7) CTCCTCCC 1 chr2:131135176-131135256 ( 26) GTGCTCCT 1 chr16:1426248-1426328 ( 8) CTCCTCCC 1 chr9:140427522-140427602 ( 52) CTCCTCCC 1 chr20:31598958-31599038 ( 55) GTGCTCCT 1 chr15:80886897-80886977 ( 66) CTCCTCCC 1 chr20:43934077-43934157 ( 38) CTCCTCCC 1 chr16:85616111-85616191 ( 61) CTCCTCCC 1 chr7:158178539-158178619 ( 55) GTGCTCCT 1 chr6:134436304-134436384 ( 58) CTCCTCCC 1 chr5:149918857-149918937 ( 47) GTGCTCCT 1 chr17:74664245-74664325 ( 29) CTCCTCCC 1 chr6:136682161-136682241 ( 3) CTCCTCCC 1 chr6:2782735-2782815 ( 37) GTGCTCCT 1 chr21:44464753-44464833 ( 31) GTGCTCCT 1 chr16:49384514-49384594 ( 3) CTCCTCCC 1 chr9:140428824-140428904 ( 18) CTCCTCCC 1 chr11:63865324-63865404 ( 45) GTGCTCCT 1 chr17:17472130-17472210 ( 33) CTCCTCCC 1 chr7:505993-506073 ( 39) CTCCTCCC 1 chr7:151505986-151506066 ( 72) CTCCTCCC 1 chr8:21996056-21996136 ( 65) CTCCTCCC 1 chr16:141508-141588 ( 36) CTCCTCCC 1 chr21:46315957-46316037 ( 62) CTGCTCCC 1 chr19:8650907-8650987 ( 9) CTGCTCCC 1 chr16:455949-456029 ( 43) GTCCTCCA 1 chr10:21805427-21805507 ( 41) CTCCTCCT 1 chr1:54628815-54628895 ( 49) GTCCTCCA 1 chr21:46808956-46809036 ( 29) GTCCTCCA 1 chr8:10512382-10512462 ( 27) GTCCTCCA 1 chrX:25031317-25031397 ( 45) CTCCTCCT 1 chr7:675825-675905 ( 44) GTCCTCCA 1 chr18:48723283-48723363 ( 24) CTCCTCCT 1 chr11:742703-742783 ( 19) GTGCTCCA 1 chr17:79703025-79703105 ( 65) CTGCTCCT 1 chr11:326787-326867 ( 5) CTGCTCCT 1 chr3:184098093-184098173 ( 47) CTGCTCCT 1 chr19:3647311-3647391 ( 52) GTGCTCCA 1 chr1:154724933-154725013 ( 11) GTGCTCCA 1 chr4:918549-918629 ( 27) GTGCTCTC 1 chr9:71790177-71790257 ( 17) GTCATCCC 1 chr7:4875195-4875275 ( 12) GTCATCCC 1 chr8:141517487-141517567 ( 32) GTGATCCC 1 chr6:16761589-16761669 ( 28) CTGCTCCA 1 chr12:57568630-57568710 ( 47) GTCCTCTT 1 chr21:46347937-46348017 ( 41) TTCCTCCC 1 chr19:1746407-1746487 ( 36) TTCCTCCC 1 chr1:9896072-9896152 ( 52) TTCCTCCC 1 chr17:47950284-47950364 ( 14) CTCCTCTC 1 chr19:39014018-39014098 ( 68) CTCCTCTC 1 chr21:46833918-46833998 ( 11) CTGCTCTC 1 chr11:64616020-64616100 ( 38) CTCATCCC 1 chr17:75318911-75318991 ( 10) CTGATCCC 1 chr10:105455619-10545569 ( 46) CTCCTCTT 1 chr14:96152506-96152586 ( 39) CTGCTCTT 1 chr1:202135188-202135268 ( 68) CTCATCCT 1 chr7:75619587-75619667 ( 25) CTGCTCTA 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GTSCTCCC MEME-2 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 18250 bayes= 7.83825 E= 4.2e-120 -1378 -15 111 -310 -1378 -1378 -1378 245 -1378 73 53 -1378 -202 154 -1378 -1378 -1378 -1378 -1378 245 -1378 160 -1378 -1378 -1378 151 -1378 -168 -128 116 -1378 7 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GTSCTCCC MEME-2 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 141 E= 4.2e-120 0.000000 0.297872 0.680851 0.021277 0.000000 0.000000 0.000000 1.000000 0.000000 0.546099 0.453901 0.000000 0.042553 0.957447 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.943262 0.000000 0.056738 0.070922 0.737589 0.000000 0.191489 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GTSCTCCC MEME-2 regular expression -------------------------------------------------------------------------------- [GC]T[CG]CTCCC -------------------------------------------------------------------------------- Time 8.46 secs. ******************************************************************************** ******************************************************************************** MOTIF GRGGAGSA MEME-3 width = 8 sites = 79 llr = 627 E-value = 5.1e-039 ******************************************************************************** -------------------------------------------------------------------------------- Motif GRGGAGSA MEME-3 Description -------------------------------------------------------------------------------- Simplified A 261:a::9 pos.-specific C 1:::::4: probability G 649a:a61 matrix T 1::::::: bits 2.5 * 2.3 * 2.0 * * 1.8 *** * Relative 1.5 *** * Entropy 1.3 ***** * (11.5 bits) 1.0 ***** * 0.8 ******* 0.5 ******** 0.3 ******** 0.0 -------- Multilevel GAGGAGGA consensus AG C sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GRGGAGSA MEME-3 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr13:114238860-11423894 69 1.61e-05 AGCAGAAGAG GAGGAGGA GGGC chr9:80646904-80646984 4 1.61e-05 gag gaggagga agaggcggag chr21:46833918-46833998 54 1.61e-05 ggaggaggtg gaggagga ggatcgggag chr10:121302213-12130229 7 1.61e-05 ggcgag gaggagga ggagggcgag chr16:30671191-30671271 33 1.61e-05 ggagcctgag gaggagga agaggaggag chr19:1164627-1164707 8 1.61e-05 ggaggag gaggagga ggaacaggag chr1:3187404-3187484 39 1.61e-05 GACAGTCCAG GAGGAGGA CCGTTGGGAG chr17:38670400-38670480 6 1.61e-05 ctgcc gaggagga ggtgagcagc chr11:114122417-11412249 49 1.61e-05 CCACAGTGGA gaggagga ggaggaggag chr17:39796029-39796109 34 1.61e-05 aggaccaggg gaggagga CTGGGGGAGG chr12:2025704-2025784 39 1.61e-05 GCAGGCAGAG GAGGAGGA GCACTTGAGG chr9:135061258-135061338 28 1.61e-05 ggagggaaag gaggagga gCAGCAGCGG chr7:312075-312155 55 1.61e-05 TGAGGATGTG GAGGAGGA GCGGCACCTG chr20:62151308-62151388 17 1.61e-05 GCGCTGGGGG GAGGAGGA GAGGGAGGAC chr12:122241859-12224193 1 1.61e-05 . gaggagga ggaggaagag chr17:75318911-75318991 35 1.61e-05 GCTCTGGCCT GAGGAGGA GCCATGGGGA chr19:52192309-52192389 30 1.61e-05 gagactggcc gaggagga gggcgggcga chr9:136356247-136356327 36 1.61e-05 ggaggacttg gaggagga gggagggagg chrX:128770218-128770298 56 1.61e-05 GGGCTGGGCG GAGGAGGA GCCCAGCATG chr5:5308585-5308665 36 2.49e-05 AGCCCATCCC AAGGAGGA GGGAGCACCC chr14:75721752-75721832 25 2.49e-05 GGAGAAGAGG AAGGAGGA GCTGGTTGTA chr7:1115919-1115999 39 2.49e-05 GAGCACCGCC AAGGAGGA GCAGGCCAGG chr1:178482562-178482642 22 4.17e-05 CTCTGGGGAT GAGGAGCA CTGCCAAGGG chr22:42680056-42680136 52 4.17e-05 GGTGGAGATG GAGGAGCA GCGGGGAGGA chr1:206654732-206654812 59 4.17e-05 CTGGGAGGTG GAGGAGCA GGGAGGAGGA chr5:1472288-1472368 29 4.17e-05 GAGGCGAGGT GAGGAGCA CCCAGGGGCG chrX:102884937-102885017 10 4.17e-05 CAGTCCCCC GAGGAGCA GTCTTCGGAG chr18:55574215-55574295 64 5.09e-05 CTTCAAGGCA AAGGAGCA TTCACTCtg chr7:5494899-5494979 55 5.09e-05 TAGCACTCTC AAGGAGCA CTCAGGGCAC chr3:195887359-195887439 21 5.09e-05 GCACCTCCCT AAGGAGCA CTCCCTCTTT chr16:88374258-88374338 43 8.02e-05 GCAGGTGCGT GGGGAGGA GTCCCGCTGG chr16:85616111-85616191 26 8.02e-05 TCCTTGGCGA GGGGAGGA GCCCTGCCTG chr20:61155212-61155292 49 8.02e-05 CTCTGCCTTT GGGGAGGA CTCTGCCTTT chr17:37871769-37871849 49 8.02e-05 GGGGCCTGAT GGGGAGGA GTCCCAGGGA chr6:32077073-32077153 60 8.02e-05 GCAGCGAGCA GGGGAGGA GAAGGGGAGG chr19:1746407-1746487 2 8.95e-05 g taggagga TCCTCACcct chr1:181318791-181318871 43 1.06e-04 AGGCCTGTGT AGGGAGGA CTCCAGGCTG chr17:47950284-47950364 49 1.06e-04 CTTCAGTGGC AGGGAGGA GTGCAAAGTG chr22:36970032-36970112 34 1.06e-04 ggagcactga agggagga gccagtggag chr17:64370159-64370239 53 1.06e-04 GGAGTCCGCA AGGGAGGA TGGGCCAGGG chr15:25978514-25978594 15 1.06e-04 GCCCTACAGG AGGGAGGA TTCCTGCCCG chr15:77925212-77925292 73 1.06e-04 ggagggatcg agggagga chr16:455949-456029 13 1.36e-04 TGGTCAGGAA GGGGAGCA GGGAGCACCC chr21:47363692-47363772 57 1.36e-04 AGGTGGAGGT GGGGAGCA CTCCAGGTGG chr9:129466487-129466567 41 1.36e-04 GGGAGCACTC GGGGAGCA CTCCCACGCA chr10:134699268-13469934 2 1.36e-04 G GGGGAGCA CTCAGGCGGT chr12:114104218-11410429 8 1.36e-04 AGCTCTC GGGGAGCA CTTGGGgagc chr13:114451655-11445173 24 1.36e-04 tgcacagcga GGGGAGCA CAGCCATGGG chr11:326787-326867 66 1.45e-04 AGCACTGACT GAAGAGGA GGCTGTC chr7:44347023-44347103 36 1.45e-04 GAGGGTGTGT GAAGAGGA GGGTTTCAGG chr1:29214920-29215000 32 1.72e-04 AAGGGATCTG CAGGAGGA GGCTCAAGGG chr5:6322287-6322367 65 1.72e-04 TATTTCACAG TAGGAGCA CAGTCTCG chr1:26207156-26207236 27 1.72e-04 CACGGTGCAG TAGGAGCA CAGAGCAGTG chr22:50084278-50084358 37 1.72e-04 CACTCAGCCA CAGGAGGA GGGAGCCTGG chr1:1237732-1237812 19 1.88e-04 TCCCTGCAGC AGGGAGCA CTCAGCCAGA chr5:172698465-172698545 35 1.88e-04 TGCAGGCAGA AGGGAGCA CCAGTGGGGA chr12:133164489-13316456 44 1.88e-04 GCACTCTGTG AGGGAGCA CCCTCCTGGG chr5:394943-395023 27 1.88e-04 GCACCGTGGG AGGGAGCA CTTTTGCCCC chr16:759170-759250 33 2.20e-04 GAACCCCTAC CAGGAGCA TACTTCACCG chr4:8272839-8272919 53 2.20e-04 CGTGGAGCCT CAGGAGCA CCATGGGGAG chr9:140428824-140428904 67 2.20e-04 CAGACTCAGA CAGGAGCA CTCCCA chr7:75619587-75619667 48 2.20e-04 AGCACTATGC CAGGAGCA CTGTGCCGGG chr17:6366201-6366281 44 2.37e-04 TGGAAGGCAG TGGGAGGA TCATGGACCC chr4:40267374-40267454 52 2.42e-04 GGCAGAAGAG AAAGAGCA GAGCCTTAGG chr19:3647111-3647191 20 2.71e-04 GGCACTCACA GAGGAGGG ATGGGAGGAG chr6:168507116-168507196 58 2.71e-04 ATGGAGGACG GAGGAGGG ACGAGGGTGG chr14:75746158-75746238 40 2.71e-04 CTGGAGCACG GAGGAGGG ATGAGGGAGG chr7:558719-558799 32 2.71e-04 GCGCGGCCCG GAGGAGGG TGGCGCGGGG chr8:49427646-49427726 6 2.71e-04 CTCGG GAGGAGGG TTTTGGGGAG chr8:144871465-144871545 2 2.71e-04 g gaggaggg ggagccgagg chr17:75731418-75731498 50 2.97e-04 TCACAGCCAG GATGAGGA GTCCGTAGGT chr17:80268245-80268325 18 2.97e-04 GCATGGAGGA GATGAGGA GGGGAGGAGG chr15:27334414-27334494 9 2.97e-04 CTTGGATT GGAGAGGA CAGCTCGTCT chr6:32981525-32981605 1 3.45e-04 . TGGGAGCA CTAGGAGGCG chr7:4875195-4875275 70 3.45e-04 ACCCCCAGTG TGGGAGCA CTG chr10:104504487-10450456 64 4.37e-04 GGCTGGCCTG GGAGAGCA AGTCACGGA chr1:87381311-87381391 31 4.37e-04 CTGGGATGAC GGAGAGCA ACATGTGAAC chr1:117338218-117338298 65 4.69e-04 CACTCCTCAG CGGGAGCA CATCTCAG chr15:74700848-74700928 1 5.68e-04 . GGGGAGGG GAGGCCTCTG -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GRGGAGSA MEME-3 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr13:114238860-11423894 1.6e-05 68_[+3]_4 chr9:80646904-80646984 1.6e-05 3_[+3]_69 chr21:46833918-46833998 1.6e-05 53_[+3]_19 chr10:121302213-12130229 1.6e-05 6_[+3]_66 chr16:30671191-30671271 1.6e-05 32_[+3]_40 chr19:1164627-1164707 1.6e-05 7_[+3]_65 chr1:3187404-3187484 1.6e-05 38_[+3]_34 chr17:38670400-38670480 1.6e-05 5_[+3]_67 chr11:114122417-11412249 1.6e-05 48_[+3]_24 chr17:39796029-39796109 1.6e-05 33_[+3]_39 chr12:2025704-2025784 1.6e-05 38_[+3]_34 chr9:135061258-135061338 1.6e-05 27_[+3]_45 chr7:312075-312155 1.6e-05 54_[+3]_18 chr20:62151308-62151388 1.6e-05 16_[+3]_56 chr12:122241859-12224193 1.6e-05 [+3]_72 chr17:75318911-75318991 1.6e-05 34_[+3]_38 chr19:52192309-52192389 1.6e-05 29_[+3]_43 chr9:136356247-136356327 1.6e-05 35_[+3]_37 chrX:128770218-128770298 1.6e-05 55_[+3]_17 chr5:5308585-5308665 2.5e-05 35_[+3]_37 chr14:75721752-75721832 2.5e-05 24_[+3]_48 chr7:1115919-1115999 2.5e-05 38_[+3]_34 chr1:178482562-178482642 4.2e-05 21_[+3]_51 chr22:42680056-42680136 4.2e-05 51_[+3]_21 chr1:206654732-206654812 4.2e-05 58_[+3]_14 chr5:1472288-1472368 4.2e-05 28_[+3]_44 chrX:102884937-102885017 4.2e-05 9_[+3]_63 chr18:55574215-55574295 5.1e-05 63_[+3]_9 chr7:5494899-5494979 5.1e-05 54_[+3]_18 chr3:195887359-195887439 5.1e-05 20_[+3]_52 chr16:88374258-88374338 8e-05 42_[+3]_30 chr16:85616111-85616191 8e-05 25_[+3]_47 chr20:61155212-61155292 8e-05 48_[+3]_24 chr17:37871769-37871849 8e-05 48_[+3]_24 chr6:32077073-32077153 8e-05 59_[+3]_13 chr19:1746407-1746487 8.9e-05 1_[+3]_71 chr1:181318791-181318871 0.00011 42_[+3]_30 chr17:47950284-47950364 0.00011 48_[+3]_24 chr22:36970032-36970112 0.00011 33_[+3]_39 chr17:64370159-64370239 0.00011 52_[+3]_20 chr15:25978514-25978594 0.00011 14_[+3]_58 chr15:77925212-77925292 0.00011 72_[+3] chr16:455949-456029 0.00014 12_[+3]_60 chr21:47363692-47363772 0.00014 56_[+3]_16 chr9:129466487-129466567 0.00014 40_[+3]_32 chr10:134699268-13469934 0.00014 1_[+3]_71 chr12:114104218-11410429 0.00014 7_[+3]_65 chr13:114451655-11445173 0.00014 23_[+3]_49 chr11:326787-326867 0.00014 65_[+3]_7 chr7:44347023-44347103 0.00014 35_[+3]_37 chr1:29214920-29215000 0.00017 31_[+3]_41 chr5:6322287-6322367 0.00017 64_[+3]_8 chr1:26207156-26207236 0.00017 26_[+3]_46 chr22:50084278-50084358 0.00017 36_[+3]_36 chr1:1237732-1237812 0.00019 18_[+3]_54 chr5:172698465-172698545 0.00019 34_[+3]_38 chr12:133164489-13316456 0.00019 43_[+3]_29 chr5:394943-395023 0.00019 26_[+3]_46 chr16:759170-759250 0.00022 32_[+3]_40 chr4:8272839-8272919 0.00022 52_[+3]_20 chr9:140428824-140428904 0.00022 66_[+3]_6 chr7:75619587-75619667 0.00022 47_[+3]_25 chr17:6366201-6366281 0.00024 43_[+3]_29 chr4:40267374-40267454 0.00024 51_[+3]_21 chr19:3647111-3647191 0.00027 19_[+3]_53 chr6:168507116-168507196 0.00027 57_[+3]_15 chr14:75746158-75746238 0.00027 39_[+3]_33 chr7:558719-558799 0.00027 31_[+3]_41 chr8:49427646-49427726 0.00027 5_[+3]_67 chr8:144871465-144871545 0.00027 1_[+3]_71 chr17:75731418-75731498 0.0003 49_[+3]_23 chr17:80268245-80268325 0.0003 17_[+3]_55 chr15:27334414-27334494 0.0003 8_[+3]_64 chr6:32981525-32981605 0.00034 [+3]_72 chr7:4875195-4875275 0.00034 69_[+3]_3 chr10:104504487-10450456 0.00044 63_[+3]_9 chr1:87381311-87381391 0.00044 30_[+3]_42 chr1:117338218-117338298 0.00047 64_[+3]_8 chr15:74700848-74700928 0.00057 [+3]_72 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GRGGAGSA MEME-3 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF GRGGAGSA width=8 seqs=79 chr13:114238860-11423894 ( 69) GAGGAGGA 1 chr9:80646904-80646984 ( 4) GAGGAGGA 1 chr21:46833918-46833998 ( 54) GAGGAGGA 1 chr10:121302213-12130229 ( 7) GAGGAGGA 1 chr16:30671191-30671271 ( 33) GAGGAGGA 1 chr19:1164627-1164707 ( 8) GAGGAGGA 1 chr1:3187404-3187484 ( 39) GAGGAGGA 1 chr17:38670400-38670480 ( 6) GAGGAGGA 1 chr11:114122417-11412249 ( 49) GAGGAGGA 1 chr17:39796029-39796109 ( 34) GAGGAGGA 1 chr12:2025704-2025784 ( 39) GAGGAGGA 1 chr9:135061258-135061338 ( 28) GAGGAGGA 1 chr7:312075-312155 ( 55) GAGGAGGA 1 chr20:62151308-62151388 ( 17) GAGGAGGA 1 chr12:122241859-12224193 ( 1) GAGGAGGA 1 chr17:75318911-75318991 ( 35) GAGGAGGA 1 chr19:52192309-52192389 ( 30) GAGGAGGA 1 chr9:136356247-136356327 ( 36) GAGGAGGA 1 chrX:128770218-128770298 ( 56) GAGGAGGA 1 chr5:5308585-5308665 ( 36) AAGGAGGA 1 chr14:75721752-75721832 ( 25) AAGGAGGA 1 chr7:1115919-1115999 ( 39) AAGGAGGA 1 chr1:178482562-178482642 ( 22) GAGGAGCA 1 chr22:42680056-42680136 ( 52) GAGGAGCA 1 chr1:206654732-206654812 ( 59) GAGGAGCA 1 chr5:1472288-1472368 ( 29) GAGGAGCA 1 chrX:102884937-102885017 ( 10) GAGGAGCA 1 chr18:55574215-55574295 ( 64) AAGGAGCA 1 chr7:5494899-5494979 ( 55) AAGGAGCA 1 chr3:195887359-195887439 ( 21) AAGGAGCA 1 chr16:88374258-88374338 ( 43) GGGGAGGA 1 chr16:85616111-85616191 ( 26) GGGGAGGA 1 chr20:61155212-61155292 ( 49) GGGGAGGA 1 chr17:37871769-37871849 ( 49) GGGGAGGA 1 chr6:32077073-32077153 ( 60) GGGGAGGA 1 chr19:1746407-1746487 ( 2) TAGGAGGA 1 chr1:181318791-181318871 ( 43) AGGGAGGA 1 chr17:47950284-47950364 ( 49) AGGGAGGA 1 chr22:36970032-36970112 ( 34) AGGGAGGA 1 chr17:64370159-64370239 ( 53) AGGGAGGA 1 chr15:25978514-25978594 ( 15) AGGGAGGA 1 chr15:77925212-77925292 ( 73) AGGGAGGA 1 chr16:455949-456029 ( 13) GGGGAGCA 1 chr21:47363692-47363772 ( 57) GGGGAGCA 1 chr9:129466487-129466567 ( 41) GGGGAGCA 1 chr10:134699268-13469934 ( 2) GGGGAGCA 1 chr12:114104218-11410429 ( 8) GGGGAGCA 1 chr13:114451655-11445173 ( 24) GGGGAGCA 1 chr11:326787-326867 ( 66) GAAGAGGA 1 chr7:44347023-44347103 ( 36) GAAGAGGA 1 chr1:29214920-29215000 ( 32) CAGGAGGA 1 chr5:6322287-6322367 ( 65) TAGGAGCA 1 chr1:26207156-26207236 ( 27) TAGGAGCA 1 chr22:50084278-50084358 ( 37) CAGGAGGA 1 chr1:1237732-1237812 ( 19) AGGGAGCA 1 chr5:172698465-172698545 ( 35) AGGGAGCA 1 chr12:133164489-13316456 ( 44) AGGGAGCA 1 chr5:394943-395023 ( 27) AGGGAGCA 1 chr16:759170-759250 ( 33) CAGGAGCA 1 chr4:8272839-8272919 ( 53) CAGGAGCA 1 chr9:140428824-140428904 ( 67) CAGGAGCA 1 chr7:75619587-75619667 ( 48) CAGGAGCA 1 chr17:6366201-6366281 ( 44) TGGGAGGA 1 chr4:40267374-40267454 ( 52) AAAGAGCA 1 chr19:3647111-3647191 ( 20) GAGGAGGG 1 chr6:168507116-168507196 ( 58) GAGGAGGG 1 chr14:75746158-75746238 ( 40) GAGGAGGG 1 chr7:558719-558799 ( 32) GAGGAGGG 1 chr8:49427646-49427726 ( 6) GAGGAGGG 1 chr8:144871465-144871545 ( 2) GAGGAGGG 1 chr17:75731418-75731498 ( 50) GATGAGGA 1 chr17:80268245-80268325 ( 18) GATGAGGA 1 chr15:27334414-27334494 ( 9) GGAGAGGA 1 chr6:32981525-32981605 ( 1) TGGGAGCA 1 chr7:4875195-4875275 ( 70) TGGGAGCA 1 chr10:104504487-10450456 ( 64) GGAGAGCA 1 chr1:87381311-87381391 ( 31) GGAGAGCA 1 chr1:117338218-117338298 ( 65) CGGGAGCA 1 chr15:74700848-74700928 ( 1) GGGGAGGG 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GRGGAGSA MEME-3 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 18250 bayes= 10.0332 E= 5.1e-039 32 -190 98 -126 187 -1295 22 -1295 -119 -1295 151 -285 -1295 -1295 167 -1295 253 -1295 -1295 -1295 -1295 -1295 167 -1295 -1295 20 98 -1295 240 -1295 -183 -1295 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GRGGAGSA MEME-3 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 79 E= 5.1e-039 0.215190 0.088608 0.620253 0.075949 0.632911 0.000000 0.367089 0.000000 0.075949 0.000000 0.898734 0.025316 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.379747 0.620253 0.000000 0.911392 0.000000 0.088608 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GRGGAGSA MEME-3 regular expression -------------------------------------------------------------------------------- [GA][AG]GGAG[GC]A -------------------------------------------------------------------------------- Time 11.77 secs. ******************************************************************************** ******************************************************************************** MOTIF TCCTCCYY MEME-4 width = 8 sites = 79 llr = 594 E-value = 9.5e-024 ******************************************************************************** -------------------------------------------------------------------------------- Motif TCCTCCYY MEME-4 Description -------------------------------------------------------------------------------- Simplified A :::::::2 pos.-specific C :7a:9863 probability G :3::1::: matrix T a1:a:246 bits 2.5 * * 2.3 * * 2.0 * * 1.8 * * Relative 1.5 * ** Entropy 1.3 * ** (10.8 bits) 1.0 * ***** 0.8 * ****** 0.5 ******** 0.3 ******** 0.0 -------- Multilevel TCCTCCCT consensus G TC sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TCCTCCYY MEME-4 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr7:44289413-44289493 9 1.30e-05 GCCCTGTA TCCTCCTT CCTCCCCAGC chr1:212641279-212641359 57 1.30e-05 TCCATCCCTC TCCTCCTT GCTGGGGAGG chr18:3452631-3452711 18 1.30e-05 TACTTGCTTT TCCTCCTT GGGCCCCTCC chr5:146108-146188 24 1.30e-05 CACCATGGAG TCCTcctt ccactcccct chr19:46916046-46916126 38 1.30e-05 cgtggagtcc tcctcctt gcggaacacc chr9:124991301-124991381 8 1.30e-05 ctctccc tcctcctt gtcctcctcc chr6:136682161-136682241 52 1.30e-05 CTGCAGCTGC TCCTCCTT CTCCCGGGCC chr8:41721960-41722040 65 1.30e-05 CATCCCTGGC TCCTCCTT GCACATGA chr19:1394450-1394530 40 3.66e-05 GGGACTGCGC TCCTCCCT CCTTGGGGAC chr7:506193-506273 57 3.66e-05 tccttcaccc tcctccct caccctccac chr12:131531207-13153128 2 3.66e-05 G TCCTCCCT GGTCAGTGCC chr2:224702287-224702367 57 3.66e-05 CGCGGCTGCC TCCTCCCT GCACGCTCCT chr5:5271507-5271587 19 3.66e-05 ctcctcccgc tcctcccT CACACGGAGG chr16:1426248-1426328 55 3.66e-05 CCACTCTCCC TCCTCCCT CCAGGGCTGG chr12:131530554-13153063 9 3.66e-05 GGTGAGTG TCCTCCCT GGTCAGTGTC chr15:89938777-89938857 31 3.66e-05 GTGCTCCTCT TCCTCCCT CCTCCTGCTC chr17:45889650-45889730 28 3.66e-05 CTGCCTGCCC TCCTCCCT AGACACTGCG chr7:505993-506073 27 3.66e-05 AATGTCAGCC TCctccct caccctcctc chr5:944532-944612 60 5.62e-05 GTGCTCCCCA TGCTCCTT GTGTGCCCTG chr12:131574111-13157419 72 5.62e-05 GGCCAGTGAG TGCTCCTT G chr11:742703-742783 1 9.17e-05 . TGCTCCCT TTGGTGGGTA chr11:1947925-1948005 66 9.17e-05 CTCCCTTCTG TCCTCTCT TGCTTCC chr6:169687946-169688026 58 9.17e-05 AAGGGGGAAG TGCTCCCT CCAGAGGCTC chr5:1473156-1473236 3 9.17e-05 TC TCCTCTCT CCTGCTCCTC chr3:197252697-197252777 20 9.17e-05 AGGGTTTCTG TGCTCCCT CTGCAGGTCT chr6:44244251-44244331 68 9.17e-05 CGCCGGACTG TGCTCCCT CTGCG chr1:54628815-54628895 35 9.17e-05 AGGGGAGCAG TGCTCCCT CAACAGGTCC chr2:661210-661290 71 9.17e-05 TCAGTGCTCC TGCTCCCT GC chr3:5095896-5095976 25 1.27e-04 TCCTGAGCCC TCCTCCCA GGGATTTCTG chr7:158897294-158897374 48 1.27e-04 GCACCCTCCC TCCTCCCA GCAACACCCT chr7:158178539-158178619 27 1.27e-04 GATGTGCCCC TCCTCCCA TGCCCCGAGt chr17:49017904-49017984 44 1.27e-04 ctcccttcag tcctccca cagcggcctc chr20:60933632-60933712 62 1.27e-04 CCTGCGGTGC TCCTCCCA TTTACAGAGG chr2:10902941-10903021 20 1.50e-04 TCCTCCCCTG TCCTCCTC TCCCCTCCCA chr22:45088162-45088242 44 1.50e-04 ctcccggggc tcctcctc ccagggctcc chr17:48226634-48226714 7 1.50e-04 TCGTCG TCCTCCTC CAGGGCACTG chr10:21805427-21805507 60 1.50e-04 ctcttcctcc tcctcctc ctctccctcc chr12:133209260-13320934 44 1.50e-04 CTGGCCCCCC TCCTCCTC ACGGGGGTGC chr15:80886897-80886977 7 1.50e-04 TCAAGC TCCTCCTC TTAGAGGAAG chr5:131760727-131760807 37 1.50e-04 CCCAGGACTC TCCTCCTC CCACCGCCAC chr17:74664245-74664325 60 1.50e-04 ctccctttcc tcctcctc ctgcaggtct chr17:17472130-17472210 22 1.50e-04 cttctcctcc tcctcctc ttcctcctcc chr18:48723283-48723363 1 1.50e-04 . tcctcctc tgcttcctcc chr15:41851319-41851399 73 1.93e-04 tcccgccgcc tcctcccc chr20:60985028-60985108 5 1.93e-04 CTCA TCCTCCCC CGAGGAGCAG chr17:61520542-61520622 63 1.93e-04 TCCTCCTGCA TCCTCCCC ACGCTTGTAC chr9:137099429-137099509 4 1.93e-04 cca tcctcccc acctgtcctc chr20:59290433-59290513 59 2.00e-04 ctcaggctag tgctcttt ggggtgtcag chr5:945186-945266 48 2.25e-04 ATATTCTCCA TGCTCTCT GTGCTCCACA chr9:135450506-135450586 19 2.25e-04 TCACTCTGGG TGCTCTCT GGAGTCCTCC chr20:31598958-31599038 17 2.25e-04 AGTGGAGTGT TCCTGCTT GCCAGGTGGG chr1:206654732-206654812 13 2.25e-04 CCCGCGTGCC TCCTGCTT CGCAGCAGCA chr21:46315957-46316037 45 2.47e-04 GTGTGAGTGA TCCTGCCT GCGGTGTGAC chr2:2635480-2635560 4 2.73e-04 TAG TGCTCCTA GTCCTTGGAT chr8:50064146-50064226 41 2.73e-04 gctcccatgg tgctccta tggGCCCACA chr5:1165091-1165171 15 3.20e-04 TGGGCCCTTT TTCTCCCT GCAGGACACC chr18:46468280-46468360 22 3.20e-04 CTGTTGGCAG TGCTCCCA CCCTGGTGCT chr8:124286000-124286080 64 3.20e-04 CAGTCTTCAC TCCTCTCA ACAATCCTA chr7:128809043-128809123 17 3.20e-04 CTCCAGGACC TTCTCCCT GAGTCGGCTG chr14:75895169-75895249 69 3.20e-04 TGCTCCCTCC TTCTCCCT CCCG chr21:33557677-33557757 61 3.20e-04 aggcctgtgg tgctccca tggggaggtc chr19:8650907-8650987 58 3.20e-04 GGGAGTACTC TCCTCTCA CCCTGAGCAA chr9:132164308-132164388 61 3.55e-04 CCTGCAGCcc tgctcctc aactcctccc chrX:25031317-25031397 70 3.55e-04 ctccagcagt tcctcttc ctc chr22:19722509-19722589 71 4.20e-04 CTTTCCTGGA TCCTCTCC AC chr14:24800630-24800710 30 4.20e-04 CCATCCTAGG TGCTCCCC AGGGTGCTCC chr3:53876856-53876936 52 4.20e-04 TCCCAACAGT TCCTCTCC CAGCTCCGGC chr9:73027883-73027963 50 4.72e-04 GCTGCCAGGA TCCTGTCT CTCCTCCGGG chr16:57703001-57703081 73 4.72e-04 TCCTCAGTGC TCCTGTCT chr3:39168819-39168899 19 4.72e-04 CTGAGAGCTT TCCTGTCT TCATCCTTAG chr1:178482562-178482642 2 4.72e-04 C TGCTGCCT CCCTCTGGGG chr16:81477141-81477221 48 4.72e-04 AGCACCTTCA TGCTGCCT GTTCTTGGGA chr15:27334414-27334494 56 4.72e-04 GAGGTGGACC TGCTGCCT GCAGTCCCCA chr4:918549-918629 10 5.14e-04 TCCCGGGGC TGCTCTCA GGATAGTGAG chr8:128751121-128751201 55 5.99e-04 TCGGATTCTC TGCTCTCC TCGACGGAGT chr5:172698465-172698545 1 5.99e-04 . TTCTCCTA CCCCCAACCT chr10:74027914-74027994 34 5.99e-04 ACCAGCCCAC TCCTGCTC AGAGGTCGGC chr15:25978514-25978594 24 6.52e-04 GAGGGAGGAT TCCTGCCC GAGGGAGCAC chr7:75619587-75619667 71 7.15e-04 CCGGGAGCAC TCCTCACT CT -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TCCTCCYY MEME-4 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr7:44289413-44289493 1.3e-05 8_[+4]_64 chr1:212641279-212641359 1.3e-05 56_[+4]_16 chr18:3452631-3452711 1.3e-05 17_[+4]_55 chr5:146108-146188 1.3e-05 23_[+4]_49 chr19:46916046-46916126 1.3e-05 37_[+4]_35 chr9:124991301-124991381 1.3e-05 7_[+4]_65 chr6:136682161-136682241 1.3e-05 51_[+4]_21 chr8:41721960-41722040 1.3e-05 64_[+4]_8 chr19:1394450-1394530 3.7e-05 39_[+4]_33 chr7:506193-506273 3.7e-05 56_[+4]_16 chr12:131531207-13153128 3.7e-05 1_[+4]_71 chr2:224702287-224702367 3.7e-05 56_[+4]_16 chr5:5271507-5271587 3.7e-05 18_[+4]_54 chr16:1426248-1426328 3.7e-05 54_[+4]_18 chr12:131530554-13153063 3.7e-05 8_[+4]_64 chr15:89938777-89938857 3.7e-05 30_[+4]_42 chr17:45889650-45889730 3.7e-05 27_[+4]_45 chr7:505993-506073 3.7e-05 26_[+4]_46 chr5:944532-944612 5.6e-05 59_[+4]_13 chr12:131574111-13157419 5.6e-05 71_[+4]_1 chr11:742703-742783 9.2e-05 [+4]_72 chr11:1947925-1948005 9.2e-05 65_[+4]_7 chr6:169687946-169688026 9.2e-05 57_[+4]_15 chr5:1473156-1473236 9.2e-05 2_[+4]_70 chr3:197252697-197252777 9.2e-05 19_[+4]_53 chr6:44244251-44244331 9.2e-05 67_[+4]_5 chr1:54628815-54628895 9.2e-05 34_[+4]_38 chr2:661210-661290 9.2e-05 70_[+4]_2 chr3:5095896-5095976 0.00013 24_[+4]_48 chr7:158897294-158897374 0.00013 47_[+4]_25 chr7:158178539-158178619 0.00013 26_[+4]_46 chr17:49017904-49017984 0.00013 43_[+4]_29 chr20:60933632-60933712 0.00013 61_[+4]_11 chr2:10902941-10903021 0.00015 19_[+4]_53 chr22:45088162-45088242 0.00015 43_[+4]_29 chr17:48226634-48226714 0.00015 6_[+4]_66 chr10:21805427-21805507 0.00015 59_[+4]_13 chr12:133209260-13320934 0.00015 43_[+4]_29 chr15:80886897-80886977 0.00015 6_[+4]_66 chr5:131760727-131760807 0.00015 36_[+4]_36 chr17:74664245-74664325 0.00015 59_[+4]_13 chr17:17472130-17472210 0.00015 21_[+4]_51 chr18:48723283-48723363 0.00015 [+4]_72 chr15:41851319-41851399 0.00019 72_[+4] chr20:60985028-60985108 0.00019 4_[+4]_68 chr17:61520542-61520622 0.00019 62_[+4]_10 chr9:137099429-137099509 0.00019 3_[+4]_69 chr20:59290433-59290513 0.0002 58_[+4]_14 chr5:945186-945266 0.00022 47_[+4]_25 chr9:135450506-135450586 0.00022 18_[+4]_54 chr20:31598958-31599038 0.00022 16_[+4]_56 chr1:206654732-206654812 0.00022 12_[+4]_60 chr21:46315957-46316037 0.00025 44_[+4]_28 chr2:2635480-2635560 0.00027 3_[+4]_69 chr8:50064146-50064226 0.00027 40_[+4]_32 chr5:1165091-1165171 0.00032 14_[+4]_58 chr18:46468280-46468360 0.00032 21_[+4]_51 chr8:124286000-124286080 0.00032 63_[+4]_9 chr7:128809043-128809123 0.00032 16_[+4]_56 chr14:75895169-75895249 0.00032 68_[+4]_4 chr21:33557677-33557757 0.00032 60_[+4]_12 chr19:8650907-8650987 0.00032 57_[+4]_15 chr9:132164308-132164388 0.00036 60_[+4]_12 chrX:25031317-25031397 0.00036 69_[+4]_3 chr22:19722509-19722589 0.00042 70_[+4]_2 chr14:24800630-24800710 0.00042 29_[+4]_43 chr3:53876856-53876936 0.00042 51_[+4]_21 chr9:73027883-73027963 0.00047 49_[+4]_23 chr16:57703001-57703081 0.00047 72_[+4] chr3:39168819-39168899 0.00047 18_[+4]_54 chr1:178482562-178482642 0.00047 1_[+4]_71 chr16:81477141-81477221 0.00047 47_[+4]_25 chr15:27334414-27334494 0.00047 55_[+4]_17 chr4:918549-918629 0.00051 9_[+4]_63 chr8:128751121-128751201 0.0006 54_[+4]_18 chr5:172698465-172698545 0.0006 [+4]_72 chr10:74027914-74027994 0.0006 33_[+4]_39 chr15:25978514-25978594 0.00065 23_[+4]_49 chr7:75619587-75619667 0.00071 70_[+4]_2 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TCCTCCYY MEME-4 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF TCCTCCYY width=8 seqs=79 chr7:44289413-44289493 ( 9) TCCTCCTT 1 chr1:212641279-212641359 ( 57) TCCTCCTT 1 chr18:3452631-3452711 ( 18) TCCTCCTT 1 chr5:146108-146188 ( 24) TCCTCCTT 1 chr19:46916046-46916126 ( 38) TCCTCCTT 1 chr9:124991301-124991381 ( 8) TCCTCCTT 1 chr6:136682161-136682241 ( 52) TCCTCCTT 1 chr8:41721960-41722040 ( 65) TCCTCCTT 1 chr19:1394450-1394530 ( 40) TCCTCCCT 1 chr7:506193-506273 ( 57) TCCTCCCT 1 chr12:131531207-13153128 ( 2) TCCTCCCT 1 chr2:224702287-224702367 ( 57) TCCTCCCT 1 chr5:5271507-5271587 ( 19) TCCTCCCT 1 chr16:1426248-1426328 ( 55) TCCTCCCT 1 chr12:131530554-13153063 ( 9) TCCTCCCT 1 chr15:89938777-89938857 ( 31) TCCTCCCT 1 chr17:45889650-45889730 ( 28) TCCTCCCT 1 chr7:505993-506073 ( 27) TCCTCCCT 1 chr5:944532-944612 ( 60) TGCTCCTT 1 chr12:131574111-13157419 ( 72) TGCTCCTT 1 chr11:742703-742783 ( 1) TGCTCCCT 1 chr11:1947925-1948005 ( 66) TCCTCTCT 1 chr6:169687946-169688026 ( 58) TGCTCCCT 1 chr5:1473156-1473236 ( 3) TCCTCTCT 1 chr3:197252697-197252777 ( 20) TGCTCCCT 1 chr6:44244251-44244331 ( 68) TGCTCCCT 1 chr1:54628815-54628895 ( 35) TGCTCCCT 1 chr2:661210-661290 ( 71) TGCTCCCT 1 chr3:5095896-5095976 ( 25) TCCTCCCA 1 chr7:158897294-158897374 ( 48) TCCTCCCA 1 chr7:158178539-158178619 ( 27) TCCTCCCA 1 chr17:49017904-49017984 ( 44) TCCTCCCA 1 chr20:60933632-60933712 ( 62) TCCTCCCA 1 chr2:10902941-10903021 ( 20) TCCTCCTC 1 chr22:45088162-45088242 ( 44) TCCTCCTC 1 chr17:48226634-48226714 ( 7) TCCTCCTC 1 chr10:21805427-21805507 ( 60) TCCTCCTC 1 chr12:133209260-13320934 ( 44) TCCTCCTC 1 chr15:80886897-80886977 ( 7) TCCTCCTC 1 chr5:131760727-131760807 ( 37) TCCTCCTC 1 chr17:74664245-74664325 ( 60) TCCTCCTC 1 chr17:17472130-17472210 ( 22) TCCTCCTC 1 chr18:48723283-48723363 ( 1) TCCTCCTC 1 chr15:41851319-41851399 ( 73) TCCTCCCC 1 chr20:60985028-60985108 ( 5) TCCTCCCC 1 chr17:61520542-61520622 ( 63) TCCTCCCC 1 chr9:137099429-137099509 ( 4) TCCTCCCC 1 chr20:59290433-59290513 ( 59) TGCTCTTT 1 chr5:945186-945266 ( 48) TGCTCTCT 1 chr9:135450506-135450586 ( 19) TGCTCTCT 1 chr20:31598958-31599038 ( 17) TCCTGCTT 1 chr1:206654732-206654812 ( 13) TCCTGCTT 1 chr21:46315957-46316037 ( 45) TCCTGCCT 1 chr2:2635480-2635560 ( 4) TGCTCCTA 1 chr8:50064146-50064226 ( 41) TGCTCCTA 1 chr5:1165091-1165171 ( 15) TTCTCCCT 1 chr18:46468280-46468360 ( 22) TGCTCCCA 1 chr8:124286000-124286080 ( 64) TCCTCTCA 1 chr7:128809043-128809123 ( 17) TTCTCCCT 1 chr14:75895169-75895249 ( 69) TTCTCCCT 1 chr21:33557677-33557757 ( 61) TGCTCCCA 1 chr19:8650907-8650987 ( 58) TCCTCTCA 1 chr9:132164308-132164388 ( 61) TGCTCCTC 1 chrX:25031317-25031397 ( 70) TCCTCTTC 1 chr22:19722509-19722589 ( 71) TCCTCTCC 1 chr14:24800630-24800710 ( 30) TGCTCCCC 1 chr3:53876856-53876936 ( 52) TCCTCTCC 1 chr9:73027883-73027963 ( 50) TCCTGTCT 1 chr16:57703001-57703081 ( 73) TCCTGTCT 1 chr3:39168819-39168899 ( 19) TCCTGTCT 1 chr1:178482562-178482642 ( 2) TGCTGCCT 1 chr16:81477141-81477221 ( 48) TGCTGCCT 1 chr15:27334414-27334494 ( 56) TGCTGCCT 1 chr4:918549-918629 ( 10) TGCTCTCA 1 chr8:128751121-128751201 ( 55) TGCTCTCC 1 chr5:172698465-172698545 ( 1) TTCTCCTA 1 chr10:74027914-74027994 ( 34) TCCTGCTC 1 chr15:25978514-25978594 ( 24) TCCTGCCC 1 chr7:75619587-75619667 ( 71) TCCTCACT 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TCCTCCYY MEME-4 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 18250 bayes= 9.68137 E= 9.5e-024 -1295 -1295 -1295 245 -1295 102 -18 -185 -1295 160 -1295 -1295 -1295 -1295 -1295 245 -1295 138 -118 -1295 -377 127 -1295 6 -1295 94 -1295 101 -7 -25 -1295 161 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TCCTCCYY MEME-4 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 79 E= 9.5e-024 0.000000 0.000000 0.000000 1.000000 0.000000 0.670886 0.278481 0.050633 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.860759 0.139241 0.000000 0.012658 0.797468 0.000000 0.189873 0.000000 0.632911 0.000000 0.367089 0.164557 0.278481 0.000000 0.556962 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TCCTCCYY MEME-4 regular expression -------------------------------------------------------------------------------- T[CG]CTCC[CT][TC] -------------------------------------------------------------------------------- Time 14.94 secs. ******************************************************************************** ******************************************************************************** MOTIF RGAGGAGG MEME-5 width = 8 sites = 46 llr = 355 E-value = 7.8e+000 ******************************************************************************** -------------------------------------------------------------------------------- Motif RGAGGAGG MEME-5 Description -------------------------------------------------------------------------------- Simplified A 41a1183: pos.-specific C :2:::::: probability G 58:9927a matrix T 1::::::: bits 2.5 * 2.3 * 2.0 * 1.8 * * * Relative 1.5 * * * Entropy 1.3 **** * (11.1 bits) 1.0 ****** 0.8 ******** 0.5 ******** 0.3 ******** 0.0 -------- Multilevel GGAGGAGG consensus A A sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif RGAGGAGG MEME-5 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr19:3647111-3647191 53 1.61e-05 AGGCACTCAC AGAGGAGG GATGGGAGGA chr6:32981525-32981605 45 1.61e-05 CTGGGGTGGC AGAGGAGG CAATGACTAG chr16:30671191-30671271 41 1.61e-05 aggaggagga agaggagg aggaggaCTT chr22:36970032-36970112 73 1.61e-05 gcacctaagg agaggagg chr16:88374258-88374338 26 1.61e-05 CCGGGAGCAC AGAGGAGG CAGGTGCGTG chr1:3187404-3187484 68 1.61e-05 AGGGCAGTAC AGAGGAGG ACAGT chr17:38670400-38670480 71 1.61e-05 cccacttgct agaggagg ca chr15:80886897-80886977 17 2.49e-05 TCCTCCTCTT AGAGGAAG CAGCTCCTTC chr17:39796029-39796109 62 2.49e-05 GAGGACCAGC AGAGGAAG GGCTATGGGA chr17:6366201-6366281 66 2.49e-05 GGACCCCCAG AGAGGAAG GACCACA chr21:46833918-46833998 44 5.41e-05 Tggaggagca ggaggagg tggaggagga chr10:121302213-12130229 45 5.41e-05 aggagggcaa ggaggagg agCGGGCTCA chr9:135061258-135061338 15 5.41e-05 gggaggagga ggaggagg gaaaggagga chr5:1472288-1472368 15 5.41e-05 GGTCAGAGCA GGAGGAGG CGAGGTGAGG chr15:77925212-77925292 60 5.41e-05 agccagggag ggaggagg gatcgaggga chr9:136356247-136356327 23 5.41e-05 aggaggaact ggaggagg acttggagga chr12:122241859-12224193 9 7.02e-05 gaggagga ggaggaag aggaggaggG chr12:133164489-13316456 71 8.71e-05 GAGCACTCTG TGAGGAGG GG chr6:32077073-32077153 36 8.71e-05 GCAGCGACAG TGAGGAGG GAGTCTGCAG chr10:63831928-63832008 41 8.71e-05 ggctgaaacc tgaggagg cggtgctccc chr3:14481204-14481284 68 9.63e-05 TGTGTGTGTG TGAGGAAG CTGGG chr5:139055617-139055697 17 1.27e-04 GCTGGAGCCT ACAGGAGG CATTGGGCCC chr16:141508-141588 4 1.27e-04 ACC ACAGGAGG CCTCTGAGAA chr6:168507116-168507196 33 1.70e-04 ACACGTGAAG GAAGGAGG GGCAGGAATG chr18:55574215-55574295 4 1.70e-04 gag gaaggagg cctggggagg chr11:114122417-11412249 69 1.70e-04 aggaggagca gaaggagg ggga chr14:75721752-75721832 17 1.70e-04 GGGAGGAGGG AGAAGAGG AAGGAGGAGC chr11:64616020-64616100 4 2.48e-04 GGT GCAGGAGG GCTCAGCTAC chr1:29214920-29215000 4 2.48e-04 TTG GCAGGAGG CTGGGTGGGG chr5:131760727-131760807 3 2.48e-04 GC AGAGGGGG TTAGGAGTGC chr6:134436304-134436384 47 2.48e-04 TCCGGTCCCA GAAGGAAG TGGCTCCTCC chr16:81477141-81477221 65 2.48e-04 TGTTCTTGGG AGAGGGGG GGTGAATA chr17:37871769-37871849 35 2.48e-04 GCACTGAGAA AGAGGGGG CCTGATGGGG chr7:155138524-155138604 57 2.48e-04 GCACCCCCCT AGAGAAAG CACCCCCATA chr16:89456413-89456493 37 2.48e-04 GGGAGCACCG AGAGAAAG AAGATCACTG chr17:79703025-79703105 40 2.81e-04 GGAACTTCGG AGAGGGAG CCCGGCCCCC chr12:111866864-11186694 15 2.81e-04 aggaggGACG GCAGGAAG CCgcctcggg chr4:40267374-40267454 30 3.13e-04 GAGGGTGAAG GGAAGAGG CGGAGGCAGA chr16:455949-456029 65 3.13e-04 AGCCCCACAG GGAGAAGG GGGTGGAG chr17:61520542-61520622 10 3.93e-04 GTAGCCCCA GGAAGAAG GGGCTTCCCA chr10:104504487-10450456 5 4.45e-04 CCCC TCAGGAGG AGGAGCACAC chr17:64370159-64370239 69 4.45e-04 GATGGGCCAG GGAGGGAG GGCT chr7:44347023-44347103 49 4.45e-04 GAGGAGGGTT TCAGGAGG CTCAGCCTGG chr10:134699268-13469934 20 4.45e-04 CTCAGGCGGT GGAGGGAG CACTCACAGG chr1:168401317-168401397 39 4.45e-04 gcctgtggtg ggagggag gctgcagagt chr17:80825797-80825877 46 4.45e-04 GTGCTTTGCG GGAGGGAG TCATGGCCGA -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif RGAGGAGG MEME-5 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr19:3647111-3647191 1.6e-05 52_[+5]_20 chr6:32981525-32981605 1.6e-05 44_[+5]_28 chr16:30671191-30671271 1.6e-05 40_[+5]_32 chr22:36970032-36970112 1.6e-05 72_[+5] chr16:88374258-88374338 1.6e-05 25_[+5]_47 chr1:3187404-3187484 1.6e-05 67_[+5]_5 chr17:38670400-38670480 1.6e-05 70_[+5]_2 chr15:80886897-80886977 2.5e-05 16_[+5]_56 chr17:39796029-39796109 2.5e-05 61_[+5]_11 chr17:6366201-6366281 2.5e-05 65_[+5]_7 chr21:46833918-46833998 5.4e-05 43_[+5]_29 chr10:121302213-12130229 5.4e-05 44_[+5]_28 chr9:135061258-135061338 5.4e-05 14_[+5]_58 chr5:1472288-1472368 5.4e-05 14_[+5]_58 chr15:77925212-77925292 5.4e-05 59_[+5]_13 chr9:136356247-136356327 5.4e-05 22_[+5]_50 chr12:122241859-12224193 7e-05 8_[+5]_64 chr12:133164489-13316456 8.7e-05 70_[+5]_2 chr6:32077073-32077153 8.7e-05 35_[+5]_37 chr10:63831928-63832008 8.7e-05 40_[+5]_32 chr3:14481204-14481284 9.6e-05 67_[+5]_5 chr5:139055617-139055697 0.00013 16_[+5]_56 chr16:141508-141588 0.00013 3_[+5]_69 chr6:168507116-168507196 0.00017 32_[+5]_40 chr18:55574215-55574295 0.00017 3_[+5]_69 chr11:114122417-11412249 0.00017 68_[+5]_4 chr14:75721752-75721832 0.00017 16_[+5]_56 chr11:64616020-64616100 0.00025 3_[+5]_69 chr1:29214920-29215000 0.00025 3_[+5]_69 chr5:131760727-131760807 0.00025 2_[+5]_70 chr6:134436304-134436384 0.00025 46_[+5]_26 chr16:81477141-81477221 0.00025 64_[+5]_8 chr17:37871769-37871849 0.00025 34_[+5]_38 chr7:155138524-155138604 0.00025 56_[+5]_16 chr16:89456413-89456493 0.00025 36_[+5]_36 chr17:79703025-79703105 0.00028 39_[+5]_33 chr12:111866864-11186694 0.00028 14_[+5]_58 chr4:40267374-40267454 0.00031 29_[+5]_43 chr16:455949-456029 0.00031 64_[+5]_8 chr17:61520542-61520622 0.00039 9_[+5]_63 chr10:104504487-10450456 0.00045 4_[+5]_68 chr17:64370159-64370239 0.00045 68_[+5]_4 chr7:44347023-44347103 0.00045 48_[+5]_24 chr10:134699268-13469934 0.00045 19_[+5]_53 chr1:168401317-168401397 0.00045 38_[+5]_34 chr17:80825797-80825877 0.00045 45_[+5]_27 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif RGAGGAGG MEME-5 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF RGAGGAGG width=8 seqs=46 chr19:3647111-3647191 ( 53) AGAGGAGG 1 chr6:32981525-32981605 ( 45) AGAGGAGG 1 chr16:30671191-30671271 ( 41) AGAGGAGG 1 chr22:36970032-36970112 ( 73) AGAGGAGG 1 chr16:88374258-88374338 ( 26) AGAGGAGG 1 chr1:3187404-3187484 ( 68) AGAGGAGG 1 chr17:38670400-38670480 ( 71) AGAGGAGG 1 chr15:80886897-80886977 ( 17) AGAGGAAG 1 chr17:39796029-39796109 ( 62) AGAGGAAG 1 chr17:6366201-6366281 ( 66) AGAGGAAG 1 chr21:46833918-46833998 ( 44) GGAGGAGG 1 chr10:121302213-12130229 ( 45) GGAGGAGG 1 chr9:135061258-135061338 ( 15) GGAGGAGG 1 chr5:1472288-1472368 ( 15) GGAGGAGG 1 chr15:77925212-77925292 ( 60) GGAGGAGG 1 chr9:136356247-136356327 ( 23) GGAGGAGG 1 chr12:122241859-12224193 ( 9) GGAGGAAG 1 chr12:133164489-13316456 ( 71) TGAGGAGG 1 chr6:32077073-32077153 ( 36) TGAGGAGG 1 chr10:63831928-63832008 ( 41) TGAGGAGG 1 chr3:14481204-14481284 ( 68) TGAGGAAG 1 chr5:139055617-139055697 ( 17) ACAGGAGG 1 chr16:141508-141588 ( 4) ACAGGAGG 1 chr6:168507116-168507196 ( 33) GAAGGAGG 1 chr18:55574215-55574295 ( 4) GAAGGAGG 1 chr11:114122417-11412249 ( 69) GAAGGAGG 1 chr14:75721752-75721832 ( 17) AGAAGAGG 1 chr11:64616020-64616100 ( 4) GCAGGAGG 1 chr1:29214920-29215000 ( 4) GCAGGAGG 1 chr5:131760727-131760807 ( 3) AGAGGGGG 1 chr6:134436304-134436384 ( 47) GAAGGAAG 1 chr16:81477141-81477221 ( 65) AGAGGGGG 1 chr17:37871769-37871849 ( 35) AGAGGGGG 1 chr7:155138524-155138604 ( 57) AGAGAAAG 1 chr16:89456413-89456493 ( 37) AGAGAAAG 1 chr17:79703025-79703105 ( 40) AGAGGGAG 1 chr12:111866864-11186694 ( 15) GCAGGAAG 1 chr4:40267374-40267454 ( 30) GGAAGAGG 1 chr16:455949-456029 ( 65) GGAGAAGG 1 chr17:61520542-61520622 ( 10) GGAAGAAG 1 chr10:104504487-10450456 ( 5) TCAGGAGG 1 chr17:64370159-64370239 ( 69) GGAGGGAG 1 chr7:44347023-44347103 ( 49) TCAGGAGG 1 chr10:134699268-13469934 ( 20) GGAGGGAG 1 chr1:168401317-168401397 ( 39) GGAGGGAG 1 chr17:80825797-80825877 ( 46) GGAGGGAG 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif RGAGGAGG MEME-5 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 18250 bayes= 9.69444 E= 7.8e+000 126 -1217 54 -48 -99 -112 127 -1217 253 -1217 -1217 -1217 -141 -1217 157 -1217 -141 -1217 157 -1217 226 -1217 -86 -1217 92 -1217 110 -1217 -1217 -1217 167 -1217 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif RGAGGAGG MEME-5 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 46 E= 7.8e+000 0.413043 0.000000 0.456522 0.130435 0.086957 0.152174 0.760870 0.000000 1.000000 0.000000 0.000000 0.000000 0.065217 0.000000 0.934783 0.000000 0.065217 0.000000 0.934783 0.000000 0.826087 0.000000 0.173913 0.000000 0.326087 0.000000 0.673913 0.000000 0.000000 0.000000 1.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif RGAGGAGG MEME-5 regular expression -------------------------------------------------------------------------------- [GA]GAGGA[GA]G -------------------------------------------------------------------------------- Time 18.03 secs. ******************************************************************************** ******************************************************************************** SUMMARY OF MOTIFS ******************************************************************************** -------------------------------------------------------------------------------- Combined block diagrams: non-overlapping sites with p-value < 0.0001 -------------------------------------------------------------------------------- SEQUENCE NAME COMBINED P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr14:70014935-70015015 1.17e-02 64_[+2(7.98e-05)]_8 chr18:48723283-48723363 4.59e-02 80 chr7:1115919-1115999 3.06e-03 25_[+3(4.17e-05)]_5_[+3(2.49e-05)]_\ 10_[+3(4.17e-05)]_16 chr1:154724933-154725013 7.96e-03 80 chr16:141508-141588 3.41e-07 21_[+1(6.27e-05)]_7_[+4(3.66e-05)]_\ 36 chr22:50084278-50084358 3.28e-04 18_[+1(6.27e-05)]_12_[+5(5.41e-05)]_\ 34 chr3:53876856-53876936 3.67e-06 18_[+1(6.27e-05)]_11_[+2(7.98e-05)]_\ 35 chr10:63831928-63832008 5.99e-06 40_[+5(8.71e-05)]_2_[+2(7.98e-05)]_\ 22 chrX:102884937-102885017 2.87e-05 9_[+3(4.17e-05)]_7_[+3(4.17e-05)]_7_\ [+3(1.61e-05)]_33 chr16:89456413-89456493 1.77e-03 26_[+1(6.27e-05)]_46 chrX:128770218-128770298 6.05e-05 13_[+1(3.06e-05)]_10_[+3(5.09e-05)]_\ 16_[+3(1.61e-05)]_17 chr8:21996056-21996136 1.82e-06 42_[+1(6.27e-05)]_15_[+4(3.66e-05)]_\ 7 chr15:27334414-27334494 4.30e-04 36_[+1(9.20e-05)]_36 chr9:136356247-136356327 1.46e-04 [+3(1.61e-05)]_3_[+3(1.61e-05)]_4_\ [+3(1.61e-05)]_4_[+3(1.61e-05)]_6_[+3(1.61e-05)]_23 chr10:121066225-12106630 4.69e-03 58_[+1(6.27e-05)]_14 chr7:139142059-139142139 1.01e-02 3_[+1(6.27e-05)]_69 chr7:675825-675905 3.15e-01 80 chr19:52192309-52192389 4.31e-05 9_[+3(8.02e-05)]_12_[+3(1.61e-05)]_\ 43 chr12:131574111-13157419 9.87e-03 35_[+2(7.98e-05)]_10_[+2(7.98e-05)]_\ 10_[+4(5.62e-05)]_1 chr19:8650907-8650987 1.25e-03 80 chr7:151505986-151506066 5.59e-05 43_[+1(6.27e-05)]_29 chr17:75318911-75318991 2.95e-06 34_[+3(1.61e-05)]_6_[+1(3.06e-05)]_\ 24 chr4:90758231-90758311 9.26e-01 80 chr7:505993-506073 9.20e-04 26_[+4(3.66e-05)]_5_[+4(3.66e-05)]_\ 5_[+4(3.66e-05)]_5_[+4(3.66e-05)]_7 chr19:16178189-16178269 1.22e-04 6_[+1(6.27e-05)]_66 chr21:33557677-33557757 1.82e-04 36_[+2(7.98e-05)]_15_[+2(7.98e-05)]_\ 13 chr11:94373130-94373210 1.83e-05 3_[+2(7.98e-05)]_69 chr15:77925212-77925292 3.21e-04 33_[+1(6.27e-05)]_18_[+5(5.41e-05)]_\ 13 chr12:122241859-12224193 8.63e-06 [+3(1.61e-05)]_7_[+3(1.61e-05)]_57 chrX:25031317-25031397 5.26e-03 80 chr8:41721960-41722040 1.98e-03 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chr16:81477141-81477221 5.16e-05 34_[+1(6.27e-05)]_38 chr19:3647311-3647391 3.27e-05 2_[+5(5.41e-05)]_70 chr17:49017904-49017984 8.77e-03 31_[+4(3.66e-05)]_3_[+2(4.08e-05)]_\ 30 chr1:168401317-168401397 2.95e-03 10_[+1(9.20e-05)]_62 chr20:36568350-36568430 2.71e-04 9_[+5(5.41e-05)]_63 chr10:134699268-13469934 2.13e-03 2_[+1(6.27e-05)]_12_[+1(6.27e-05)]_\ 14_[+1(6.27e-05)]_28 chr1:9896072-9896152 1.90e-04 80 chr17:74664245-74664325 1.67e-02 29_[+4(3.66e-05)]_43 chr7:44347023-44347103 2.54e-05 5_[+5(5.41e-05)]_24_[+5(1.61e-05)]_\ 35 chr20:43329914-43329994 3.33e-03 51_[+4(3.66e-05)]_21 chr17:39796029-39796109 3.32e-05 33_[+3(1.61e-05)]_8_[+1(3.06e-05)]_\ 4_[+5(2.49e-05)]_11 chr5:149918857-149918937 8.68e-03 80 chr14:75721752-75721832 8.39e-05 7_[+5(5.41e-05)]_9_[+3(2.49e-05)]_\ 48 chr15:89938777-89938857 9.47e-04 8_[+2(4.08e-05)]_14_[+4(3.66e-05)]_\ 42 chr9:129466487-129466567 2.33e-04 30_[+1(6.27e-05)]_3_[+1(6.27e-05)]_\ 31 chr20:61155212-61155292 4.68e-04 31_[+1(3.06e-05)]_10_[+1(3.06e-05)]_\ 23 chr21:46808956-46809036 9.83e-02 80 chr2:661210-661290 2.48e-02 45_[+2(7.98e-05)]_17_[+4(9.17e-05)]_\ 2 chr10:6621234-6621314 2.54e-02 2_[+2(7.98e-05)]_70 chr1:54628815-54628895 2.11e-06 33_[+2(7.98e-05)]_39 chr2:10916081-10916161 7.85e-06 10_[+3(8.02e-05)]_26_[+2(7.98e-05)]_\ 28 chr3:14419942-14420022 4.24e-02 80 chr1:178482562-178482642 7.90e-05 21_[+3(4.17e-05)]_7_[+1(6.27e-05)]_\ 36 chr11:114122417-11412249 1.15e-05 48_[+3(1.61e-05)]_1_[+3(1.61e-05)]_\ 15 chr17:64370159-64370239 3.38e-06 12_[+2(7.98e-05)]_18_[+1(9.20e-05)]_\ 34 chr6:134436304-134436384 1.22e-05 65_[+1(3.06e-05)]_7 chr12:131530554-13153063 2.94e-03 8_[+4(3.66e-05)]_8_[+4(3.66e-05)]_\ 40_[+2(4.08e-05)] chr9:137099429-137099509 2.76e-02 15_[+2(4.08e-05)]_5_[+2(4.08e-05)]_\ 18_[+2(4.08e-05)]_18 chr19:46916046-46916126 2.99e-03 [+2(4.08e-05)]_29_[+4(1.30e-05)]_35 chr7:158178539-158178619 3.41e-04 61_[+4(3.66e-05)]_11 chr16:85616111-85616191 9.72e-07 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chr9:140427522-140427602 9.33e-05 36_[+1(6.27e-05)]_36 chr16:30671191-30671271 5.44e-05 17_[+3(1.61e-05)]_4_[+3(1.61e-05)]_\ 4_[+3(1.61e-05)]_31 chr12:133209260-13320934 4.46e-04 57_[+2(7.98e-05)]_15 chr20:60970912-60970992 2.65e-01 80 chr16:1426248-1426328 1.11e-02 8_[+4(3.66e-05)]_38_[+4(3.66e-05)]_\ 18 chr14:75746158-75746238 4.72e-05 38_[+5(5.41e-05)]_6_[+5(5.41e-05)]_\ 20 chr2:131135176-131135256 1.28e-02 29_[+4(3.66e-05)]_43 chr1:29214920-29215000 2.85e-04 33_[+5(5.41e-05)]_23_[+5(5.41e-05)]_\ 8 chr17:47533130-47533210 4.84e-05 28_[+5(5.41e-05)]_44 chr10:105455619-10545569 9.10e-03 80 chr17:80268245-80268325 1.20e-04 19_[+5(8.71e-05)]_1_[+3(1.61e-05)]_\ 44 chr10:121302213-12130229 2.24e-04 3_[+3(1.61e-05)]_[+5(5.41e-05)]_2_\ [+3(1.61e-05)]_1_[+3(1.61e-05)]_7_[+3(1.61e-05)]_27 chr3:39168819-39168899 5.52e-03 36_[+4(3.66e-05)]_36 chr16:57703001-57703081 4.72e-05 40_[+2(7.98e-05)]_6_[+2(7.98e-05)]_\ 18 chr17:61520542-61520622 2.15e-04 31_[+2(7.98e-05)]_41 chr20:59290433-59290513 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chr8:141517487-141517567 1.44e-01 80 chr18:3452631-3452711 7.98e-03 17_[+4(1.30e-05)]_55 chr2:224702287-224702367 7.40e-03 56_[+4(3.66e-05)]_16 chr2:2635480-2635560 1.93e-02 31_[+2(7.98e-05)]_21_[+2(7.98e-05)]_\ 12 chr12:131531207-13153128 7.10e-03 1_[+4(3.66e-05)]_26_[+4(3.66e-05)]_\ 5_[+2(7.98e-05)]_24 chr6:16761589-16761669 1.43e-01 80 chr21:46833918-46833998 3.56e-07 35_[+3(4.17e-05)]_[+5(5.41e-05)]_2_\ [+3(1.61e-05)]_7_[+3(1.61e-05)]_4 chr7:157232061-157232141 5.39e-03 80 chr1:117338218-117338298 3.37e-03 49_[+1(6.27e-05)]_8_[+1(6.27e-05)]_\ 7 chr4:6679067-6679147 2.22e-03 1_[+1(9.20e-05)]_71 chr1:212641279-212641359 7.03e-05 16_[+2(7.98e-05)]_32_[+4(1.30e-05)]_\ 16 chr10:76823353-76823433 1.06e-03 63_[+4(3.66e-05)]_9 chr11:113420641-11342072 1.32e-06 16_[+5(7.02e-05)]_56 chr1:151119469-151119549 1.43e-03 64_[+4(3.66e-05)]_8 chr9:80646904-80646984 4.45e-05 [+3(1.61e-05)]_25_[+5(5.41e-05)]_39 chr12:108991781-10899186 1.70e-01 80 chr4:918549-918629 1.72e-02 80 chr1:181318791-181318871 1.08e-03 22_[+1(3.06e-05)]_13_[+1(3.06e-05)]_\ 13_[+1(3.06e-05)]_8 chr5:172698465-172698545 4.08e-05 35_[+1(6.27e-05)]_5_[+1(3.06e-05)]_\ 24 chr14:96152506-96152586 9.05e-02 80 chr9:136395127-136395207 1.19e-03 63_[+1(6.27e-05)]_9 chr7:44289413-44289493 7.80e-03 8_[+4(1.30e-05)]_64 chr7:128809043-128809123 3.75e-05 36_[+1(3.06e-05)]_36 chr10:104504487-10450456 1.85e-05 8_[+3(1.61e-05)]_64 chr17:75731418-75731498 3.57e-04 69_[+3(2.49e-05)]_3 chr19:859729-859809 3.20e-06 16_[+5(8.71e-05)]_40_[+2(7.98e-05)]_\ 8 chr9:73027883-73027963 4.30e-05 14_[+5(5.41e-05)]_58 chr8:124286000-124286080 1.53e-02 17_[+2(7.98e-05)]_55 chr22:45088162-45088242 2.76e-02 80 chr5:945186-945266 3.09e-02 29_[+4(5.62e-05)]_43 chr8:128751121-128751201 2.62e-02 70_[+2(4.08e-05)]_2 chr11:326787-326867 8.63e-07 52_[+1(6.27e-05)]_7_[+5(1.61e-05)]_\ 5 chr6:34430394-34430474 2.51e-03 56_[+4(3.66e-05)]_16 chr18:46468280-46468360 1.16e-02 20_[+2(7.98e-05)]_6_[+2(7.98e-05)]_\ 38 chr13:114238860-11423894 1.30e-05 34_[+1(9.20e-05)]_9_[+3(4.17e-05)]_\ 6_[+3(1.61e-05)]_7 chr5:1473156-1473236 1.69e-02 2_[+4(9.17e-05)]_26_[+2(4.08e-05)]_\ 36 chr22:30807877-30807957 3.93e-02 80 chr5:1165091-1165171 2.60e-05 45_[+5(5.41e-05)]_27 chr12:33591436-33591516 2.29e-01 80 chr5:150027700-150027780 2.00e-02 11_[+2(7.98e-05)]_61 chr7:506193-506273 2.33e-02 33_[+4(3.66e-05)]_15_[+4(3.66e-05)]_\ 16 chr3:14481204-14481284 7.11e-05 10_[+3(1.61e-05)]_49_[+5(9.63e-05)]_\ 5 chr14:24800630-24800710 3.35e-03 28_[+2(7.98e-05)]_4_[+2(7.98e-05)]_\ 4_[+2(4.08e-05)]_20 chr17:79703025-79703105 1.58e-03 80 chr6:169687946-169688026 1.31e-03 27_[+2(7.98e-05)]_21_[+2(7.98e-05)]_\ 16 chr19:47124909-47124989 1.85e-03 42_[+3(5.09e-05)]_30 chr20:43940310-43940390 9.47e-04 29_[+1(3.06e-05)]_43 chr16:759170-759250 8.97e-02 80 chr6:168507116-168507196 9.86e-06 16_[+1(3.06e-05)]_32_[+5(5.41e-05)]_\ 16 chr9:132164308-132164388 4.02e-02 80 chr20:60985028-60985108 1.87e-05 13_[+3(4.17e-05)]_11_[+2(7.98e-05)]_\ 40 chr11:64616020-64616100 6.52e-03 80 chr3:194828446-194828526 8.30e-03 24_[+4(3.66e-05)]_48 chr21:46347937-46348017 4.05e-05 30_[+1(6.27e-05)]_3_[+4(3.66e-05)]_\ 31 chr17:29879725-29879805 6.39e-04 12_[+4(3.66e-05)]_60 chr8:144302599-144302679 1.04e-04 9_[+5(5.41e-05)]_63 chr18:77676168-77676248 1.77e-01 26_[+2(7.98e-05)]_46 chr17:27072176-27072256 1.39e-02 41_[+2(7.98e-05)]_31 chr5:139055617-139055697 5.81e-02 80 chr16:455949-456029 2.39e-05 20_[+1(6.27e-05)]_52 chr15:41851319-41851399 2.18e-02 44_[+4(3.66e-05)]_28 chr12:57568630-57568710 3.07e-05 23_[+3(4.17e-05)]_49 chr4:40267374-40267454 2.28e-02 80 chr3:5095896-5095976 9.16e-05 48_[+1(6.27e-05)]_24 chr22:19722509-19722589 1.81e-02 49_[+2(4.08e-05)]_23 chr11:1947925-1948005 4.15e-04 53_[+4(3.66e-05)]_4_[+4(9.17e-05)]_\ 7 chr19:1394450-1394530 6.47e-03 15_[+2(7.98e-05)]_16_[+4(3.66e-05)]_\ 15_[+4(3.66e-05)]_10 chr11:742703-742783 2.69e-02 [+4(9.17e-05)]_72 chr7:5495102-5495182 5.11e-04 57_[+4(3.66e-05)]_15 chr19:47582727-47582807 3.09e-04 50_[+2(4.08e-05)]_22 chr1:1237732-1237812 2.87e-03 19_[+1(6.27e-05)]_12_[+1(6.27e-05)]_\ 33 chr19:51315012-51315092 2.06e-03 55_[+1(3.06e-05)]_17 chr1:202135188-202135268 3.26e-01 80 chr22:39473588-39473668 1.20e-01 61_[+2(7.98e-05)]_11 chr19:3647111-3647191 4.58e-04 18_[+5(1.61e-05)]_4_[+5(5.41e-05)]_\ 14_[+5(1.61e-05)]_4_[+5(5.41e-05)]_8 chr12:48133889-48133969 1.71e-01 80 chr22:19720242-19720322 1.12e-04 38_[+2(7.98e-05)]_34 chr9:71790177-71790257 2.05e-01 80 chr2:10902941-10903021 1.85e-02 8_[+2(4.08e-05)]_64 chr5:5308585-5308665 3.27e-05 35_[+3(2.49e-05)]_[+1(6.27e-05)]_7_\ [+1(6.27e-05)]_14 chr7:24612946-24613026 3.15e-01 80 -------------------------------------------------------------------------------- ******************************************************************************** ******************************************************************************** Stopped because requested number of motifs (5) found. ******************************************************************************** CPU: c22n04.farnam.hpc.yale.internal ********************************************************************************