******************************************************************************** MEME - Motif discovery tool ******************************************************************************** MEME version 5.3.3 (Release date: Sun Feb 7 15:39:52 2021 -0800) For further information on how to interpret these results please access https://meme-suite.org/meme. To get a copy of the MEME Suite software please access https://meme-suite.org. ******************************************************************************** ******************************************************************************** REFERENCE ******************************************************************************** If you use this program in your research, please cite: Timothy L. Bailey and Charles Elkan, "Fitting a mixture model by expectation maximization to discover motifs in biopolymers", Proceedings of the Second International Conference on Intelligent Systems for Molecular Biology, pp. 28-36, AAAI Press, Menlo Park, California, 1994. ******************************************************************************** ******************************************************************************** TRAINING SET ******************************************************************************** PRIMARY SEQUENCES= ../result/final_prediction/K562/fasta/RankLinear0.6_40/ZMYM3.fasta CONTROL SEQUENCES= --none-- ALPHABET= ACGT Sequence name Weight Length Sequence name Weight Length ------------- ------ ------ ------------- ------ ------ chr2:178568041-178568121 1.0000 80 chr1:235119415-235119495 1.0000 80 chr9:126058600-126058680 1.0000 80 chr10:119523190-11952327 1.0000 80 chr1:206916886-206916966 1.0000 80 chr3:70340362-70340442 1.0000 80 chr10:21451961-21452041 1.0000 80 chr14:24613839-24613919 1.0000 80 chr7:50315173-50315253 1.0000 80 chr10:73486911-73486991 1.0000 80 chr12:11920136-11920216 1.0000 80 chr16:80007392-80007472 1.0000 80 chr16:27562019-27562099 1.0000 80 chr16:79963272-79963352 1.0000 80 chr1:234913697-234913777 1.0000 80 chr2:12213498-12213578 1.0000 80 chr21:39846894-39846974 1.0000 80 chr9:132253217-132253297 1.0000 80 chr1:168059332-168059412 1.0000 80 chr16:50775392-50775472 1.0000 80 chr1:154126690-154126770 1.0000 80 chr1:40366001-40366081 1.0000 80 chr1:120279416-120279496 1.0000 80 chr3:5094098-5094178 1.0000 80 chr7:25933750-25933830 1.0000 80 chr1:236665897-236665977 1.0000 80 chr2:16921216-16921296 1.0000 80 chr6:107275134-107275214 1.0000 80 chr13:42849829-42849909 1.0000 80 chr10:63236451-63236531 1.0000 80 chr19:44646089-44646169 1.0000 80 chr3:5262922-5263002 1.0000 80 chr22:21454042-21454122 1.0000 80 chr6:159072114-159072194 1.0000 80 chr1:24011041-24011121 1.0000 80 chr9:119210919-119210999 1.0000 80 chr2:201674738-201674818 1.0000 80 chr7:106860427-106860507 1.0000 80 chr6:15899125-15899205 1.0000 80 chr19:56859847-56859927 1.0000 80 chr21:36850094-36850174 1.0000 80 chrX:117473058-117473138 1.0000 80 chr19:50703098-50703178 1.0000 80 chr2:145043015-145043095 1.0000 80 chr16:23879006-23879086 1.0000 80 chr1:207126740-207126820 1.0000 80 chr7:137634780-137634860 1.0000 80 chr2:24703296-24703376 1.0000 80 chr1:31231140-31231220 1.0000 80 chr2:197041287-197041367 1.0000 80 chr16:79932745-79932825 1.0000 80 chr15:41100142-41100222 1.0000 80 chr5:154238596-154238676 1.0000 80 chr10:73007708-73007788 1.0000 80 chr16:85431724-85431804 1.0000 80 chr20:45317259-45317339 1.0000 80 chr1:234779624-234779704 1.0000 80 chr14:75765051-75765131 1.0000 80 chr3:72328044-72328124 1.0000 80 chr8:98792849-98792929 1.0000 80 chr1:211784236-211784316 1.0000 80 chr19:16186328-16186408 1.0000 80 chr19:17726804-17726884 1.0000 80 chr12:48168136-48168216 1.0000 80 chr12:114108707-11410878 1.0000 80 chr10:21447364-21447444 1.0000 80 chr12:224132-224212 1.0000 80 chr1:234728948-234729028 1.0000 80 chr19:42427278-42427358 1.0000 80 chr7:135688993-135689073 1.0000 80 chr3:14578483-14578563 1.0000 80 chr5:134771815-134771895 1.0000 80 chr5:148809517-148809597 1.0000 80 chr1:51899021-51899101 1.0000 80 chr10:113942913-11394299 1.0000 80 chr1:15398577-15398657 1.0000 80 chr10:49697305-49697385 1.0000 80 chr11:3211285-3211365 1.0000 80 chr15:64194663-64194743 1.0000 80 chr6:7135392-7135472 1.0000 80 chr16:22218788-22218868 1.0000 80 chr19:45076582-45076662 1.0000 80 chr5:125823431-125823511 1.0000 80 chr6:31739237-31739317 1.0000 80 chr4:13528445-13528525 1.0000 80 chr2:12176586-12176666 1.0000 80 chr1:26941282-26941362 1.0000 80 chr11:94681266-94681346 1.0000 80 chr6:3397699-3397779 1.0000 80 chr12:111845980-11184606 1.0000 80 chr7:103632010-103632090 1.0000 80 chr16:85382226-85382306 1.0000 80 chr20:37002350-37002430 1.0000 80 chr22:21099994-21100074 1.0000 80 chr9:132020494-132020574 1.0000 80 chr10:72981559-72981639 1.0000 80 chr11:33957778-33957858 1.0000 80 chr12:71002172-71002252 1.0000 80 chr2:33088535-33088615 1.0000 80 chr11:69212596-69212676 1.0000 80 chr10:79832488-79832568 1.0000 80 chr6:30168496-30168576 1.0000 80 chr22:19616071-19616151 1.0000 80 chr10:73397218-73397298 1.0000 80 chr11:73562281-73562361 1.0000 80 chr12:68872705-68872785 1.0000 80 chr3:5044741-5044821 1.0000 80 chr9:129621539-129621619 1.0000 80 chr19:7937879-7937959 1.0000 80 chr1:45082088-45082168 1.0000 80 chr8:128985642-128985722 1.0000 80 chr6:12014364-12014444 1.0000 80 chr1:156632083-156632163 1.0000 80 chr11:64699920-64700000 1.0000 80 chr6:138197864-138197944 1.0000 80 chr2:65632231-65632311 1.0000 80 chr1:53139340-53139420 1.0000 80 chr3:14400462-14400542 1.0000 80 chr22:25798480-25798560 1.0000 80 chr5:125874428-125874508 1.0000 80 chr18:23942151-23942231 1.0000 80 chr21:34494965-34495045 1.0000 80 chr19:35632958-35633038 1.0000 80 chr1:7008152-7008232 1.0000 80 chr10:80807489-80807569 1.0000 80 chr16:57640199-57640279 1.0000 80 chr1:12805777-12805857 1.0000 80 chr21:37947690-37947770 1.0000 80 chr17:73816344-73816424 1.0000 80 chr10:73514423-73514503 1.0000 80 chr1:11801702-11801782 1.0000 80 chr1:12261539-12261619 1.0000 80 chr12:109248910-10924899 1.0000 80 chr9:117158223-117158303 1.0000 80 chr8:130841007-130841087 1.0000 80 chr5:138053254-138053334 1.0000 80 chr1:31238521-31238601 1.0000 80 chr6:30724309-30724389 1.0000 80 chr16:87293218-87293298 1.0000 80 chr7:149481446-149481526 1.0000 80 chr10:63581969-63582049 1.0000 80 chr5:131809031-131809111 1.0000 80 chr19:45871529-45871609 1.0000 80 chrX:117669227-117669307 1.0000 80 chr19:17358126-17358206 1.0000 80 chr1:67658750-67658830 1.0000 80 chr1:204674032-204674112 1.0000 80 chr17:47668361-47668441 1.0000 80 chr12:7795678-7795758 1.0000 80 chr15:64203520-64203600 1.0000 80 chr20:56017011-56017091 1.0000 80 chr19:3761017-3761097 1.0000 80 chr10:22517264-22517344 1.0000 80 chr8:128924572-128924652 1.0000 80 chr1:39280979-39281059 1.0000 80 chr1:24235098-24235178 1.0000 80 chr2:220339208-220339288 1.0000 80 chr16:79946653-79946733 1.0000 80 chr6:39204663-39204743 1.0000 80 chr2:178258732-178258812 1.0000 80 chr20:44547525-44547605 1.0000 80 chr12:104644285-10464436 1.0000 80 chr6:47208164-47208244 1.0000 80 chr9:126596624-126596704 1.0000 80 chr10:71095491-71095571 1.0000 80 chr16:56486486-56486566 1.0000 80 chr1:156660159-156660239 1.0000 80 chr2:46818867-46818947 1.0000 80 chr1:211756488-211756568 1.0000 80 chr1:17329157-17329237 1.0000 80 chr6:43671413-43671493 1.0000 80 chr9:126204243-126204323 1.0000 80 chr3:14295592-14295672 1.0000 80 chr6:130071755-130071835 1.0000 80 chr11:34628470-34628550 1.0000 80 chr6:14694723-14694803 1.0000 80 chr1:12611753-12611833 1.0000 80 chr10:21455556-21455636 1.0000 80 chr2:68641740-68641820 1.0000 80 chr1:23900228-23900308 1.0000 80 chr10:63538040-63538120 1.0000 80 chr1:120315101-120315181 1.0000 80 chr2:85196957-85197037 1.0000 80 chr6:7993815-7993895 1.0000 80 chr10:63570162-63570242 1.0000 80 chr12:117038924-11703900 1.0000 80 chr6:158403789-158403869 1.0000 80 chr1:15775503-15775583 1.0000 80 chr3:4550861-4550941 1.0000 80 chr10:80864193-80864273 1.0000 80 chr9:117159651-117159731 1.0000 80 chr12:57945042-57945122 1.0000 80 chr6:43902538-43902618 1.0000 80 chr7:107541099-107541179 1.0000 80 chr10:73838843-73838923 1.0000 80 chr1:31228358-31228438 1.0000 80 chr1:54627626-54627706 1.0000 80 chr3:141086446-141086526 1.0000 80 chr10:72458989-72459069 1.0000 80 chr19:45799290-45799370 1.0000 80 chr8:37757596-37757676 1.0000 80 chr17:37832975-37833055 1.0000 80 chr6:21995690-21995770 1.0000 80 chr1:201521674-201521754 1.0000 80 chr6:35243799-35243879 1.0000 80 chr6:6738469-6738549 1.0000 80 chr1:156835808-156835888 1.0000 80 chr12:125480236-12548031 1.0000 80 chr1:53599577-53599657 1.0000 80 chr17:38704482-38704562 1.0000 80 chr4:81049350-81049430 1.0000 80 chr5:173123343-173123423 1.0000 80 chr20:37592603-37592683 1.0000 80 chr11:65254221-65254301 1.0000 80 chr19:17665906-17665986 1.0000 80 chr3:5078256-5078336 1.0000 80 chr18:32610822-32610902 1.0000 80 chr22:26829025-26829105 1.0000 80 chr7:75364560-75364640 1.0000 80 chr16:80032244-80032324 1.0000 80 chr1:53170188-53170268 1.0000 80 chr5:10278212-10278292 1.0000 80 chr19:3143106-3143186 1.0000 80 chr3:9792894-9792974 1.0000 80 chr14:24739833-24739913 1.0000 80 chrX:109164328-109164408 1.0000 80 chr12:57558392-57558472 1.0000 80 chr5:138855590-138855670 1.0000 80 chr12:116822103-11682218 1.0000 80 chr1:37905118-37905198 1.0000 80 chr12:31000334-31000414 1.0000 80 chr10:121028087-12102816 1.0000 80 chr5:115694978-115695058 1.0000 80 chr15:55611902-55611982 1.0000 80 chr15:85451095-85451175 1.0000 80 chr4:76603909-76603989 1.0000 80 chr1:180472792-180472872 1.0000 80 chr10:74071523-74071603 1.0000 80 chr6:6805271-6805351 1.0000 80 chr20:33755751-33755831 1.0000 80 chr6:16056838-16056918 1.0000 80 chr11:64519223-64519303 1.0000 80 chr9:123838076-123838156 1.0000 80 chr19:3362680-3362760 1.0000 80 chr19:1054438-1054518 1.0000 80 chr16:19151211-19151291 1.0000 80 chr19:923982-924062 1.0000 80 chr19:55679119-55679199 1.0000 80 chr12:104994335-10499441 1.0000 80 chr16:15601945-15602025 1.0000 80 ******************************************************************************** ******************************************************************************** COMMAND LINE SUMMARY ******************************************************************************** This information can also be useful in the event you wish to report a problem with the MEME software. command: meme -oc ../result/final_prediction/K562/inference_raw/MEME/RankLinear0.6_40_ZMYM3/ -dna -nmotifs 5 -w 8 -maxsize 250000 -nostatus ../result/final_prediction/K562/fasta/RankLinear0.6_40/ZMYM3.fasta model: mod= zoops nmotifs= 5 evt= inf objective function: em= E-value of product of p-values starts= E-value of product of p-values strands: + width: minw= 8 maxw= 8 nsites: minsites= 2 maxsites= 250 wnsites= 0.8 theta: spmap= uni spfuzz= 0.5 em: prior= dirichlet b= 0.01 maxiter= 50 distance= 1e-05 trim: wg= 11 ws= 1 endgaps= yes data: n= 20000 N= 250 sample: seed= 0 hsfrac= 0 searchsize= 20000 norand= no csites= 1000 Letter frequencies in dataset: A 0.288 C 0.214 G 0.217 T 0.281 Background letter frequencies (from file dataset with add-one prior applied): A 0.288 C 0.214 G 0.217 T 0.281 Background model order: 0 ******************************************************************************** ******************************************************************************** MOTIF AAAMTGRG MEME-1 width = 8 sites = 173 llr = 1370 E-value = 6.7e-183 ******************************************************************************** -------------------------------------------------------------------------------- Motif AAAMTGRG MEME-1 Description -------------------------------------------------------------------------------- Simplified A 88a5::5: pos.-specific C :::5:::: probability G 11:::a5a matrix T ::::a::: bits 2.2 * 2.0 * * 1.8 * * * 1.6 * ** * Relative 1.3 * ** * Entropy 1.1 * * **** (11.4 bits) 0.9 *** **** 0.7 ******** 0.4 ******** 0.2 ******** 0.0 -------- Multilevel AAAATGGG consensus C A sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AAAMTGRG MEME-1 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr16:19151211-19151291 45 3.44e-05 attcacctgc aaaatggg tagattatag chr19:3362680-3362760 45 3.44e-05 tctcatctgt aaaatggg accacatggg chr6:16056838-16056918 49 3.44e-05 gctcatctat aaaatggg gacacaaata chr10:74071523-74071603 28 3.44e-05 ccccatctgt aaaatggg actagtaata chr4:76603909-76603989 61 3.44e-05 tctcatctgt aaaatggg gacaataata chr15:55611902-55611982 60 3.44e-05 gctcgtctgt aaaatggg gctaataata chr10:121028087-12102816 36 3.44e-05 tttcatctgt aaaatggg tacgataata chr1:37905118-37905198 56 3.44e-05 ccttatctgt aaaatggg CTCTATTGag chrX:109164328-109164408 47 3.44e-05 aattatctat aaaatggg gataataata chr3:9792894-9792974 59 3.44e-05 tgccacctgt aaaatggg gattatatct chr1:53170188-53170268 33 3.44e-05 tctcatctgt aaaatggg actcccaatc chr16:80032244-80032324 59 3.44e-05 tctcttctat aaaatggg tataatatca chr3:5078256-5078336 46 3.44e-05 ccatgtctgt aaaatggg ctaacagtaa chr11:65254221-65254301 50 3.44e-05 cctcatctgt aaaatggg taggtgctgt chr4:81049350-81049430 51 3.44e-05 tcctatcttt aaaatggg aataatagta chr6:35243799-35243879 63 3.44e-05 cctcatctgt aaaatggg tataatatac chr1:201521674-201521754 45 3.44e-05 tctcgtctgt aaaatggg ggcaataata chr17:37832975-37833055 38 3.44e-05 tctcatctgc aaaatggg aataatcata chr1:54627626-54627706 68 3.44e-05 cctcatctgt aaaatggg aacaa chr10:80864193-80864273 48 3.44e-05 tgtcatctgc aaaatggg tacaatagac chr11:34628470-34628550 47 3.44e-05 cctcatctgt aaaatggg aatcatGGTG chr1:17329157-17329237 58 3.44e-05 tctcatctgc aaaatggg ggcagtgaca chr2:46818867-46818947 49 3.44e-05 cctcatctgt aaaatggg tataaaaaga chr12:104644285-10464436 72 3.44e-05 ccttgtttgt aaaatggg g chr20:44547525-44547605 47 3.44e-05 ccacatctgt aaaatggg atgatctagt chr1:39280979-39281059 46 3.44e-05 cttccactgt aaaatggg aataacagta chr20:56017011-56017091 55 3.44e-05 tgctatcctt aaaatggg tgtgatacaa chrX:117669227-117669307 68 3.44e-05 cctcatctgt aaaatggg cataa chr10:63581969-63582049 60 3.44e-05 cctcatctga aaaatggg gacaatgata chr1:11801702-11801782 62 3.44e-05 tctcagctgt aaaatggg gataataaga chr10:73514423-73514503 35 3.44e-05 gcccatcagt aaaatggg gacaatggta chr1:12805777-12805857 47 3.44e-05 cctcatctgt aaaatggg tataataatg chr18:23942151-23942231 43 3.44e-05 ccccacctgt aaaatggg catattgcct chr9:129621539-129621619 68 3.44e-05 ctcttggatt aaaatggg aatag chr3:5044741-5044821 35 3.44e-05 tctcatctct aaaatggg gcagttgtga chr6:30168496-30168576 54 3.44e-05 atccatctgt aaaatggg aagagtgata chr11:33957778-33957858 58 3.44e-05 cctcatctat aaaatggg catatttgcc chr16:85382226-85382306 55 3.44e-05 tcccatctat aaaatggg ttggtcattc chr6:3397699-3397779 48 3.44e-05 ccttaactgt aaaatggg gctatttgtg chr16:22218788-22218868 21 3.44e-05 tctcatcggt aaaatggg tacagtatta chr6:7135392-7135472 40 3.44e-05 TTCCATCTCT AAAATGGG TAGAATTATC chr1:15398577-15398657 61 3.44e-05 actcatctgt aaaatggg tgtaattacc chr10:113942913-11394299 39 3.44e-05 tcccatctgg aaaatggg cagaatgata chr5:134771815-134771895 38 3.44e-05 tcccatctgt aaaatggg catcatagga chr16:85431724-85431804 47 3.44e-05 cctcatctgc aaaatggg cgtgatggga chr15:41100142-41100222 70 3.44e-05 ccatttctgt aaaatggg gct chr19:50703098-50703178 32 3.44e-05 cctcatctgt aaaatggg tttgacatta chrX:117473058-117473138 51 3.44e-05 ccctacctgt aaaatggg tataatagta chr21:36850094-36850174 63 3.44e-05 tctcatctgt aaaatggg tctaactata chr2:201674738-201674818 46 3.44e-05 ttccatctgt aaaatggg actaataata chr9:119210919-119210999 52 3.44e-05 ccttatctgt aaaatggg gacaagagtt chr19:44646089-44646169 46 3.44e-05 gctgttcttt aaaatggg gacgttagga chr10:63236451-63236531 56 3.44e-05 tcaaatctgt aaaatggg gataacaata chr9:132253217-132253297 55 3.44e-05 tctcctctgt aaaatggg ctaacactga chr12:11920136-11920216 38 3.44e-05 ccttatctct aaaatggg tacagtcata chr7:50315173-50315253 55 3.44e-05 acccatctgc aaaatggg gataatgata chr19:923982-924062 36 5.39e-05 atagagggat aaactgag gcacagacag chr12:57558392-57558472 30 5.39e-05 acagatgaaa aaactgag gcccaaagtt chr14:24739833-24739913 46 5.39e-05 acagatgagc aaactgag gcccaaagag chr5:10278212-10278292 53 5.39e-05 acagatgcaa aaactgag gctcaggaag chr5:173123343-173123423 56 5.39e-05 ctgatgagga aaactgag gcccgcaact chr1:53599577-53599657 15 5.39e-05 acagatgagg aaactgag gcgtagagag chr12:125480236-12548031 43 5.39e-05 acagatgagg aaactgag acacagagca chr6:6738469-6738549 41 5.39e-05 tcagatgatg aaactgag gcacagaagt chr6:21995690-21995770 29 5.39e-05 tcagatgaga aaactgag gtttagcgag chr6:43902538-43902618 36 5.39e-05 acagatttgg aaactgag actggagaaa chr1:15775503-15775583 56 5.39e-05 acagatgaga aaactgag gccagacagg chr6:158403789-158403869 36 5.39e-05 gcagatgagc aaactgag gcctaaagag chr1:120315101-120315181 21 5.39e-05 acagatgagg aaactgag gttcaggaaa chr6:47208164-47208244 54 5.39e-05 acagatgagg aaactgag gctctaagag chr6:39204663-39204743 62 5.39e-05 acagatgagg aaactgag tttcagagag chr8:128924572-128924652 48 5.39e-05 acagatgagg aaactgag gctcagagga chr19:3761017-3761097 49 5.39e-05 acagatgaag aaactgag ccacagaatg chr5:131809031-131809111 61 5.39e-05 acagatgaag aaactgag gctacaaaag chr7:149481446-149481526 36 5.39e-05 gcagatgagg aaactgag gctcagatag chr22:25798480-25798560 33 5.39e-05 acagctgaga aaactgag gcacacaaag chr3:14400462-14400542 53 5.39e-05 cagatgagcc aaactgag gctcgggagc chr11:64699920-64700000 47 5.39e-05 acagatgaga aaactgag gctgggaggt chr1:45082088-45082168 53 5.39e-05 acagaggaag aaactgag gtgcagagga chr12:68872705-68872785 48 5.39e-05 acagatgagg aaactgag gATGGGGATT chr12:71002172-71002252 24 5.39e-05 acagataaga aaactgag gcaagaaagg chr11:94681266-94681346 17 5.39e-05 gcagatcagt aaactgag ggtgagggag chr1:26941282-26941362 51 5.39e-05 acagatgaca aaactgag gcttggagtg chr2:12176586-12176666 48 5.39e-05 acagatgaga aaactgag actcacagca chr4:13528445-13528525 37 5.39e-05 acagatgagc aaactgag gcccaatatc chr5:125823431-125823511 25 5.39e-05 acagatgaag aaactgag actcagagta chr15:64194663-64194743 43 5.39e-05 acagattaga aaactgag gcccagaaag chr1:51899021-51899101 48 5.39e-05 acagataaat aaactgag gtacagatag chr5:148809517-148809597 22 5.39e-05 cagatgagaa aaactgag gcttatttaa chr3:14578483-14578563 36 5.39e-05 acagctggga aaactgag gcatggagat chr19:42427278-42427358 33 5.39e-05 acagatgtgg aaactgag gttctgacag chr12:48168136-48168216 61 5.39e-05 acagataagg aaactgag gcctgaagtt chr19:17726804-17726884 47 5.39e-05 acagatgaga aaactgag gctcagggag chr8:98792849-98792929 46 5.39e-05 acagatgaga aaactgag gcttagagaa chr1:234779624-234779704 36 5.39e-05 acagatctgc aaactgag gcacaaagag chr1:31231140-31231220 45 5.39e-05 acagatgaag aaactgag gcacagagag chr1:24011041-24011121 54 5.39e-05 cagatgagga aaactgag gctgatagGA chr1:236665897-236665977 40 5.39e-05 agaggtggga aaactgag gcacagaaag chr7:25933750-25933830 37 5.39e-05 ccagctgagc aaactgag gctaaaggtt chr1:120279416-120279496 38 5.39e-05 acagataaag aaactgag gcttagatca chr21:39846894-39846974 45 5.39e-05 aagatgagga aaactgag actccaaaaa chr2:12213498-12213578 32 5.39e-05 acagataacg aaactgag gcagagaagt chr16:79963272-79963352 40 5.39e-05 acagattaaa aaactgag gcaatgagtg chr16:27562019-27562099 57 5.39e-05 acagatgatg aaactgag gctcagaggt chr14:24613839-24613919 34 5.39e-05 acagatgaaa aaactgag tcacagaatg chr1:206916886-206916966 17 5.39e-05 atagatttgt aaactgag gctcagcttg chr6:30724309-30724389 32 8.01e-05 acagatgaga aaaatgag gttcaatgag chr10:79832488-79832568 48 9.12e-05 ccaagtggca gaactggg atttggcccc chr16:15601945-15602025 45 1.06e-04 ccccatctat gaaatggg ataacagcac chr19:55679119-55679199 50 1.06e-04 gctgctctgt gaaatggg aatGTAGCGT chr11:64519223-64519303 45 1.06e-04 gcccatctgt gaaatggg gataattcca chr6:14694723-14694803 53 1.06e-04 tctcatctgt gaaatggg aggaaataga chr9:126204243-126204323 45 1.06e-04 cctcatctgt gaaatggg catatggtag chr17:73816344-73816424 47 1.06e-04 cctctgctgt gaaatggg tataacggca chr19:7937879-7937959 41 1.06e-04 TCCCATCTGT GAAATGGG CATGTGCCCT chr12:111845980-11184606 57 1.06e-04 cctcatctgt gaaatggg tgtgctaata chr14:75765051-75765131 58 1.06e-04 tcttatctgt gaaatggg aataattgtg chr2:197041287-197041367 51 1.06e-04 tctcatctgt gaaatggg gataataata chr6:15899125-15899205 33 1.06e-04 cttaacctgt gaaatggg gataatcata chr1:154126690-154126770 45 1.06e-04 cctcgtctgt gaaatggg agtaatagta chr3:70340362-70340442 71 1.06e-04 tctcatctgt gaaatggg aa chr16:56486486-56486566 62 1.66e-04 cttcatctgt agaatggg gagagtgata chr1:207126740-207126820 59 1.66e-04 tcccatctct agaatggg agtaTGTTTC chr6:159072114-159072194 52 1.66e-04 cctcatctgt agaatggg tacatttact chr13:42849829-42849909 49 1.66e-04 tcctatgcgt agaatggg cataatagca chr19:17665906-17665986 43 1.81e-04 atagatggac agactgag gctcacatat chr10:71095491-71095571 38 1.81e-04 acagatggga agactgag gtgcccacag chr2:220339208-220339288 34 1.81e-04 acagatgagg agactgag gccgaggcta chr19:45871529-45871609 35 1.81e-04 acagaaagga agactgag gcccaggtgg chr1:7008152-7008232 47 1.81e-04 acagataggc agactgag gcttagagtg chr1:234728948-234729028 38 1.81e-04 acagatgagg agactgag gtttagagac chr16:23879006-23879086 48 1.81e-04 aaggatgtga agactgag gctcagggtc chr16:80007392-80007472 51 1.81e-04 acagattagt agactgag gtaaatcagg chr10:73486911-73486991 32 1.81e-04 acagatgaca agactgag gcaaagagga chr20:37592603-37592683 31 2.31e-04 ctccatctgt aaattggg tataatacct chr6:43671413-43671493 56 2.46e-04 cctcatctgt acaatggg gataataatg chr5:138053254-138053334 36 2.46e-04 ccacatctgt acaatggg aataataata chr15:85451095-85451175 51 2.60e-04 atagatggga acactgag gcctgaacaa chr10:73838843-73838923 29 2.97e-04 tcagatgata aaattgag gctcagagag chr12:57945042-57945122 61 2.97e-04 acagatgcag aaattgag gcccaaagaa chr9:126596624-126596704 54 2.97e-04 acagataagg aaattgag gcttagagac chr8:130841007-130841087 69 2.97e-04 ttcctctgta aaattgag ataa chr10:73397218-73397298 48 2.97e-04 acagatgagg aaattgag gctcaaggat chr12:117038924-11703900 30 3.31e-04 tcccacctgt caaatggg cacgacattc chr1:24235098-24235178 54 3.31e-04 cttcatctgt caaatggg CCCATTGGAA chr10:21447364-21447444 8 3.60e-04 ttatcag caactgag acacagaatg chr12:114108707-11410878 17 3.60e-04 gcagatggga caactgag gctcagagag chr10:63570162-63570242 9 3.75e-04 tgttttac aaacaggg aaactatgct chr2:178568041-178568121 19 3.75e-04 cacatgagga aaacaggg ctcagagaag chr5:115694978-115695058 33 4.37e-04 ctccagttta caaatgag gaaataagcc chr6:130071755-130071835 52 4.37e-04 tctcatccat aaagtggg ataactgccc chr22:21099994-21100074 56 4.37e-04 gctcatctgt aaagtggg cataaccctc chr3:72328044-72328124 48 4.37e-04 tctcatccat ataatggg catattgata chr10:73007708-73007788 55 4.37e-04 cctactctgt ataatggg taggagtgga chr3:5262922-5263002 68 4.37e-04 atagttgtga ggactggg tggat chr8:128985642-128985722 24 4.87e-04 atggatgtga atactgag gtcatggggg chr10:21451961-21452041 36 4.87e-04 acagatgagg atactgag gcttaggtta chr21:37947690-37947770 32 5.18e-04 acagatgagg aaacagag gcacaggagg chr7:106860427-106860507 41 5.18e-04 acagatgggt aaacagag gcatagagaa chr1:156835808-156835888 55 5.90e-04 ttgagtttct ggactgag gtcacacagc chr10:49697305-49697385 43 6.31e-04 acaggtggaa aaaccgag gctcagagaa chr20:45317259-45317339 43 6.31e-04 acaggtgaga aaaccgag gctgagaggc chr5:154238596-154238676 19 6.31e-04 caagatagga aaaccgag gcacgaaata chr19:1054438-1054518 31 6.55e-04 TTTATTGAGG GCACTGGG GAGCCATGGG chr10:72458989-72459069 39 7.20e-04 cctcatctgt gcaatggg tctaacatta chr1:12611753-12611833 29 7.20e-04 tatcctgtgg gcaatggg gagccattga chr9:123838076-123838156 35 7.57e-04 aaaagtgata gcactgag gaccagagag chr16:79946653-79946733 62 7.57e-04 ttgcacctgt aaaatgga gctgataata chr3:5094098-5094178 62 7.57e-04 tctcatctgt aaaatgga gacaataaaa chr2:16921216-16921296 7 8.02e-04 aggaag aaactgaa gcccagagag chr1:168059332-168059412 4 9.41e-04 cct gtaatggg gattagtacc chr16:57640199-57640279 15 1.03e-03 gagaaaacag gaacagag tggttaagta chr16:50775392-50775472 46 1.17e-03 acagatgagg acattgag gctcagcgtg -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AAAMTGRG MEME-1 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr16:19151211-19151291 3.4e-05 44_[+1]_28 chr19:3362680-3362760 3.4e-05 44_[+1]_28 chr6:16056838-16056918 3.4e-05 48_[+1]_24 chr10:74071523-74071603 3.4e-05 27_[+1]_45 chr4:76603909-76603989 3.4e-05 60_[+1]_12 chr15:55611902-55611982 3.4e-05 59_[+1]_13 chr10:121028087-12102816 3.4e-05 35_[+1]_37 chr1:37905118-37905198 3.4e-05 55_[+1]_17 chrX:109164328-109164408 3.4e-05 46_[+1]_26 chr3:9792894-9792974 3.4e-05 58_[+1]_14 chr1:53170188-53170268 3.4e-05 32_[+1]_40 chr16:80032244-80032324 3.4e-05 58_[+1]_14 chr3:5078256-5078336 3.4e-05 45_[+1]_27 chr11:65254221-65254301 3.4e-05 49_[+1]_23 chr4:81049350-81049430 3.4e-05 50_[+1]_22 chr6:35243799-35243879 3.4e-05 62_[+1]_10 chr1:201521674-201521754 3.4e-05 44_[+1]_28 chr17:37832975-37833055 3.4e-05 37_[+1]_35 chr1:54627626-54627706 3.4e-05 67_[+1]_5 chr10:80864193-80864273 3.4e-05 47_[+1]_25 chr11:34628470-34628550 3.4e-05 46_[+1]_26 chr1:17329157-17329237 3.4e-05 57_[+1]_15 chr2:46818867-46818947 3.4e-05 48_[+1]_24 chr12:104644285-10464436 3.4e-05 71_[+1]_1 chr20:44547525-44547605 3.4e-05 46_[+1]_26 chr1:39280979-39281059 3.4e-05 45_[+1]_27 chr20:56017011-56017091 3.4e-05 54_[+1]_18 chrX:117669227-117669307 3.4e-05 67_[+1]_5 chr10:63581969-63582049 3.4e-05 59_[+1]_13 chr1:11801702-11801782 3.4e-05 61_[+1]_11 chr10:73514423-73514503 3.4e-05 34_[+1]_38 chr1:12805777-12805857 3.4e-05 46_[+1]_26 chr18:23942151-23942231 3.4e-05 42_[+1]_30 chr9:129621539-129621619 3.4e-05 67_[+1]_5 chr3:5044741-5044821 3.4e-05 34_[+1]_38 chr6:30168496-30168576 3.4e-05 53_[+1]_19 chr11:33957778-33957858 3.4e-05 57_[+1]_15 chr16:85382226-85382306 3.4e-05 54_[+1]_18 chr6:3397699-3397779 3.4e-05 47_[+1]_25 chr16:22218788-22218868 3.4e-05 20_[+1]_52 chr6:7135392-7135472 3.4e-05 39_[+1]_33 chr1:15398577-15398657 3.4e-05 60_[+1]_12 chr10:113942913-11394299 3.4e-05 38_[+1]_34 chr5:134771815-134771895 3.4e-05 37_[+1]_35 chr16:85431724-85431804 3.4e-05 46_[+1]_26 chr15:41100142-41100222 3.4e-05 69_[+1]_3 chr19:50703098-50703178 3.4e-05 31_[+1]_41 chrX:117473058-117473138 3.4e-05 50_[+1]_22 chr21:36850094-36850174 3.4e-05 62_[+1]_10 chr2:201674738-201674818 3.4e-05 45_[+1]_27 chr9:119210919-119210999 3.4e-05 51_[+1]_21 chr19:44646089-44646169 3.4e-05 45_[+1]_27 chr10:63236451-63236531 3.4e-05 55_[+1]_17 chr9:132253217-132253297 3.4e-05 54_[+1]_18 chr12:11920136-11920216 3.4e-05 37_[+1]_35 chr7:50315173-50315253 3.4e-05 54_[+1]_18 chr19:923982-924062 5.4e-05 35_[+1]_37 chr12:57558392-57558472 5.4e-05 29_[+1]_43 chr14:24739833-24739913 5.4e-05 45_[+1]_27 chr5:10278212-10278292 5.4e-05 52_[+1]_20 chr5:173123343-173123423 5.4e-05 55_[+1]_17 chr1:53599577-53599657 5.4e-05 14_[+1]_58 chr12:125480236-12548031 5.4e-05 42_[+1]_30 chr6:6738469-6738549 5.4e-05 40_[+1]_32 chr6:21995690-21995770 5.4e-05 28_[+1]_44 chr6:43902538-43902618 5.4e-05 35_[+1]_37 chr1:15775503-15775583 5.4e-05 55_[+1]_17 chr6:158403789-158403869 5.4e-05 35_[+1]_37 chr1:120315101-120315181 5.4e-05 20_[+1]_52 chr6:47208164-47208244 5.4e-05 53_[+1]_19 chr6:39204663-39204743 5.4e-05 61_[+1]_11 chr8:128924572-128924652 5.4e-05 47_[+1]_25 chr19:3761017-3761097 5.4e-05 48_[+1]_24 chr5:131809031-131809111 5.4e-05 60_[+1]_12 chr7:149481446-149481526 5.4e-05 35_[+1]_37 chr22:25798480-25798560 5.4e-05 32_[+1]_40 chr3:14400462-14400542 5.4e-05 52_[+1]_20 chr11:64699920-64700000 5.4e-05 46_[+1]_26 chr1:45082088-45082168 5.4e-05 52_[+1]_20 chr12:68872705-68872785 5.4e-05 47_[+1]_25 chr12:71002172-71002252 5.4e-05 23_[+1]_49 chr11:94681266-94681346 5.4e-05 16_[+1]_56 chr1:26941282-26941362 5.4e-05 50_[+1]_22 chr2:12176586-12176666 5.4e-05 47_[+1]_25 chr4:13528445-13528525 5.4e-05 36_[+1]_36 chr5:125823431-125823511 5.4e-05 24_[+1]_48 chr15:64194663-64194743 5.4e-05 42_[+1]_30 chr1:51899021-51899101 5.4e-05 47_[+1]_25 chr5:148809517-148809597 5.4e-05 21_[+1]_51 chr3:14578483-14578563 5.4e-05 35_[+1]_37 chr19:42427278-42427358 5.4e-05 32_[+1]_40 chr12:48168136-48168216 5.4e-05 60_[+1]_12 chr19:17726804-17726884 5.4e-05 46_[+1]_26 chr8:98792849-98792929 5.4e-05 45_[+1]_27 chr1:234779624-234779704 5.4e-05 35_[+1]_37 chr1:31231140-31231220 5.4e-05 44_[+1]_28 chr1:24011041-24011121 5.4e-05 53_[+1]_19 chr1:236665897-236665977 5.4e-05 39_[+1]_33 chr7:25933750-25933830 5.4e-05 36_[+1]_36 chr1:120279416-120279496 5.4e-05 37_[+1]_35 chr21:39846894-39846974 5.4e-05 44_[+1]_28 chr2:12213498-12213578 5.4e-05 31_[+1]_41 chr16:79963272-79963352 5.4e-05 39_[+1]_33 chr16:27562019-27562099 5.4e-05 56_[+1]_16 chr14:24613839-24613919 5.4e-05 33_[+1]_39 chr1:206916886-206916966 5.4e-05 16_[+1]_56 chr6:30724309-30724389 8e-05 31_[+1]_41 chr10:79832488-79832568 9.1e-05 47_[+1]_25 chr16:15601945-15602025 0.00011 44_[+1]_28 chr19:55679119-55679199 0.00011 49_[+1]_23 chr11:64519223-64519303 0.00011 44_[+1]_28 chr6:14694723-14694803 0.00011 52_[+1]_20 chr9:126204243-126204323 0.00011 44_[+1]_28 chr17:73816344-73816424 0.00011 46_[+1]_26 chr19:7937879-7937959 0.00011 40_[+1]_32 chr12:111845980-11184606 0.00011 56_[+1]_16 chr14:75765051-75765131 0.00011 57_[+1]_15 chr2:197041287-197041367 0.00011 50_[+1]_22 chr6:15899125-15899205 0.00011 32_[+1]_40 chr1:154126690-154126770 0.00011 44_[+1]_28 chr3:70340362-70340442 0.00011 70_[+1]_2 chr16:56486486-56486566 0.00017 61_[+1]_11 chr1:207126740-207126820 0.00017 58_[+1]_14 chr6:159072114-159072194 0.00017 51_[+1]_21 chr13:42849829-42849909 0.00017 48_[+1]_24 chr19:17665906-17665986 0.00018 42_[+1]_30 chr10:71095491-71095571 0.00018 37_[+1]_35 chr2:220339208-220339288 0.00018 33_[+1]_39 chr19:45871529-45871609 0.00018 34_[+1]_38 chr1:7008152-7008232 0.00018 46_[+1]_26 chr1:234728948-234729028 0.00018 37_[+1]_35 chr16:23879006-23879086 0.00018 47_[+1]_25 chr16:80007392-80007472 0.00018 50_[+1]_22 chr10:73486911-73486991 0.00018 31_[+1]_41 chr20:37592603-37592683 0.00023 30_[+1]_42 chr6:43671413-43671493 0.00025 55_[+1]_17 chr5:138053254-138053334 0.00025 35_[+1]_37 chr15:85451095-85451175 0.00026 50_[+1]_22 chr10:73838843-73838923 0.0003 28_[+1]_44 chr12:57945042-57945122 0.0003 60_[+1]_12 chr9:126596624-126596704 0.0003 53_[+1]_19 chr8:130841007-130841087 0.0003 68_[+1]_4 chr10:73397218-73397298 0.0003 47_[+1]_25 chr12:117038924-11703900 0.00033 29_[+1]_43 chr1:24235098-24235178 0.00033 53_[+1]_19 chr10:21447364-21447444 0.00036 7_[+1]_65 chr12:114108707-11410878 0.00036 16_[+1]_56 chr10:63570162-63570242 0.00037 8_[+1]_64 chr2:178568041-178568121 0.00037 18_[+1]_54 chr5:115694978-115695058 0.00044 32_[+1]_40 chr6:130071755-130071835 0.00044 51_[+1]_21 chr22:21099994-21100074 0.00044 55_[+1]_17 chr3:72328044-72328124 0.00044 47_[+1]_25 chr10:73007708-73007788 0.00044 54_[+1]_18 chr3:5262922-5263002 0.00044 67_[+1]_5 chr8:128985642-128985722 0.00049 23_[+1]_49 chr10:21451961-21452041 0.00049 35_[+1]_37 chr21:37947690-37947770 0.00052 31_[+1]_41 chr7:106860427-106860507 0.00052 40_[+1]_32 chr1:156835808-156835888 0.00059 54_[+1]_18 chr10:49697305-49697385 0.00063 42_[+1]_30 chr20:45317259-45317339 0.00063 42_[+1]_30 chr5:154238596-154238676 0.00063 18_[+1]_54 chr19:1054438-1054518 0.00065 30_[+1]_42 chr10:72458989-72459069 0.00072 38_[+1]_34 chr1:12611753-12611833 0.00072 28_[+1]_44 chr9:123838076-123838156 0.00076 34_[+1]_38 chr16:79946653-79946733 0.00076 61_[+1]_11 chr3:5094098-5094178 0.00076 61_[+1]_11 chr2:16921216-16921296 0.0008 6_[+1]_66 chr1:168059332-168059412 0.00094 3_[+1]_69 chr16:57640199-57640279 0.001 14_[+1]_58 chr16:50775392-50775472 0.0012 45_[+1]_27 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AAAMTGRG MEME-1 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF AAAMTGRG width=8 seqs=173 chr16:19151211-19151291 ( 45) AAAATGGG 1 chr19:3362680-3362760 ( 45) AAAATGGG 1 chr6:16056838-16056918 ( 49) AAAATGGG 1 chr10:74071523-74071603 ( 28) AAAATGGG 1 chr4:76603909-76603989 ( 61) AAAATGGG 1 chr15:55611902-55611982 ( 60) AAAATGGG 1 chr10:121028087-12102816 ( 36) AAAATGGG 1 chr1:37905118-37905198 ( 56) AAAATGGG 1 chrX:109164328-109164408 ( 47) AAAATGGG 1 chr3:9792894-9792974 ( 59) AAAATGGG 1 chr1:53170188-53170268 ( 33) AAAATGGG 1 chr16:80032244-80032324 ( 59) AAAATGGG 1 chr3:5078256-5078336 ( 46) AAAATGGG 1 chr11:65254221-65254301 ( 50) AAAATGGG 1 chr4:81049350-81049430 ( 51) AAAATGGG 1 chr6:35243799-35243879 ( 63) AAAATGGG 1 chr1:201521674-201521754 ( 45) AAAATGGG 1 chr17:37832975-37833055 ( 38) AAAATGGG 1 chr1:54627626-54627706 ( 68) AAAATGGG 1 chr10:80864193-80864273 ( 48) AAAATGGG 1 chr11:34628470-34628550 ( 47) AAAATGGG 1 chr1:17329157-17329237 ( 58) AAAATGGG 1 chr2:46818867-46818947 ( 49) AAAATGGG 1 chr12:104644285-10464436 ( 72) AAAATGGG 1 chr20:44547525-44547605 ( 47) AAAATGGG 1 chr1:39280979-39281059 ( 46) AAAATGGG 1 chr20:56017011-56017091 ( 55) AAAATGGG 1 chrX:117669227-117669307 ( 68) AAAATGGG 1 chr10:63581969-63582049 ( 60) AAAATGGG 1 chr1:11801702-11801782 ( 62) AAAATGGG 1 chr10:73514423-73514503 ( 35) AAAATGGG 1 chr1:12805777-12805857 ( 47) AAAATGGG 1 chr18:23942151-23942231 ( 43) AAAATGGG 1 chr9:129621539-129621619 ( 68) AAAATGGG 1 chr3:5044741-5044821 ( 35) AAAATGGG 1 chr6:30168496-30168576 ( 54) AAAATGGG 1 chr11:33957778-33957858 ( 58) AAAATGGG 1 chr16:85382226-85382306 ( 55) AAAATGGG 1 chr6:3397699-3397779 ( 48) AAAATGGG 1 chr16:22218788-22218868 ( 21) AAAATGGG 1 chr6:7135392-7135472 ( 40) AAAATGGG 1 chr1:15398577-15398657 ( 61) AAAATGGG 1 chr10:113942913-11394299 ( 39) AAAATGGG 1 chr5:134771815-134771895 ( 38) AAAATGGG 1 chr16:85431724-85431804 ( 47) AAAATGGG 1 chr15:41100142-41100222 ( 70) AAAATGGG 1 chr19:50703098-50703178 ( 32) AAAATGGG 1 chrX:117473058-117473138 ( 51) AAAATGGG 1 chr21:36850094-36850174 ( 63) AAAATGGG 1 chr2:201674738-201674818 ( 46) AAAATGGG 1 chr9:119210919-119210999 ( 52) AAAATGGG 1 chr19:44646089-44646169 ( 46) AAAATGGG 1 chr10:63236451-63236531 ( 56) AAAATGGG 1 chr9:132253217-132253297 ( 55) AAAATGGG 1 chr12:11920136-11920216 ( 38) AAAATGGG 1 chr7:50315173-50315253 ( 55) AAAATGGG 1 chr19:923982-924062 ( 36) AAACTGAG 1 chr12:57558392-57558472 ( 30) AAACTGAG 1 chr14:24739833-24739913 ( 46) AAACTGAG 1 chr5:10278212-10278292 ( 53) AAACTGAG 1 chr5:173123343-173123423 ( 56) AAACTGAG 1 chr1:53599577-53599657 ( 15) AAACTGAG 1 chr12:125480236-12548031 ( 43) AAACTGAG 1 chr6:6738469-6738549 ( 41) AAACTGAG 1 chr6:21995690-21995770 ( 29) AAACTGAG 1 chr6:43902538-43902618 ( 36) AAACTGAG 1 chr1:15775503-15775583 ( 56) AAACTGAG 1 chr6:158403789-158403869 ( 36) AAACTGAG 1 chr1:120315101-120315181 ( 21) AAACTGAG 1 chr6:47208164-47208244 ( 54) AAACTGAG 1 chr6:39204663-39204743 ( 62) AAACTGAG 1 chr8:128924572-128924652 ( 48) AAACTGAG 1 chr19:3761017-3761097 ( 49) AAACTGAG 1 chr5:131809031-131809111 ( 61) AAACTGAG 1 chr7:149481446-149481526 ( 36) AAACTGAG 1 chr22:25798480-25798560 ( 33) AAACTGAG 1 chr3:14400462-14400542 ( 53) AAACTGAG 1 chr11:64699920-64700000 ( 47) AAACTGAG 1 chr1:45082088-45082168 ( 53) AAACTGAG 1 chr12:68872705-68872785 ( 48) AAACTGAG 1 chr12:71002172-71002252 ( 24) AAACTGAG 1 chr11:94681266-94681346 ( 17) AAACTGAG 1 chr1:26941282-26941362 ( 51) AAACTGAG 1 chr2:12176586-12176666 ( 48) AAACTGAG 1 chr4:13528445-13528525 ( 37) AAACTGAG 1 chr5:125823431-125823511 ( 25) AAACTGAG 1 chr15:64194663-64194743 ( 43) AAACTGAG 1 chr1:51899021-51899101 ( 48) AAACTGAG 1 chr5:148809517-148809597 ( 22) AAACTGAG 1 chr3:14578483-14578563 ( 36) AAACTGAG 1 chr19:42427278-42427358 ( 33) AAACTGAG 1 chr12:48168136-48168216 ( 61) AAACTGAG 1 chr19:17726804-17726884 ( 47) AAACTGAG 1 chr8:98792849-98792929 ( 46) AAACTGAG 1 chr1:234779624-234779704 ( 36) AAACTGAG 1 chr1:31231140-31231220 ( 45) AAACTGAG 1 chr1:24011041-24011121 ( 54) AAACTGAG 1 chr1:236665897-236665977 ( 40) AAACTGAG 1 chr7:25933750-25933830 ( 37) AAACTGAG 1 chr1:120279416-120279496 ( 38) AAACTGAG 1 chr21:39846894-39846974 ( 45) AAACTGAG 1 chr2:12213498-12213578 ( 32) AAACTGAG 1 chr16:79963272-79963352 ( 40) AAACTGAG 1 chr16:27562019-27562099 ( 57) AAACTGAG 1 chr14:24613839-24613919 ( 34) AAACTGAG 1 chr1:206916886-206916966 ( 17) AAACTGAG 1 chr6:30724309-30724389 ( 32) AAAATGAG 1 chr10:79832488-79832568 ( 48) GAACTGGG 1 chr16:15601945-15602025 ( 45) GAAATGGG 1 chr19:55679119-55679199 ( 50) GAAATGGG 1 chr11:64519223-64519303 ( 45) GAAATGGG 1 chr6:14694723-14694803 ( 53) GAAATGGG 1 chr9:126204243-126204323 ( 45) GAAATGGG 1 chr17:73816344-73816424 ( 47) GAAATGGG 1 chr19:7937879-7937959 ( 41) GAAATGGG 1 chr12:111845980-11184606 ( 57) GAAATGGG 1 chr14:75765051-75765131 ( 58) GAAATGGG 1 chr2:197041287-197041367 ( 51) GAAATGGG 1 chr6:15899125-15899205 ( 33) GAAATGGG 1 chr1:154126690-154126770 ( 45) GAAATGGG 1 chr3:70340362-70340442 ( 71) GAAATGGG 1 chr16:56486486-56486566 ( 62) AGAATGGG 1 chr1:207126740-207126820 ( 59) AGAATGGG 1 chr6:159072114-159072194 ( 52) AGAATGGG 1 chr13:42849829-42849909 ( 49) AGAATGGG 1 chr19:17665906-17665986 ( 43) AGACTGAG 1 chr10:71095491-71095571 ( 38) AGACTGAG 1 chr2:220339208-220339288 ( 34) AGACTGAG 1 chr19:45871529-45871609 ( 35) AGACTGAG 1 chr1:7008152-7008232 ( 47) AGACTGAG 1 chr1:234728948-234729028 ( 38) AGACTGAG 1 chr16:23879006-23879086 ( 48) AGACTGAG 1 chr16:80007392-80007472 ( 51) AGACTGAG 1 chr10:73486911-73486991 ( 32) AGACTGAG 1 chr20:37592603-37592683 ( 31) AAATTGGG 1 chr6:43671413-43671493 ( 56) ACAATGGG 1 chr5:138053254-138053334 ( 36) ACAATGGG 1 chr15:85451095-85451175 ( 51) ACACTGAG 1 chr10:73838843-73838923 ( 29) AAATTGAG 1 chr12:57945042-57945122 ( 61) AAATTGAG 1 chr9:126596624-126596704 ( 54) AAATTGAG 1 chr8:130841007-130841087 ( 69) AAATTGAG 1 chr10:73397218-73397298 ( 48) AAATTGAG 1 chr12:117038924-11703900 ( 30) CAAATGGG 1 chr1:24235098-24235178 ( 54) CAAATGGG 1 chr10:21447364-21447444 ( 8) CAACTGAG 1 chr12:114108707-11410878 ( 17) CAACTGAG 1 chr10:63570162-63570242 ( 9) AAACAGGG 1 chr2:178568041-178568121 ( 19) AAACAGGG 1 chr5:115694978-115695058 ( 33) CAAATGAG 1 chr6:130071755-130071835 ( 52) AAAGTGGG 1 chr22:21099994-21100074 ( 56) AAAGTGGG 1 chr3:72328044-72328124 ( 48) ATAATGGG 1 chr10:73007708-73007788 ( 55) ATAATGGG 1 chr3:5262922-5263002 ( 68) GGACTGGG 1 chr8:128985642-128985722 ( 24) ATACTGAG 1 chr10:21451961-21452041 ( 36) ATACTGAG 1 chr21:37947690-37947770 ( 32) AAACAGAG 1 chr7:106860427-106860507 ( 41) AAACAGAG 1 chr1:156835808-156835888 ( 55) GGACTGAG 1 chr10:49697305-49697385 ( 43) AAACCGAG 1 chr20:45317259-45317339 ( 43) AAACCGAG 1 chr5:154238596-154238676 ( 19) AAACCGAG 1 chr19:1054438-1054518 ( 31) GCACTGGG 1 chr10:72458989-72459069 ( 39) GCAATGGG 1 chr1:12611753-12611833 ( 29) GCAATGGG 1 chr9:123838076-123838156 ( 35) GCACTGAG 1 chr16:79946653-79946733 ( 62) AAAATGGA 1 chr3:5094098-5094178 ( 62) AAAATGGA 1 chr2:16921216-16921296 ( 7) AAACTGAA 1 chr1:168059332-168059412 ( 4) GTAATGGG 1 chr16:57640199-57640279 ( 15) GAACAGAG 1 chr16:50775392-50775472 ( 46) ACATTGAG 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AAAMTGRG MEME-1 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 18250 bayes= 7.7259 E= 6.7e-183 155 -289 -77 -1408 154 -221 -132 -328 180 -1408 -1408 -1408 79 108 -423 -280 -332 -362 -1408 176 -1408 -1408 220 -1408 70 -1408 129 -1408 -405 -1408 218 -1408 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AAAMTGRG MEME-1 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 173 E= 6.7e-183 0.843931 0.028902 0.127168 0.000000 0.838150 0.046243 0.086705 0.028902 1.000000 0.000000 0.000000 0.000000 0.497110 0.450867 0.011561 0.040462 0.028902 0.017341 0.000000 0.953757 0.000000 0.000000 1.000000 0.000000 0.468208 0.000000 0.531792 0.000000 0.017341 0.000000 0.982659 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AAAMTGRG MEME-1 regular expression -------------------------------------------------------------------------------- AAA[AC]TG[GA]G -------------------------------------------------------------------------------- Time 5.09 secs. ******************************************************************************** ******************************************************************************** MOTIF CYCAKTTT MEME-2 width = 8 sites = 184 llr = 1383 E-value = 2.1e-171 ******************************************************************************** -------------------------------------------------------------------------------- Motif CYCAKTTT MEME-2 Description -------------------------------------------------------------------------------- Simplified A :::a1::1 pos.-specific C 95a:12:1 probability G ::::3::2 matrix T 15::68a7 bits 2.2 * 2.0 * 1.8 * ** * 1.6 * ** * Relative 1.3 * ** * Entropy 1.1 **** ** (10.8 bits) 0.9 **** ** 0.7 **** ** 0.4 ******** 0.2 ******** 0.0 -------- Multilevel CCCATTTT consensus T G G sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CYCAKTTT MEME-2 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr12:104994335-10499441 13 1.76e-05 ccctgtcatt cccatttt acagacaaag chr19:923982-924062 18 1.76e-05 ttaacattgg cccatttt atagagggat chr15:85451095-85451175 33 1.76e-05 tggtcatgtc cccatttt atagatggga chr12:116822103-11682218 33 1.76e-05 tgtcaatgat cccatttt acagatagga chr12:57558392-57558472 12 1.76e-05 ttttattatc cccatttt acagatgaaa chr14:24739833-24739913 28 1.76e-05 aattattagc cccatttt acagatgagc chr6:6738469-6738549 23 1.76e-05 tgccgttatg cccatttt tcagatgatg chr6:21995690-21995770 11 1.76e-05 acagtatatt cccatttt tcagatgaga chr6:43902538-43902618 18 1.76e-05 CGGtattatc cccatttt acagatttgg chr1:15775503-15775583 38 1.76e-05 taacatcatg cccatttt acagatgaga chr6:158403789-158403869 18 1.76e-05 tattattatc cccatttt gcagatgagc chr1:120315101-120315181 3 1.76e-05 ag cccatttt acagatgagg chr2:68641740-68641820 8 1.76e-05 tattatt cccatttt acagatgagg chr9:126596624-126596704 36 1.76e-05 attatcttcc cccatttt acagataagg chr6:47208164-47208244 36 1.76e-05 ttgtatcagc cccatttt acagatgagg chr6:39204663-39204743 44 1.76e-05 ggatgatcag cccatttt acagatgagg chr2:220339208-220339288 16 1.76e-05 ggttattatc cccatttt acagatgagg chr19:3761017-3761097 31 1.76e-05 agttaggatt cccatttt acagatgaag chr17:47668361-47668441 31 1.76e-05 atgagatata cccatttt acagatgagg chr19:45871529-45871609 17 1.76e-05 cataattatc cccatttt acagaaagga chr5:131809031-131809111 43 1.76e-05 tgatgttata cccatttt acagatgaag chr7:149481446-149481526 18 1.76e-05 aaaaattgtt cccatttt gcagatgagg chr6:30724309-30724389 14 1.76e-05 tatctataca cccatttt acagatgaga chr21:37947690-37947770 14 1.76e-05 catcattatt cccatttt acagatgagg chr1:7008152-7008232 29 1.76e-05 catgtttatt cccatttt acagataggc chr22:25798480-25798560 15 1.76e-05 gattcttatc cccatttt acagctgaga chr2:65632231-65632311 37 1.76e-05 TATACATCAG cccatttt ccaggagaga chr11:64699920-64700000 29 1.76e-05 gtattattag cccatttt acagatgaga chr8:128985642-128985722 6 1.76e-05 atgtc cccatttt atggatgtga chr1:45082088-45082168 35 1.76e-05 aataattgct cccatttt acagaggaag chr12:68872705-68872785 30 1.76e-05 taaaatgaaa cccatttt acagatgagg chr10:73397218-73397298 30 1.76e-05 ctgcattctt cccatttt acagatgagg chr12:71002172-71002252 6 1.76e-05 acact cccatttt acagataaga chr2:12176586-12176666 30 1.76e-05 tattgtcatc cccatttt acagatgaga chr6:31739237-31739317 36 1.76e-05 atAACTGata cccatttt acagatgatg chr5:125823431-125823511 7 1.76e-05 actgtt cccatttt acagatgaag chr19:45076582-45076662 18 1.76e-05 tcttgctgtc cccatttt atagatagaa chr5:148809517-148809597 3 1.76e-05 gc cccatttt acagatgaga chr3:14578483-14578563 18 1.76e-05 tgttattctc cccatttt acagctggga chr10:21447364-21447444 26 1.76e-05 acacagaatg cccatttt gcagatggga chr19:17726804-17726884 29 1.76e-05 cttgactgtc cccatttt acagatgaga chr8:98792849-98792929 28 1.76e-05 ttttcttatt cccatttt acagatgaga chr1:234779624-234779704 18 1.76e-05 ctattattac cccatttt acagatctgc chr20:45317259-45317339 25 1.76e-05 tactatgtct cccatttt acaggtgaga chr1:31231140-31231220 27 1.76e-05 tattatgatc cccatttt acagatgaag chr7:106860427-106860507 23 1.76e-05 ctattacatc cccatttt acagatgggt chr1:24011041-24011121 35 1.76e-05 TCttatggta cccatttt acagatgagg chr21:39846894-39846974 26 1.76e-05 taccattatg cccatttt aaagatgagg chr2:12213498-12213578 14 1.76e-05 tattattatc cccatttt acagataacg chr10:21451961-21452041 18 1.76e-05 gtctattata cccatttt acagatgagg chr19:17665906-17665986 25 4.07e-05 tctctatgat ctcatttt atagatggac chr3:5078256-5078336 12 5.43e-05 cgatatgtta cccagttt cccttgagct chr16:19151211-19151291 27 7.21e-05 gcctctgaac ctcagttt attcacctgc chr19:3362680-3362760 28 7.21e-05 ttcttacagc ctcagttt ctcatctgta chr11:64519223-64519303 27 7.21e-05 ctctcttagc ctcagttt gcccatctgt chr6:16056838-16056918 31 7.21e-05 atctctgtgc ctcagttt gctcatctat chr20:33755751-33755831 46 7.21e-05 ctctctgagc ctcagttt cttagtaaaa chr1:37905118-37905198 38 7.21e-05 acctcagagc ctcagttt ccttatctgt chr3:9792894-9792974 41 7.21e-05 ttctctatga ctcagttt tgccacctgt chr22:26829025-26829105 57 7.21e-05 ttctctgagc ctcagttt tctcatctgt chr4:81049350-81049430 33 7.21e-05 gtttcagtac ctcagttt tcctatcttt chr17:37832975-37833055 20 7.21e-05 cttgctgtgc ctcagttt tctcatctgc chr1:54627626-54627706 50 7.21e-05 ccctctgtat ctcagttt cctcatctgt chr10:80864193-80864273 30 7.21e-05 ttgttaaagc ctcagttt tgtcatctgc chr12:117038924-11703900 12 7.21e-05 tgatcggcac ctcagttt tcccacctgt chr6:130071755-130071835 34 7.21e-05 ctccttaagc ctcagttt tctcatccat chr9:126204243-126204323 27 7.21e-05 atctctaaga ctcagttt cctcatctgt chr6:43671413-43671493 38 7.21e-05 cgctctgtgc ctcagttt cctcatctgt chr1:17329157-17329237 40 7.21e-05 ctctctgtgc ctcagttt tctcatctgc chr16:56486486-56486566 44 7.21e-05 Gctctgtact ctcagttt cttcatctgt chr20:44547525-44547605 29 7.21e-05 ctttttgaac ctcagttt ccacatctgt chr1:39280979-39281059 28 7.21e-05 ctctctgacc ctcagttt cttccactgt chr20:56017011-56017091 37 7.21e-05 ctcttggagc ctcagttt tgctatcctt chr5:138053254-138053334 18 7.21e-05 ttctccaagt ctcagttt ccacatctgt chr1:11801702-11801782 44 7.21e-05 ccttctgagc ctcagttt tctcagctgt chr5:125874428-125874508 48 7.21e-05 ctctctgtgc ctcagttt ccaaatcaat chr1:53139340-53139420 46 7.21e-05 tcttctaagg ctcagttt acctgtctgt chr20:37002350-37002430 56 7.21e-05 cactctgtgc ctcagttt ccttatctgt chr16:85382226-85382306 37 7.21e-05 tccgctcagc ctcagttt tcccatctat chr12:111845980-11184606 39 7.21e-05 actgccccac ctcagttt cctcatctgt chr6:3397699-3397779 30 7.21e-05 AATTAGAGgt ctcagttt ccttaactgt chr3:72328044-72328124 30 7.21e-05 gttctggtgc ctcagttt tctcatccat chr16:85431724-85431804 29 7.21e-05 ctctcagtac ctcagttt cctcatctgc chr15:41100142-41100222 52 7.21e-05 gtcattgatc ctcagttt ccatttctgt chr16:79932745-79932825 60 7.21e-05 gctctctaga ctcagttt cctaatctat chr2:197041287-197041367 33 7.21e-05 ttgggcgatc ctcagttt tctcatctgt chr21:36850094-36850174 45 7.21e-05 atctctgtgt ctcagttt tctcatctgt chr9:119210919-119210999 34 7.21e-05 accattgagc ctcagttt ccttatctgt chr3:5262922-5263002 7 7.21e-05 gatggc ctcagttt tcctgtctag chr10:63236451-63236531 38 7.21e-05 ctctctgtgc ctcagttt tcaaatctgt chr13:42849829-42849909 31 7.21e-05 tgcttgatga ctcagttt tcctatgcgt chr3:5094098-5094178 43 7.21e-05 caagttaggc ctcagttt ttctcatctg chr1:40366001-40366081 21 7.21e-05 Atctctaagc ctcagttt ttccatctgt chr12:11920136-11920216 20 7.21e-05 acctcccagc ctcagttt ccttatctct chr7:50315173-50315253 36 7.21e-05 tgttctgagc ctcagttt tacccatctg chr5:10278212-10278292 35 8.57e-05 tctccccata cccatttg acagatgcaa chr12:125480236-12548031 25 8.57e-05 tgttactgtt cccatttg acagatgagg chr10:21455556-21455636 41 8.57e-05 tattactgtg cccatttg acagatggag chr19:35632958-35633038 28 8.57e-05 tgttattaac cccatttg acagatgagg chr10:49697305-49697385 25 8.57e-05 cattgatgac cccatttg acaggtggaa chr10:73486911-73486991 14 1.17e-04 tgttaatacc cccatctt acagatgaca chr6:35243799-35243879 45 1.69e-04 acctctaagc ctcagttg cctcatctgt chr10:22517264-22517344 33 1.69e-04 cgcactgtgc ctcagttg cctcatctgt chr1:206916886-206916966 26 1.83e-04 taaactgagg ctcagctt gattaagtac chr9:123838076-123838156 17 2.25e-04 ggttatcatc cccattta aaaagtgata chr10:74071523-74071603 19 2.25e-04 gctcaatttc cccatctg taaaatggga chr19:7937879-7937959 32 2.25e-04 TCTCTATTTT CCCATCTG TGAAATGGGC chr3:5044741-5044821 66 2.25e-04 aatgagttaa cccattta aagcatg chr11:73562281-73562361 22 2.25e-04 ttagtatatt cccattta acagatgtgg chr9:132020494-132020574 18 2.25e-04 TGACAACTCc cccattta tcagatgagg chr1:26941282-26941362 34 2.25e-04 tgttattatt cccattta cagatgacaa chr10:113942913-11394299 30 2.25e-04 ccttagtttt cccatctg gaaaatgggc chr5:134771815-134771895 29 2.25e-04 ccttggtttt cccatctg taaaatgggc chr1:211784236-211784316 15 2.25e-04 ctatcttatc cccacttt actgatgagg chr16:23879006-23879086 30 2.25e-04 GTtcattatt cccacttt aaggatgtga chr1:236665897-236665977 22 2.25e-04 tcttcttatc cccacttt agaggtggga chr7:25933750-25933830 19 2.25e-04 acaagatagc cccattta ccagctgagc chr14:24613839-24613919 16 2.25e-04 atttattgta cccattta acagatgaaa chr5:138855590-138855670 44 2.56e-04 tgattatgat cccatttc acaggttgaa chr1:156835808-156835888 8 2.56e-04 tcttgtc cccatttc atagatgaga chr9:117159651-117159731 34 2.56e-04 tcagttccag cccatttc ttctccttct chr4:13528445-13528525 19 2.56e-04 tatcactgca cccaattt acagatgagc chr19:42427278-42427358 15 2.56e-04 atgatggatg cccatttc acagatgtgg chr1:120279416-120279496 20 2.56e-04 ataggatcaa cccatttc acagataaag chr1:168059332-168059412 22 2.56e-04 gattagtacc cccatttc acagatgggg chr1:234913697-234913777 26 2.56e-04 tattattatc cccatttc actgatgagg chr16:80007392-80007472 33 2.56e-04 agcaattatc cccaattt acagattagt chr4:76603909-76603989 52 3.11e-04 ctcagtgttt ctcatctg taaaatgggg chr1:53170188-53170268 24 3.11e-04 cctcagtctt ctcatctg taaaatggga chr11:65254221-65254301 41 3.11e-04 cctccatttc ctcatctg taaaatgggt chr10:72458989-72459069 30 3.11e-04 cctctatttc ctcatctg tgcaatgggt chr10:63538040-63538120 49 3.11e-04 cctctgtttg ctcatctg taaaagggga chr6:14694723-14694803 44 3.11e-04 ccttagtttt ctcatctg tgaaatggga chr11:34628470-34628550 38 3.11e-04 cctctgtttc ctcatctg taaaatggga chr1:211756488-211756568 56 3.11e-04 ctctctgggc ctcacttt ccacatcttc chr2:46818867-46818947 40 3.11e-04 tgtcagtttc ctcatctg taaaatgggt chr10:63581969-63582049 51 3.11e-04 cctcagtgtc ctcatctg aaaaatgggg chr1:12805777-12805857 38 3.11e-04 cttcagtgtc ctcatctg taaaatgggt chr22:21099994-21100074 47 3.11e-04 cctcaatgtg ctcatctg taaagtgggc chr1:15398577-15398657 52 3.11e-04 cctcagtgta ctcatctg taaaatgggt chr19:50703098-50703178 23 3.11e-04 cctcagtgtc ctcatctg taaaatgggt chr6:159072114-159072194 43 3.11e-04 actcactctc ctcatctg tagaatgggt chr1:154126690-154126770 27 3.11e-04 Gtctctgggc ctcacttt cctcgtctgt chr3:70340362-70340442 62 3.11e-04 actctatttt ctcatctg tgaaatggga chr2:178568041-178568121 1 3.11e-04 . ctcattta cacatgagga chr15:55611902-55611982 42 3.97e-04 atttctgggc ctcaattt gctcgtctgt chr16:80032244-80032324 41 3.97e-04 tgtctgcagc ctcaattt tctcttctat chr1:201521674-201521754 27 3.97e-04 ctccctgagc ctcaattt tctcgtctgt chr12:57945042-57945122 43 3.97e-04 tatcaatatt tccatttt acagatgcag chrX:117669227-117669307 50 3.97e-04 ctgcctaagc ctcaattt cctcatctgt chr1:51899021-51899101 30 3.97e-04 tattcatatt tccatttt acagataaat chr12:48168136-48168216 43 3.97e-04 tacgattatg tccatttt acagataagg chrX:117473058-117473138 33 3.97e-04 tcttctaaac ctcaattt ccctacctgt chr16:50775392-50775472 28 3.97e-04 tactatgatc tccatttt acagatgagg chr16:79963272-79963352 22 3.97e-04 ttcttatcac tccatttt acagattaaa chr16:27562019-27562099 39 3.97e-04 tcagcgttgt tccatttt acagatgatg chr20:37592603-37592683 13 4.67e-04 ttctcaaagt ctcagtta ctccatctgt chr7:103632010-103632090 1 4.67e-04 . ttcatttt actatgatga chr6:15899125-15899205 15 4.67e-04 GAtctttggc ctcagtta cttaacctgt chr5:115694978-115695058 24 5.08e-04 gtgtattatc tccagttt acaaatgagg chr3:14295592-14295672 49 5.08e-04 cctggggcca cccacttg ccatctctgt chr10:71095491-71095571 20 5.08e-04 taggaacgca cccacttg acagatggga chr9:129621539-129621619 49 5.08e-04 ctctctgagc ctcagttc cctcttggat chr16:15601945-15602025 36 5.83e-04 cctcgacttc cccatcta tgaaatggga chr7:107541099-107541179 18 5.83e-04 gtctctgcaa ctcacttg ctggttaacc chr2:33088535-33088615 66 5.83e-04 ctctctgagc ttcagttt tatctgt chr10:73007708-73007788 73 6.43e-04 taggagtgga ctcaatTG chr1:207126740-207126820 50 6.43e-04 cctcaatgtt cccatctc tagaatggga chr11:33957778-33957858 49 6.88e-04 ccttaacttc ctcatcta taaaatgggc chr1:234728948-234729028 20 6.88e-04 tattattatt cccattct acagatgagg chr10:72981559-72981639 73 7.71e-04 gcttagttcc ttcatttg chr9:132253217-132253297 37 7.71e-04 tgtctggagc ctcaactt tctcctctgt chr16:87293218-87293298 30 9.22e-04 cctccatctc ctcagctc tcagataaca chr18:23942151-23942231 34 9.22e-04 ctcaattatc cccacctg taaaatgggc chr19:55679119-55679199 32 9.88e-04 ctttctgagc ctcagtct gctgctctgt chr12:7795678-7795758 62 1.15e-03 ggcacaagcg ctcaatta gctgagctaa chr6:30168496-30168576 45 1.15e-03 cctcagtgta tccatctg taaaatggga chr19:56859847-56859927 67 1.15e-03 ggcacaaacg ctcaatta gctgag chr2:201674738-201674818 37 1.15e-03 cctcggcttt tccatctg taaaatggga chr6:7993815-7993895 31 1.23e-03 ttagtgctaa cccatcct ttttcatggc chr10:121028087-12102816 27 1.31e-03 cctctgtgtt ttcatctg taaaatgggt chr1:24235098-24235178 45 1.31e-03 ccttagtggc ttcatctg tcaaatgggC chr7:75364560-75364640 64 1.40e-03 TGAGACCGtt tccagctg tgtgacttc chr19:3143106-3143186 27 1.54e-03 CCCCTGGGGT TCCacttg ctgtgtgacc -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CYCAKTTT MEME-2 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr12:104994335-10499441 1.8e-05 12_[+2]_60 chr19:923982-924062 1.8e-05 17_[+2]_55 chr15:85451095-85451175 1.8e-05 32_[+2]_40 chr12:116822103-11682218 1.8e-05 32_[+2]_40 chr12:57558392-57558472 1.8e-05 11_[+2]_61 chr14:24739833-24739913 1.8e-05 27_[+2]_45 chr6:6738469-6738549 1.8e-05 22_[+2]_50 chr6:21995690-21995770 1.8e-05 10_[+2]_62 chr6:43902538-43902618 1.8e-05 17_[+2]_55 chr1:15775503-15775583 1.8e-05 37_[+2]_35 chr6:158403789-158403869 1.8e-05 17_[+2]_55 chr1:120315101-120315181 1.8e-05 2_[+2]_70 chr2:68641740-68641820 1.8e-05 7_[+2]_65 chr9:126596624-126596704 1.8e-05 35_[+2]_37 chr6:47208164-47208244 1.8e-05 35_[+2]_37 chr6:39204663-39204743 1.8e-05 43_[+2]_29 chr2:220339208-220339288 1.8e-05 15_[+2]_57 chr19:3761017-3761097 1.8e-05 30_[+2]_42 chr17:47668361-47668441 1.8e-05 30_[+2]_42 chr19:45871529-45871609 1.8e-05 16_[+2]_56 chr5:131809031-131809111 1.8e-05 42_[+2]_30 chr7:149481446-149481526 1.8e-05 17_[+2]_55 chr6:30724309-30724389 1.8e-05 13_[+2]_59 chr21:37947690-37947770 1.8e-05 13_[+2]_59 chr1:7008152-7008232 1.8e-05 28_[+2]_44 chr22:25798480-25798560 1.8e-05 14_[+2]_58 chr2:65632231-65632311 1.8e-05 36_[+2]_36 chr11:64699920-64700000 1.8e-05 28_[+2]_44 chr8:128985642-128985722 1.8e-05 5_[+2]_67 chr1:45082088-45082168 1.8e-05 34_[+2]_38 chr12:68872705-68872785 1.8e-05 29_[+2]_43 chr10:73397218-73397298 1.8e-05 29_[+2]_43 chr12:71002172-71002252 1.8e-05 5_[+2]_67 chr2:12176586-12176666 1.8e-05 29_[+2]_43 chr6:31739237-31739317 1.8e-05 35_[+2]_37 chr5:125823431-125823511 1.8e-05 6_[+2]_66 chr19:45076582-45076662 1.8e-05 17_[+2]_55 chr5:148809517-148809597 1.8e-05 2_[+2]_70 chr3:14578483-14578563 1.8e-05 17_[+2]_55 chr10:21447364-21447444 1.8e-05 25_[+2]_47 chr19:17726804-17726884 1.8e-05 28_[+2]_44 chr8:98792849-98792929 1.8e-05 27_[+2]_45 chr1:234779624-234779704 1.8e-05 17_[+2]_55 chr20:45317259-45317339 1.8e-05 24_[+2]_48 chr1:31231140-31231220 1.8e-05 26_[+2]_46 chr7:106860427-106860507 1.8e-05 22_[+2]_50 chr1:24011041-24011121 1.8e-05 34_[+2]_38 chr21:39846894-39846974 1.8e-05 25_[+2]_47 chr2:12213498-12213578 1.8e-05 13_[+2]_59 chr10:21451961-21452041 1.8e-05 17_[+2]_55 chr19:17665906-17665986 4.1e-05 24_[+2]_48 chr3:5078256-5078336 5.4e-05 11_[+2]_61 chr16:19151211-19151291 7.2e-05 26_[+2]_46 chr19:3362680-3362760 7.2e-05 27_[+2]_45 chr11:64519223-64519303 7.2e-05 26_[+2]_46 chr6:16056838-16056918 7.2e-05 30_[+2]_42 chr20:33755751-33755831 7.2e-05 45_[+2]_27 chr1:37905118-37905198 7.2e-05 37_[+2]_35 chr3:9792894-9792974 7.2e-05 40_[+2]_32 chr22:26829025-26829105 7.2e-05 56_[+2]_16 chr4:81049350-81049430 7.2e-05 32_[+2]_40 chr17:37832975-37833055 7.2e-05 19_[+2]_53 chr1:54627626-54627706 7.2e-05 49_[+2]_23 chr10:80864193-80864273 7.2e-05 29_[+2]_43 chr12:117038924-11703900 7.2e-05 11_[+2]_61 chr6:130071755-130071835 7.2e-05 33_[+2]_39 chr9:126204243-126204323 7.2e-05 26_[+2]_46 chr6:43671413-43671493 7.2e-05 37_[+2]_35 chr1:17329157-17329237 7.2e-05 39_[+2]_33 chr16:56486486-56486566 7.2e-05 43_[+2]_29 chr20:44547525-44547605 7.2e-05 28_[+2]_44 chr1:39280979-39281059 7.2e-05 27_[+2]_45 chr20:56017011-56017091 7.2e-05 36_[+2]_36 chr5:138053254-138053334 7.2e-05 17_[+2]_55 chr1:11801702-11801782 7.2e-05 43_[+2]_29 chr5:125874428-125874508 7.2e-05 47_[+2]_25 chr1:53139340-53139420 7.2e-05 45_[+2]_27 chr20:37002350-37002430 7.2e-05 55_[+2]_17 chr16:85382226-85382306 7.2e-05 36_[+2]_36 chr12:111845980-11184606 7.2e-05 38_[+2]_34 chr6:3397699-3397779 7.2e-05 29_[+2]_43 chr3:72328044-72328124 7.2e-05 29_[+2]_43 chr16:85431724-85431804 7.2e-05 28_[+2]_44 chr15:41100142-41100222 7.2e-05 51_[+2]_21 chr16:79932745-79932825 7.2e-05 59_[+2]_13 chr2:197041287-197041367 7.2e-05 32_[+2]_40 chr21:36850094-36850174 7.2e-05 44_[+2]_28 chr9:119210919-119210999 7.2e-05 33_[+2]_39 chr3:5262922-5263002 7.2e-05 6_[+2]_66 chr10:63236451-63236531 7.2e-05 37_[+2]_35 chr13:42849829-42849909 7.2e-05 30_[+2]_42 chr3:5094098-5094178 7.2e-05 42_[+2]_30 chr1:40366001-40366081 7.2e-05 20_[+2]_52 chr12:11920136-11920216 7.2e-05 19_[+2]_53 chr7:50315173-50315253 7.2e-05 35_[+2]_37 chr5:10278212-10278292 8.6e-05 34_[+2]_38 chr12:125480236-12548031 8.6e-05 24_[+2]_48 chr10:21455556-21455636 8.6e-05 40_[+2]_32 chr19:35632958-35633038 8.6e-05 27_[+2]_45 chr10:49697305-49697385 8.6e-05 24_[+2]_48 chr10:73486911-73486991 0.00012 13_[+2]_59 chr6:35243799-35243879 0.00017 44_[+2]_28 chr10:22517264-22517344 0.00017 32_[+2]_40 chr1:206916886-206916966 0.00018 25_[+2]_47 chr9:123838076-123838156 0.00022 16_[+2]_56 chr10:74071523-74071603 0.00022 18_[+2]_54 chr19:7937879-7937959 0.00022 31_[+2]_41 chr3:5044741-5044821 0.00022 65_[+2]_7 chr11:73562281-73562361 0.00022 21_[+2]_51 chr9:132020494-132020574 0.00022 17_[+2]_55 chr1:26941282-26941362 0.00022 33_[+2]_39 chr10:113942913-11394299 0.00022 29_[+2]_43 chr5:134771815-134771895 0.00022 28_[+2]_44 chr1:211784236-211784316 0.00022 14_[+2]_58 chr16:23879006-23879086 0.00022 29_[+2]_43 chr1:236665897-236665977 0.00022 21_[+2]_51 chr7:25933750-25933830 0.00022 18_[+2]_54 chr14:24613839-24613919 0.00022 15_[+2]_57 chr5:138855590-138855670 0.00026 43_[+2]_29 chr1:156835808-156835888 0.00026 7_[+2]_65 chr9:117159651-117159731 0.00026 33_[+2]_39 chr4:13528445-13528525 0.00026 18_[+2]_54 chr19:42427278-42427358 0.00026 14_[+2]_58 chr1:120279416-120279496 0.00026 19_[+2]_53 chr1:168059332-168059412 0.00026 21_[+2]_51 chr1:234913697-234913777 0.00026 25_[+2]_47 chr16:80007392-80007472 0.00026 32_[+2]_40 chr4:76603909-76603989 0.00031 51_[+2]_21 chr1:53170188-53170268 0.00031 23_[+2]_49 chr11:65254221-65254301 0.00031 40_[+2]_32 chr10:72458989-72459069 0.00031 29_[+2]_43 chr10:63538040-63538120 0.00031 48_[+2]_24 chr6:14694723-14694803 0.00031 43_[+2]_29 chr11:34628470-34628550 0.00031 37_[+2]_35 chr1:211756488-211756568 0.00031 55_[+2]_17 chr2:46818867-46818947 0.00031 39_[+2]_33 chr10:63581969-63582049 0.00031 50_[+2]_22 chr1:12805777-12805857 0.00031 37_[+2]_35 chr22:21099994-21100074 0.00031 46_[+2]_26 chr1:15398577-15398657 0.00031 51_[+2]_21 chr19:50703098-50703178 0.00031 22_[+2]_50 chr6:159072114-159072194 0.00031 42_[+2]_30 chr1:154126690-154126770 0.00031 26_[+2]_46 chr3:70340362-70340442 0.00031 61_[+2]_11 chr2:178568041-178568121 0.00031 [+2]_72 chr15:55611902-55611982 0.0004 41_[+2]_31 chr16:80032244-80032324 0.0004 40_[+2]_32 chr1:201521674-201521754 0.0004 26_[+2]_46 chr12:57945042-57945122 0.0004 42_[+2]_30 chrX:117669227-117669307 0.0004 49_[+2]_23 chr1:51899021-51899101 0.0004 29_[+2]_43 chr12:48168136-48168216 0.0004 42_[+2]_30 chrX:117473058-117473138 0.0004 32_[+2]_40 chr16:50775392-50775472 0.0004 27_[+2]_45 chr16:79963272-79963352 0.0004 21_[+2]_51 chr16:27562019-27562099 0.0004 38_[+2]_34 chr20:37592603-37592683 0.00047 12_[+2]_60 chr7:103632010-103632090 0.00047 [+2]_72 chr6:15899125-15899205 0.00047 14_[+2]_58 chr5:115694978-115695058 0.00051 23_[+2]_49 chr3:14295592-14295672 0.00051 48_[+2]_24 chr10:71095491-71095571 0.00051 19_[+2]_53 chr9:129621539-129621619 0.00051 48_[+2]_24 chr16:15601945-15602025 0.00058 35_[+2]_37 chr7:107541099-107541179 0.00058 17_[+2]_55 chr2:33088535-33088615 0.00058 65_[+2]_7 chr10:73007708-73007788 0.00064 72_[+2] chr1:207126740-207126820 0.00064 49_[+2]_23 chr11:33957778-33957858 0.00069 48_[+2]_24 chr1:234728948-234729028 0.00069 19_[+2]_53 chr10:72981559-72981639 0.00077 72_[+2] chr9:132253217-132253297 0.00077 36_[+2]_36 chr16:87293218-87293298 0.00092 29_[+2]_43 chr18:23942151-23942231 0.00092 33_[+2]_39 chr19:55679119-55679199 0.00099 31_[+2]_41 chr12:7795678-7795758 0.0012 61_[+2]_11 chr6:30168496-30168576 0.0012 44_[+2]_28 chr19:56859847-56859927 0.0012 66_[+2]_6 chr2:201674738-201674818 0.0012 36_[+2]_36 chr6:7993815-7993895 0.0012 30_[+2]_42 chr10:121028087-12102816 0.0013 26_[+2]_46 chr1:24235098-24235178 0.0013 44_[+2]_28 chr7:75364560-75364640 0.0014 63_[+2]_9 chr19:3143106-3143186 0.0015 26_[+2]_46 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CYCAKTTT MEME-2 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF CYCAKTTT width=8 seqs=184 chr12:104994335-10499441 ( 13) CCCATTTT 1 chr19:923982-924062 ( 18) CCCATTTT 1 chr15:85451095-85451175 ( 33) CCCATTTT 1 chr12:116822103-11682218 ( 33) CCCATTTT 1 chr12:57558392-57558472 ( 12) CCCATTTT 1 chr14:24739833-24739913 ( 28) CCCATTTT 1 chr6:6738469-6738549 ( 23) CCCATTTT 1 chr6:21995690-21995770 ( 11) CCCATTTT 1 chr6:43902538-43902618 ( 18) CCCATTTT 1 chr1:15775503-15775583 ( 38) CCCATTTT 1 chr6:158403789-158403869 ( 18) CCCATTTT 1 chr1:120315101-120315181 ( 3) CCCATTTT 1 chr2:68641740-68641820 ( 8) CCCATTTT 1 chr9:126596624-126596704 ( 36) CCCATTTT 1 chr6:47208164-47208244 ( 36) CCCATTTT 1 chr6:39204663-39204743 ( 44) CCCATTTT 1 chr2:220339208-220339288 ( 16) CCCATTTT 1 chr19:3761017-3761097 ( 31) CCCATTTT 1 chr17:47668361-47668441 ( 31) CCCATTTT 1 chr19:45871529-45871609 ( 17) CCCATTTT 1 chr5:131809031-131809111 ( 43) CCCATTTT 1 chr7:149481446-149481526 ( 18) CCCATTTT 1 chr6:30724309-30724389 ( 14) CCCATTTT 1 chr21:37947690-37947770 ( 14) CCCATTTT 1 chr1:7008152-7008232 ( 29) CCCATTTT 1 chr22:25798480-25798560 ( 15) CCCATTTT 1 chr2:65632231-65632311 ( 37) CCCATTTT 1 chr11:64699920-64700000 ( 29) CCCATTTT 1 chr8:128985642-128985722 ( 6) CCCATTTT 1 chr1:45082088-45082168 ( 35) CCCATTTT 1 chr12:68872705-68872785 ( 30) CCCATTTT 1 chr10:73397218-73397298 ( 30) CCCATTTT 1 chr12:71002172-71002252 ( 6) CCCATTTT 1 chr2:12176586-12176666 ( 30) CCCATTTT 1 chr6:31739237-31739317 ( 36) CCCATTTT 1 chr5:125823431-125823511 ( 7) CCCATTTT 1 chr19:45076582-45076662 ( 18) CCCATTTT 1 chr5:148809517-148809597 ( 3) CCCATTTT 1 chr3:14578483-14578563 ( 18) CCCATTTT 1 chr10:21447364-21447444 ( 26) CCCATTTT 1 chr19:17726804-17726884 ( 29) CCCATTTT 1 chr8:98792849-98792929 ( 28) CCCATTTT 1 chr1:234779624-234779704 ( 18) CCCATTTT 1 chr20:45317259-45317339 ( 25) CCCATTTT 1 chr1:31231140-31231220 ( 27) CCCATTTT 1 chr7:106860427-106860507 ( 23) CCCATTTT 1 chr1:24011041-24011121 ( 35) CCCATTTT 1 chr21:39846894-39846974 ( 26) CCCATTTT 1 chr2:12213498-12213578 ( 14) CCCATTTT 1 chr10:21451961-21452041 ( 18) CCCATTTT 1 chr19:17665906-17665986 ( 25) CTCATTTT 1 chr3:5078256-5078336 ( 12) CCCAGTTT 1 chr16:19151211-19151291 ( 27) CTCAGTTT 1 chr19:3362680-3362760 ( 28) CTCAGTTT 1 chr11:64519223-64519303 ( 27) CTCAGTTT 1 chr6:16056838-16056918 ( 31) CTCAGTTT 1 chr20:33755751-33755831 ( 46) CTCAGTTT 1 chr1:37905118-37905198 ( 38) CTCAGTTT 1 chr3:9792894-9792974 ( 41) CTCAGTTT 1 chr22:26829025-26829105 ( 57) CTCAGTTT 1 chr4:81049350-81049430 ( 33) CTCAGTTT 1 chr17:37832975-37833055 ( 20) CTCAGTTT 1 chr1:54627626-54627706 ( 50) CTCAGTTT 1 chr10:80864193-80864273 ( 30) CTCAGTTT 1 chr12:117038924-11703900 ( 12) CTCAGTTT 1 chr6:130071755-130071835 ( 34) CTCAGTTT 1 chr9:126204243-126204323 ( 27) CTCAGTTT 1 chr6:43671413-43671493 ( 38) CTCAGTTT 1 chr1:17329157-17329237 ( 40) CTCAGTTT 1 chr16:56486486-56486566 ( 44) CTCAGTTT 1 chr20:44547525-44547605 ( 29) CTCAGTTT 1 chr1:39280979-39281059 ( 28) CTCAGTTT 1 chr20:56017011-56017091 ( 37) CTCAGTTT 1 chr5:138053254-138053334 ( 18) CTCAGTTT 1 chr1:11801702-11801782 ( 44) CTCAGTTT 1 chr5:125874428-125874508 ( 48) CTCAGTTT 1 chr1:53139340-53139420 ( 46) CTCAGTTT 1 chr20:37002350-37002430 ( 56) CTCAGTTT 1 chr16:85382226-85382306 ( 37) CTCAGTTT 1 chr12:111845980-11184606 ( 39) CTCAGTTT 1 chr6:3397699-3397779 ( 30) CTCAGTTT 1 chr3:72328044-72328124 ( 30) CTCAGTTT 1 chr16:85431724-85431804 ( 29) CTCAGTTT 1 chr15:41100142-41100222 ( 52) CTCAGTTT 1 chr16:79932745-79932825 ( 60) CTCAGTTT 1 chr2:197041287-197041367 ( 33) CTCAGTTT 1 chr21:36850094-36850174 ( 45) CTCAGTTT 1 chr9:119210919-119210999 ( 34) CTCAGTTT 1 chr3:5262922-5263002 ( 7) CTCAGTTT 1 chr10:63236451-63236531 ( 38) CTCAGTTT 1 chr13:42849829-42849909 ( 31) CTCAGTTT 1 chr3:5094098-5094178 ( 43) CTCAGTTT 1 chr1:40366001-40366081 ( 21) CTCAGTTT 1 chr12:11920136-11920216 ( 20) CTCAGTTT 1 chr7:50315173-50315253 ( 36) CTCAGTTT 1 chr5:10278212-10278292 ( 35) CCCATTTG 1 chr12:125480236-12548031 ( 25) CCCATTTG 1 chr10:21455556-21455636 ( 41) CCCATTTG 1 chr19:35632958-35633038 ( 28) CCCATTTG 1 chr10:49697305-49697385 ( 25) CCCATTTG 1 chr10:73486911-73486991 ( 14) CCCATCTT 1 chr6:35243799-35243879 ( 45) CTCAGTTG 1 chr10:22517264-22517344 ( 33) CTCAGTTG 1 chr1:206916886-206916966 ( 26) CTCAGCTT 1 chr9:123838076-123838156 ( 17) CCCATTTA 1 chr10:74071523-74071603 ( 19) CCCATCTG 1 chr19:7937879-7937959 ( 32) CCCATCTG 1 chr3:5044741-5044821 ( 66) CCCATTTA 1 chr11:73562281-73562361 ( 22) CCCATTTA 1 chr9:132020494-132020574 ( 18) CCCATTTA 1 chr1:26941282-26941362 ( 34) CCCATTTA 1 chr10:113942913-11394299 ( 30) CCCATCTG 1 chr5:134771815-134771895 ( 29) CCCATCTG 1 chr1:211784236-211784316 ( 15) CCCACTTT 1 chr16:23879006-23879086 ( 30) CCCACTTT 1 chr1:236665897-236665977 ( 22) CCCACTTT 1 chr7:25933750-25933830 ( 19) CCCATTTA 1 chr14:24613839-24613919 ( 16) CCCATTTA 1 chr5:138855590-138855670 ( 44) CCCATTTC 1 chr1:156835808-156835888 ( 8) CCCATTTC 1 chr9:117159651-117159731 ( 34) CCCATTTC 1 chr4:13528445-13528525 ( 19) CCCAATTT 1 chr19:42427278-42427358 ( 15) CCCATTTC 1 chr1:120279416-120279496 ( 20) CCCATTTC 1 chr1:168059332-168059412 ( 22) CCCATTTC 1 chr1:234913697-234913777 ( 26) CCCATTTC 1 chr16:80007392-80007472 ( 33) CCCAATTT 1 chr4:76603909-76603989 ( 52) CTCATCTG 1 chr1:53170188-53170268 ( 24) CTCATCTG 1 chr11:65254221-65254301 ( 41) CTCATCTG 1 chr10:72458989-72459069 ( 30) CTCATCTG 1 chr10:63538040-63538120 ( 49) CTCATCTG 1 chr6:14694723-14694803 ( 44) CTCATCTG 1 chr11:34628470-34628550 ( 38) CTCATCTG 1 chr1:211756488-211756568 ( 56) CTCACTTT 1 chr2:46818867-46818947 ( 40) CTCATCTG 1 chr10:63581969-63582049 ( 51) CTCATCTG 1 chr1:12805777-12805857 ( 38) CTCATCTG 1 chr22:21099994-21100074 ( 47) CTCATCTG 1 chr1:15398577-15398657 ( 52) CTCATCTG 1 chr19:50703098-50703178 ( 23) CTCATCTG 1 chr6:159072114-159072194 ( 43) CTCATCTG 1 chr1:154126690-154126770 ( 27) CTCACTTT 1 chr3:70340362-70340442 ( 62) CTCATCTG 1 chr2:178568041-178568121 ( 1) CTCATTTA 1 chr15:55611902-55611982 ( 42) CTCAATTT 1 chr16:80032244-80032324 ( 41) CTCAATTT 1 chr1:201521674-201521754 ( 27) CTCAATTT 1 chr12:57945042-57945122 ( 43) TCCATTTT 1 chrX:117669227-117669307 ( 50) CTCAATTT 1 chr1:51899021-51899101 ( 30) TCCATTTT 1 chr12:48168136-48168216 ( 43) TCCATTTT 1 chrX:117473058-117473138 ( 33) CTCAATTT 1 chr16:50775392-50775472 ( 28) TCCATTTT 1 chr16:79963272-79963352 ( 22) TCCATTTT 1 chr16:27562019-27562099 ( 39) TCCATTTT 1 chr20:37592603-37592683 ( 13) CTCAGTTA 1 chr7:103632010-103632090 ( 1) TTCATTTT 1 chr6:15899125-15899205 ( 15) CTCAGTTA 1 chr5:115694978-115695058 ( 24) TCCAGTTT 1 chr3:14295592-14295672 ( 49) CCCACTTG 1 chr10:71095491-71095571 ( 20) CCCACTTG 1 chr9:129621539-129621619 ( 49) CTCAGTTC 1 chr16:15601945-15602025 ( 36) CCCATCTA 1 chr7:107541099-107541179 ( 18) CTCACTTG 1 chr2:33088535-33088615 ( 66) TTCAGTTT 1 chr10:73007708-73007788 ( 73) CTCAATTG 1 chr1:207126740-207126820 ( 50) CCCATCTC 1 chr11:33957778-33957858 ( 49) CTCATCTA 1 chr1:234728948-234729028 ( 20) CCCATTCT 1 chr10:72981559-72981639 ( 73) TTCATTTG 1 chr9:132253217-132253297 ( 37) CTCAACTT 1 chr16:87293218-87293298 ( 30) CTCAGCTC 1 chr18:23942151-23942231 ( 34) CCCACCTG 1 chr19:55679119-55679199 ( 32) CTCAGTCT 1 chr12:7795678-7795758 ( 62) CTCAATTA 1 chr6:30168496-30168576 ( 45) TCCATCTG 1 chr19:56859847-56859927 ( 67) CTCAATTA 1 chr2:201674738-201674818 ( 37) TCCATCTG 1 chr6:7993815-7993895 ( 31) CCCATCCT 1 chr10:121028087-12102816 ( 27) TTCATCTG 1 chr1:24235098-24235178 ( 45) TTCATCTG 1 chr7:75364560-75364640 ( 64) TCCAGCTG 1 chr19:3143106-3143186 ( 27) TCCACTTG 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CYCAKTTT MEME-2 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 18250 bayes= 7.6892 E= 2.1e-171 -1417 209 -1417 -169 -1417 132 -1417 73 -1417 223 -1417 -1417 180 -1417 -1417 -1417 -227 -198 46 106 -1417 -25 -1417 155 -1417 -371 -1417 181 -192 -198 -7 124 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CYCAKTTT MEME-2 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 184 E= 2.1e-171 0.000000 0.913043 0.000000 0.086957 0.000000 0.532609 0.000000 0.467391 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.059783 0.054348 0.298913 0.586957 0.000000 0.179348 0.000000 0.820652 0.000000 0.016304 0.000000 0.983696 0.076087 0.054348 0.206522 0.663043 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CYCAKTTT MEME-2 regular expression -------------------------------------------------------------------------------- C[CT]CA[TG]TT[TG] -------------------------------------------------------------------------------- Time 8.53 secs. ******************************************************************************** ******************************************************************************** MOTIF CAGATRAG MEME-3 width = 8 sites = 102 llr = 816 E-value = 2.6e-071 ******************************************************************************** -------------------------------------------------------------------------------- Motif CAGATRAG MEME-3 Description -------------------------------------------------------------------------------- Simplified A :a:a:471 pos.-specific C a::::::: probability G ::a:3639 matrix T ::::7::: bits 2.2 * 2.0 * * 1.8 * * 1.6 **** Relative 1.3 **** * Entropy 1.1 ***** * (11.5 bits) 0.9 ******** 0.7 ******** 0.4 ******** 0.2 ******** 0.0 -------- Multilevel CAGATGAG consensus GAG sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CAGATRAG MEME-3 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr14:24739833-24739913 37 1.47e-05 ccccatttta cagatgag caaactgagg chr1:53599577-53599657 6 1.47e-05 tttta cagatgag gaaactgagg chr12:125480236-12548031 34 1.47e-05 tcccatttga cagatgag gaaactgaga chr6:21995690-21995770 20 1.47e-05 tcccattttt cagatgag aaaactgagg chr1:15775503-15775583 47 1.47e-05 gcccatttta cagatgag aaaactgagg chr6:158403789-158403869 27 1.47e-05 ccccattttg cagatgag caaactgagg chr1:120315101-120315181 12 1.47e-05 gcccatttta cagatgag gaaactgagg chr1:23900228-23900308 17 1.47e-05 agccattata cagatgag gaaacaggct chr2:68641740-68641820 17 1.47e-05 tcccatttta cagatgag gatattgtgg chr6:47208164-47208244 45 1.47e-05 ccccatttta cagatgag gaaactgagg chr6:39204663-39204743 53 1.47e-05 gcccatttta cagatgag gaaactgagt chr2:220339208-220339288 25 1.47e-05 ccccatttta cagatgag gagactgagg chr8:128924572-128924652 39 1.47e-05 acccactcta cagatgag gaaactgagg chr17:47668361-47668441 40 1.47e-05 acccatttta cagatgag gaaactaagg chr7:149481446-149481526 27 1.47e-05 tcccattttg cagatgag gaaactgagg chr6:30724309-30724389 23 1.47e-05 acccatttta cagatgag aaaaatgagg chr21:37947690-37947770 23 1.47e-05 tcccatttta cagatgag gaaacagagg chr19:35632958-35633038 37 1.47e-05 ccccatttga cagatgag gaaactaagg chr3:14400462-14400542 43 1.47e-05 ccgcatttct cagatgag ccaaactgag chr11:64699920-64700000 38 1.47e-05 gcccatttta cagatgag aaaactgagg chr12:68872705-68872785 39 1.47e-05 acccatttta cagatgag gaaactgagg chr10:73397218-73397298 39 1.47e-05 tcccatttta cagatgag gaaattgagg chr10:79832488-79832568 19 1.47e-05 ggccatttta cagatgag gaaatcaagg chr9:132020494-132020574 27 1.47e-05 ccccatttat cagatgag gcaaagcaag chr2:12176586-12176666 39 1.47e-05 ccccatttta cagatgag aaaactgaga chr4:13528445-13528525 28 1.47e-05 acccaattta cagatgag caaactgagg chr5:148809517-148809597 12 1.47e-05 ccccatttta cagatgag aaaaactgag chr1:234728948-234729028 29 1.47e-05 tcccattcta cagatgag gagactgagg chr19:17726804-17726884 38 1.47e-05 ccccatttta cagatgag aaaactgagg chr8:98792849-98792929 37 1.47e-05 tcccatttta cagatgag aaaactgagg chr1:24011041-24011121 44 1.47e-05 acccatttta cagatgag gaaaactgag chr16:50775392-50775472 37 1.47e-05 ctccatttta cagatgag gacattgagg chr10:21451961-21452041 27 1.47e-05 acccatttta cagatgag gatactgagg chr10:71095491-71095571 29 2.57e-05 acccacttga cagatggg aagactgagg chr10:21447364-21447444 35 2.57e-05 gcccattttg cagatggg ataactgaga chr12:114108707-11410878 8 2.57e-05 cattttg cagatggg acaactgagg chr7:106860427-106860507 32 2.57e-05 ccccatttta cagatggg taaacagagg chr1:168059332-168059412 31 2.57e-05 ccccatttca cagatggg gaaagttgag chr9:126596624-126596704 45 5.66e-05 ccccatttta cagataag gaaattgagg chr5:131809031-131809111 20 5.66e-05 ccctgtgaga cagataag acaaatgatg chr1:45082088-45082168 64 5.66e-05 aactgaggtg cagaggag ttaagtgac chr12:71002172-71002252 15 5.66e-05 tcccatttta cagataag aaaactgagg chr12:48168136-48168216 52 5.66e-05 gtccatttta cagataag gaaactgagg chr12:116822103-11682218 42 7.98e-05 tcccatttta cagatagg aaaaccaagg chr1:7008152-7008232 38 7.98e-05 tcccatttta cagatagg cagactgagg chr3:4550861-4550941 18 9.48e-05 agctgaggtt cagagaag ttatggaagt chr19:45076582-45076662 47 9.48e-05 aactgacgct cagagaag aagagtcatt chr10:49697305-49697385 54 9.48e-05 aaccgaggct cagagaag ttaagaactt chr2:12213498-12213578 41 9.48e-05 gaaactgagg cagagaag ttaagcaatt chr1:235119415-235119495 21 9.48e-05 aaccaaggct cagagaag tgaagtgact chr2:178568041-178568121 29 9.48e-05 aaacagggct cagagaag ttaagtaact chr12:104994335-10499441 42 1.06e-04 agcagagaca cagagagg ttaggtagtt chr9:123838076-123838156 46 1.06e-04 cactgaggac cagagagg ttaagtaatt chr5:115694978-115695058 51 1.06e-04 gaaataagcc cagagagg ttcagtaact chr1:156835808-156835888 37 1.06e-04 ttctgagaat cagagagg ttgagtttct chr19:45799290-45799370 27 1.06e-04 acataaggca cagagagg ttaagtaact chr10:73838843-73838923 40 1.06e-04 aattgaggct cagagagg ttaagtgact chr2:85196957-85197037 28 1.06e-04 agtcagggca cagagagg tttagagatc chr15:64203520-64203600 9 1.06e-04 tatcagca cagagagg ttaagtaatt chr1:12261539-12261619 9 1.06e-04 aaaaggca cagagagg ttaagtaact chr10:80807489-80807569 21 1.06e-04 atttgatgct cagagagg ctaagtaact chr21:34494965-34495045 54 1.06e-04 aaatgaagct cagagagg ttgagtaatt chr6:138197864-138197944 16 1.06e-04 agttaaagct cagagagg tcaactaacc chr6:12014364-12014444 20 1.06e-04 atctgatctt cagagagg ttaagtaacc chr7:135688993-135689073 4 1.06e-04 gca cagagagg ttaagtcagt chr1:31231140-31231220 56 1.06e-04 aactgaggca cagagagg gggaatgatt chr7:137634780-137634860 29 1.06e-04 aatgcaagct cagagagg ctttacaact chr2:145043015-145043095 37 1.06e-04 tgagtgaact cagagagg ttaagtaact chr22:21454042-21454122 21 1.06e-04 tataaaggcc cagagagg ttaagtaaat chr2:16921216-16921296 18 1.06e-04 aactgaagcc cagagagg ttaagtaact chr12:57558392-57558472 21 1.26e-04 ccccatttta cagatgaa aaaactgagg chr2:178258732-178258812 8 1.26e-04 catttta cagatgaa taaattaagt chr19:3761017-3761097 40 1.26e-04 tcccatttta cagatgaa gaaactgagc chr5:125823431-125823511 16 1.26e-04 tcccatttta cagatgaa gaaactgaga chr14:24613839-24613919 25 1.26e-04 acccatttaa cagatgaa aaaactgagt chr11:73562281-73562361 31 1.40e-04 tcccatttaa cagatgtg gaaatcaagg chr19:42427278-42427358 24 1.40e-04 gcccatttca cagatgtg gaaactgagg chr1:26941282-26941362 42 1.54e-04 ttcccattta cagatgac aaaactgagg chr10:73486911-73486991 23 1.54e-04 ccccatctta cagatgac aagactgagg chr10:21455556-21455636 50 1.99e-04 gcccatttga cagatgga gaaactgatg chr22:25798480-25798560 24 1.99e-04 ccccatttta cagctgag aaaactgagg chr15:64194663-64194743 34 1.99e-04 caccatttca cagattag aaaactgagg chr7:25933750-25933830 28 1.99e-04 ccccatttac cagctgag caaactgagg chr16:80007392-80007472 42 1.99e-04 ccccaattta cagattag tagactgagg chr5:173123343-173123423 46 2.54e-04 gcccattatc ctgatgag gaaaactgag chr1:51899021-51899101 39 2.54e-04 ttccatttta cagataaa taaactgagg chr1:211784236-211784316 24 2.54e-04 ccccacttta ctgatgag gaagttgagg chr1:120279416-120279496 29 2.54e-04 acccatttca cagataaa gaaactgagg chr1:234913697-234913777 35 2.54e-04 ccccatttca ctgatgag gaaatcaagg chr6:107275134-107275214 7 2.84e-04 AGTAGC CAGATATG GAAATCTATG chr16:27562019-27562099 68 2.84e-04 aactgaggct cagaggtg ttaag chr20:45317259-45317339 34 3.06e-04 tcccatttta caggtgag aaaaccgagg chr16:22218788-22218868 69 3.48e-04 ttggaaagag tagatgag tatg chr3:14578483-14578563 27 3.48e-04 ccccatttta cagctggg aaaactgagg chr16:87293218-87293298 39 3.78e-04 cctcagctct cagataac aatagtgcct chr14:75765051-75765131 22 3.78e-04 tgactttgca cagataac ttctcggaac chr6:6738469-6738549 32 4.77e-04 gcccattttt cagatgat gaaactgagg chr6:31739237-31739317 45 4.77e-04 acccatttta cagatgat gaaatcgagg chr15:85451095-85451175 42 5.64e-04 ccccatttta tagatggg aacactgagg chr3:70340362-70340442 30 6.10e-04 ctattgacct caggtaag ttacattatc chr1:180472792-180472872 27 6.79e-04 gaaatcagca cagagtgg ttaagtaact chr10:63538040-63538120 13 6.79e-04 tgcctcttaa tagataag caacttgagc -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CAGATRAG MEME-3 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr14:24739833-24739913 1.5e-05 36_[+3]_36 chr1:53599577-53599657 1.5e-05 5_[+3]_67 chr12:125480236-12548031 1.5e-05 33_[+3]_39 chr6:21995690-21995770 1.5e-05 19_[+3]_53 chr1:15775503-15775583 1.5e-05 46_[+3]_26 chr6:158403789-158403869 1.5e-05 26_[+3]_46 chr1:120315101-120315181 1.5e-05 11_[+3]_61 chr1:23900228-23900308 1.5e-05 16_[+3]_56 chr2:68641740-68641820 1.5e-05 16_[+3]_56 chr6:47208164-47208244 1.5e-05 44_[+3]_28 chr6:39204663-39204743 1.5e-05 52_[+3]_20 chr2:220339208-220339288 1.5e-05 24_[+3]_48 chr8:128924572-128924652 1.5e-05 38_[+3]_34 chr17:47668361-47668441 1.5e-05 39_[+3]_33 chr7:149481446-149481526 1.5e-05 26_[+3]_46 chr6:30724309-30724389 1.5e-05 22_[+3]_50 chr21:37947690-37947770 1.5e-05 22_[+3]_50 chr19:35632958-35633038 1.5e-05 36_[+3]_36 chr3:14400462-14400542 1.5e-05 42_[+3]_30 chr11:64699920-64700000 1.5e-05 37_[+3]_35 chr12:68872705-68872785 1.5e-05 38_[+3]_34 chr10:73397218-73397298 1.5e-05 38_[+3]_34 chr10:79832488-79832568 1.5e-05 18_[+3]_54 chr9:132020494-132020574 1.5e-05 26_[+3]_46 chr2:12176586-12176666 1.5e-05 38_[+3]_34 chr4:13528445-13528525 1.5e-05 27_[+3]_45 chr5:148809517-148809597 1.5e-05 11_[+3]_61 chr1:234728948-234729028 1.5e-05 28_[+3]_44 chr19:17726804-17726884 1.5e-05 37_[+3]_35 chr8:98792849-98792929 1.5e-05 36_[+3]_36 chr1:24011041-24011121 1.5e-05 43_[+3]_29 chr16:50775392-50775472 1.5e-05 36_[+3]_36 chr10:21451961-21452041 1.5e-05 26_[+3]_46 chr10:71095491-71095571 2.6e-05 28_[+3]_44 chr10:21447364-21447444 2.6e-05 34_[+3]_38 chr12:114108707-11410878 2.6e-05 7_[+3]_65 chr7:106860427-106860507 2.6e-05 31_[+3]_41 chr1:168059332-168059412 2.6e-05 30_[+3]_42 chr9:126596624-126596704 5.7e-05 44_[+3]_28 chr5:131809031-131809111 5.7e-05 19_[+3]_53 chr1:45082088-45082168 5.7e-05 63_[+3]_9 chr12:71002172-71002252 5.7e-05 14_[+3]_58 chr12:48168136-48168216 5.7e-05 51_[+3]_21 chr12:116822103-11682218 8e-05 41_[+3]_31 chr1:7008152-7008232 8e-05 37_[+3]_35 chr3:4550861-4550941 9.5e-05 17_[+3]_55 chr19:45076582-45076662 9.5e-05 46_[+3]_26 chr10:49697305-49697385 9.5e-05 53_[+3]_19 chr2:12213498-12213578 9.5e-05 40_[+3]_32 chr1:235119415-235119495 9.5e-05 20_[+3]_52 chr2:178568041-178568121 9.5e-05 28_[+3]_44 chr12:104994335-10499441 0.00011 41_[+3]_31 chr9:123838076-123838156 0.00011 45_[+3]_27 chr5:115694978-115695058 0.00011 50_[+3]_22 chr1:156835808-156835888 0.00011 36_[+3]_36 chr19:45799290-45799370 0.00011 26_[+3]_46 chr10:73838843-73838923 0.00011 39_[+3]_33 chr2:85196957-85197037 0.00011 27_[+3]_45 chr15:64203520-64203600 0.00011 8_[+3]_64 chr1:12261539-12261619 0.00011 8_[+3]_64 chr10:80807489-80807569 0.00011 20_[+3]_52 chr21:34494965-34495045 0.00011 53_[+3]_19 chr6:138197864-138197944 0.00011 15_[+3]_57 chr6:12014364-12014444 0.00011 19_[+3]_53 chr7:135688993-135689073 0.00011 3_[+3]_69 chr1:31231140-31231220 0.00011 55_[+3]_17 chr7:137634780-137634860 0.00011 28_[+3]_44 chr2:145043015-145043095 0.00011 36_[+3]_36 chr22:21454042-21454122 0.00011 20_[+3]_52 chr2:16921216-16921296 0.00011 17_[+3]_55 chr12:57558392-57558472 0.00013 20_[+3]_52 chr2:178258732-178258812 0.00013 7_[+3]_65 chr19:3761017-3761097 0.00013 39_[+3]_33 chr5:125823431-125823511 0.00013 15_[+3]_57 chr14:24613839-24613919 0.00013 24_[+3]_48 chr11:73562281-73562361 0.00014 30_[+3]_42 chr19:42427278-42427358 0.00014 23_[+3]_49 chr1:26941282-26941362 0.00015 41_[+3]_31 chr10:73486911-73486991 0.00015 22_[+3]_50 chr10:21455556-21455636 0.0002 49_[+3]_23 chr22:25798480-25798560 0.0002 23_[+3]_49 chr15:64194663-64194743 0.0002 33_[+3]_39 chr7:25933750-25933830 0.0002 27_[+3]_45 chr16:80007392-80007472 0.0002 41_[+3]_31 chr5:173123343-173123423 0.00025 45_[+3]_27 chr1:51899021-51899101 0.00025 38_[+3]_34 chr1:211784236-211784316 0.00025 23_[+3]_49 chr1:120279416-120279496 0.00025 28_[+3]_44 chr1:234913697-234913777 0.00025 34_[+3]_38 chr6:107275134-107275214 0.00028 6_[+3]_66 chr16:27562019-27562099 0.00028 67_[+3]_5 chr20:45317259-45317339 0.00031 33_[+3]_39 chr16:22218788-22218868 0.00035 68_[+3]_4 chr3:14578483-14578563 0.00035 26_[+3]_46 chr16:87293218-87293298 0.00038 38_[+3]_34 chr14:75765051-75765131 0.00038 21_[+3]_51 chr6:6738469-6738549 0.00048 31_[+3]_41 chr6:31739237-31739317 0.00048 44_[+3]_28 chr15:85451095-85451175 0.00056 41_[+3]_31 chr3:70340362-70340442 0.00061 29_[+3]_43 chr1:180472792-180472872 0.00068 26_[+3]_46 chr10:63538040-63538120 0.00068 12_[+3]_60 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CAGATRAG MEME-3 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF CAGATRAG width=8 seqs=102 chr14:24739833-24739913 ( 37) CAGATGAG 1 chr1:53599577-53599657 ( 6) CAGATGAG 1 chr12:125480236-12548031 ( 34) CAGATGAG 1 chr6:21995690-21995770 ( 20) CAGATGAG 1 chr1:15775503-15775583 ( 47) CAGATGAG 1 chr6:158403789-158403869 ( 27) CAGATGAG 1 chr1:120315101-120315181 ( 12) CAGATGAG 1 chr1:23900228-23900308 ( 17) CAGATGAG 1 chr2:68641740-68641820 ( 17) CAGATGAG 1 chr6:47208164-47208244 ( 45) CAGATGAG 1 chr6:39204663-39204743 ( 53) CAGATGAG 1 chr2:220339208-220339288 ( 25) CAGATGAG 1 chr8:128924572-128924652 ( 39) CAGATGAG 1 chr17:47668361-47668441 ( 40) CAGATGAG 1 chr7:149481446-149481526 ( 27) CAGATGAG 1 chr6:30724309-30724389 ( 23) CAGATGAG 1 chr21:37947690-37947770 ( 23) CAGATGAG 1 chr19:35632958-35633038 ( 37) CAGATGAG 1 chr3:14400462-14400542 ( 43) CAGATGAG 1 chr11:64699920-64700000 ( 38) CAGATGAG 1 chr12:68872705-68872785 ( 39) CAGATGAG 1 chr10:73397218-73397298 ( 39) CAGATGAG 1 chr10:79832488-79832568 ( 19) CAGATGAG 1 chr9:132020494-132020574 ( 27) CAGATGAG 1 chr2:12176586-12176666 ( 39) CAGATGAG 1 chr4:13528445-13528525 ( 28) CAGATGAG 1 chr5:148809517-148809597 ( 12) CAGATGAG 1 chr1:234728948-234729028 ( 29) CAGATGAG 1 chr19:17726804-17726884 ( 38) CAGATGAG 1 chr8:98792849-98792929 ( 37) CAGATGAG 1 chr1:24011041-24011121 ( 44) CAGATGAG 1 chr16:50775392-50775472 ( 37) CAGATGAG 1 chr10:21451961-21452041 ( 27) CAGATGAG 1 chr10:71095491-71095571 ( 29) CAGATGGG 1 chr10:21447364-21447444 ( 35) CAGATGGG 1 chr12:114108707-11410878 ( 8) CAGATGGG 1 chr7:106860427-106860507 ( 32) CAGATGGG 1 chr1:168059332-168059412 ( 31) CAGATGGG 1 chr9:126596624-126596704 ( 45) CAGATAAG 1 chr5:131809031-131809111 ( 20) CAGATAAG 1 chr1:45082088-45082168 ( 64) CAGAGGAG 1 chr12:71002172-71002252 ( 15) CAGATAAG 1 chr12:48168136-48168216 ( 52) CAGATAAG 1 chr12:116822103-11682218 ( 42) CAGATAGG 1 chr1:7008152-7008232 ( 38) CAGATAGG 1 chr3:4550861-4550941 ( 18) CAGAGAAG 1 chr19:45076582-45076662 ( 47) CAGAGAAG 1 chr10:49697305-49697385 ( 54) CAGAGAAG 1 chr2:12213498-12213578 ( 41) CAGAGAAG 1 chr1:235119415-235119495 ( 21) CAGAGAAG 1 chr2:178568041-178568121 ( 29) CAGAGAAG 1 chr12:104994335-10499441 ( 42) CAGAGAGG 1 chr9:123838076-123838156 ( 46) CAGAGAGG 1 chr5:115694978-115695058 ( 51) CAGAGAGG 1 chr1:156835808-156835888 ( 37) CAGAGAGG 1 chr19:45799290-45799370 ( 27) CAGAGAGG 1 chr10:73838843-73838923 ( 40) CAGAGAGG 1 chr2:85196957-85197037 ( 28) CAGAGAGG 1 chr15:64203520-64203600 ( 9) CAGAGAGG 1 chr1:12261539-12261619 ( 9) CAGAGAGG 1 chr10:80807489-80807569 ( 21) CAGAGAGG 1 chr21:34494965-34495045 ( 54) CAGAGAGG 1 chr6:138197864-138197944 ( 16) CAGAGAGG 1 chr6:12014364-12014444 ( 20) CAGAGAGG 1 chr7:135688993-135689073 ( 4) CAGAGAGG 1 chr1:31231140-31231220 ( 56) CAGAGAGG 1 chr7:137634780-137634860 ( 29) CAGAGAGG 1 chr2:145043015-145043095 ( 37) CAGAGAGG 1 chr22:21454042-21454122 ( 21) CAGAGAGG 1 chr2:16921216-16921296 ( 18) CAGAGAGG 1 chr12:57558392-57558472 ( 21) CAGATGAA 1 chr2:178258732-178258812 ( 8) CAGATGAA 1 chr19:3761017-3761097 ( 40) CAGATGAA 1 chr5:125823431-125823511 ( 16) CAGATGAA 1 chr14:24613839-24613919 ( 25) CAGATGAA 1 chr11:73562281-73562361 ( 31) CAGATGTG 1 chr19:42427278-42427358 ( 24) CAGATGTG 1 chr1:26941282-26941362 ( 42) CAGATGAC 1 chr10:73486911-73486991 ( 23) CAGATGAC 1 chr10:21455556-21455636 ( 50) CAGATGGA 1 chr22:25798480-25798560 ( 24) CAGCTGAG 1 chr15:64194663-64194743 ( 34) CAGATTAG 1 chr7:25933750-25933830 ( 28) CAGCTGAG 1 chr16:80007392-80007472 ( 42) CAGATTAG 1 chr5:173123343-173123423 ( 46) CTGATGAG 1 chr1:51899021-51899101 ( 39) CAGATAAA 1 chr1:211784236-211784316 ( 24) CTGATGAG 1 chr1:120279416-120279496 ( 29) CAGATAAA 1 chr1:234913697-234913777 ( 35) CTGATGAG 1 chr6:107275134-107275214 ( 7) CAGATATG 1 chr16:27562019-27562099 ( 68) CAGAGGTG 1 chr20:45317259-45317339 ( 34) CAGGTGAG 1 chr16:22218788-22218868 ( 69) TAGATGAG 1 chr3:14578483-14578563 ( 27) CAGCTGGG 1 chr16:87293218-87293298 ( 39) CAGATAAC 1 chr14:75765051-75765131 ( 22) CAGATAAC 1 chr6:6738469-6738549 ( 32) CAGATGAT 1 chr6:31739237-31739317 ( 45) CAGATGAT 1 chr15:85451095-85451175 ( 42) TAGATGGG 1 chr3:70340362-70340442 ( 30) CAGGTAAG 1 chr1:180472792-180472872 ( 27) CAGAGTGG 1 chr10:63538040-63538120 ( 13) TAGATAAG 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CAGATRAG MEME-3 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 18250 bayes= 8.62841 E= 2.6e-071 -1332 218 -1332 -326 175 -1332 -1332 -326 -1332 -1332 220 -1332 172 -286 -347 -1332 -1332 -1332 34 137 37 -1332 146 -326 121 -1332 44 -284 -188 -245 199 -384 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CAGATRAG MEME-3 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 102 E= 2.6e-071 0.000000 0.970588 0.000000 0.029412 0.970588 0.000000 0.000000 0.029412 0.000000 0.000000 1.000000 0.000000 0.950980 0.029412 0.019608 0.000000 0.000000 0.000000 0.274510 0.725490 0.372549 0.000000 0.598039 0.029412 0.666667 0.000000 0.294118 0.039216 0.078431 0.039216 0.862745 0.019608 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CAGATRAG MEME-3 regular expression -------------------------------------------------------------------------------- CAGA[TG][GA][AG]G -------------------------------------------------------------------------------- Time 11.68 secs. ******************************************************************************** ******************************************************************************** MOTIF CYYMTCTG MEME-4 width = 8 sites = 69 llr = 568 E-value = 6.4e-037 ******************************************************************************** -------------------------------------------------------------------------------- Motif CYYMTCTG MEME-4 Description -------------------------------------------------------------------------------- Simplified A :::3:::: pos.-specific C a6461a:: probability G :::::::a matrix T :46:9:a: bits 2.2 * * 2.0 * * * 1.8 * *** 1.6 * *** Relative 1.3 * **** Entropy 1.1 * **** (11.9 bits) 0.9 ** **** 0.7 ******** 0.4 ******** 0.2 ******** 0.0 -------- Multilevel CCTCTCTG consensus TCA sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CYYMTCTG MEME-4 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr20:33755751-33755831 35 1.01e-05 agtcacttaa cctctctg agcctcagtt chrX:109164328-109164408 22 1.01e-05 agttacttaa cctctctg aggctcaaat chr19:3143106-3143186 62 1.01e-05 agtcactaaa cctctctg gtcctctgtg chr17:38704482-38704562 60 1.01e-05 agttacttaa cctctctg agcctaagtt chr3:141086446-141086526 70 1.01e-05 agtgtcttaa cctctctg agc chr7:107541099-107541179 53 1.01e-05 agttaattga cctctctg aacttcttgt chr1:17329157-17329237 29 1.01e-05 agtcacttaa cctctctg tgcctcagtt chr1:211756488-211756568 45 1.01e-05 agttactaaa cctctctg ggcctcactt chr12:104644285-10464436 45 1.01e-05 agttgcataa cctctctg agtctgtgtc chr16:79946653-79946733 33 1.01e-05 ggttgcctac cctctctg tgcttttgtt chr1:204674032-204674112 42 1.01e-05 agtcacttaa cctctctg agttcagaac chr16:87293218-87293298 10 1.01e-05 gttactagg cctctctg ttcctccatc chr8:130841007-130841087 51 1.01e-05 agtctctcaa cctctctg ttcctctgta chr9:117158223-117158303 45 1.01e-05 agtggcttta cctctctg aacctcaggc chr17:73816344-73816424 20 1.01e-05 agtgattgag cctctctg ccttagtttc chr5:125874428-125874508 37 1.01e-05 agttactcaa cctctctg tgcctcagtt chr19:7937879-7937959 56 1.01e-05 GGGCATGTGC CCTCTCTG AGGACCAATA chr9:129621539-129621619 38 1.01e-05 agtcactcaa cctctctg agcctcagtt chr3:5044741-5044821 6 1.01e-05 cctaa cctctctg agcctccatg chr2:33088535-33088615 55 1.01e-05 aggaatgcaa cctctctg agcttcagtt chr10:72981559-72981639 42 1.01e-05 agttgcttac cctctctg agcttagttc chr10:63236451-63236531 27 1.01e-05 atttacttaa cctctctg tgcctcagtt chr1:54627626-54627706 39 1.78e-05 ttcttaacct cccctctg tatctcagtt chr10:73514423-73514503 6 1.78e-05 cttaa cccctctg tgcctccgtt chr9:126058600-126058680 19 1.78e-05 attgtttcac cccctctg cctacaacct chr22:26829025-26829105 46 4.46e-05 agttatgtaa cttctctg agcctcagtt chr11:65254221-65254301 21 4.46e-05 gtttacttaa cttctctg ggcctccatt chr11:64519223-64519303 36 6.51e-05 cctcagtttg cccatctg tgaaatgggg chr9:132253217-132253297 46 6.51e-05 cctcaacttt ctcctctg taaaatgggc chr7:50315173-50315253 46 6.51e-05 ctcagtttta cccatctg caaaatgggg chr1:37905118-37905198 47 8.29e-05 cctcagtttc cttatctg taaaatgggC chr20:37002350-37002430 65 8.29e-05 cctcagtttc cttatctg taaaatgg chr14:75765051-75765131 49 8.29e-05 cctcagtgtt cttatctg tgaaatggga chr9:119210919-119210999 43 8.29e-05 cctcagtttc cttatctg taaaatgggg chr19:3362680-3362760 36 9.65e-05 gcctcagttt ctcatctg taaaatggga chr6:35243799-35243879 54 9.65e-05 cctcagttgc ctcatctg taaaatgggt chr17:37832975-37833055 29 9.65e-05 cctcagtttt ctcatctg caaaatggga chr9:126204243-126204323 36 9.65e-05 actcagtttc ctcatctg tgaaatgggc chr6:43671413-43671493 47 9.65e-05 cctcagtttc ctcatctg tacaatgggg chr10:22517264-22517344 42 9.65e-05 cctcagttgc ctcatctg tacaatggca chrX:117669227-117669307 59 9.65e-05 cctcaatttc ctcatctg taaaatgggc chr12:111845980-11184606 48 9.65e-05 cctcagtttc ctcatctg tgaaatgggt chr16:85431724-85431804 38 9.65e-05 cctcagtttc ctcatctg caaaatgggc chr2:197041287-197041367 42 9.65e-05 cctcagtttt ctcatctg tgaaatgggg chr21:36850094-36850174 54 9.65e-05 tctcagtttt ctcatctg taaaatgggt chr3:5094098-5094178 53 9.65e-05 ctcagttttt ctcatctg taaaatggag chr10:74071523-74071603 46 1.04e-04 actagtaata cctccctg ataaagttac chr1:201521674-201521754 16 1.04e-04 gttcctacaa cctccctg agcctcaatt chr1:40366001-40366081 61 1.04e-04 ttcattcttc cctccctg tctcaGGGAT chr1:53139340-53139420 55 1.20e-04 gctcagttta cctgtctg ttaaatggga chr1:156660159-156660239 54 1.59e-04 ccaggaagga cttccctg gaggaatgtg chrX:117473058-117473138 42 1.59e-04 cctcaatttc cctacctg taaaatgggt chr10:119523190-11952327 43 1.59e-04 agtcacttaa ccactctg agcccttgtg chr12:117038924-11703900 21 1.82e-04 cctcagtttt cccacctg tcaaatgggc chr1:156632083-156632163 28 1.82e-04 gatctgactt ccgctctg catgctgcaa chr19:55679119-55679199 21 1.96e-04 gaccagtcac cctttctg agcctcagtc chr10:72458989-72459069 10 2.19e-04 gttacttaa cccttctg aacctctatt chr3:14295592-14295672 58 2.19e-04 acccacttgc catctctg tgcctcaggt chr15:55611902-55611982 51 2.94e-04 cctcaatttg ctcgtctg taaaatgggg chr12:224132-224212 17 2.94e-04 AACAGTGTGG CCAATCTG ATATGtgcag chr10:73007708-73007788 46 2.94e-04 ctttactttc ctactctg tataatgggt chr1:154126690-154126770 36 2.94e-04 cctcactttc ctcgtctg tgaaatggga chr1:11801702-11801782 6 3.25e-04 ctggc ctgctctg tgaccttggg chr16:85382226-85382306 72 3.25e-04 gttggtcatt ctcacctg g chr15:85451095-85451175 17 3.43e-04 cagagagttt cttttctg gtcatgtccc chr5:138053254-138053334 27 3.88e-04 tctcagtttc cacatctg tacaatggga chr1:15398577-15398657 6 3.88e-04 ggccc cacatctg attctaagca chr1:39280979-39281059 17 4.02e-04 agttaattaa tctctctg accctcagtt chr2:145043015-145043095 56 4.12e-04 taagtaactg tccctctg tcacacagct -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CYYMTCTG MEME-4 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr20:33755751-33755831 1e-05 34_[+4]_38 chrX:109164328-109164408 1e-05 21_[+4]_51 chr19:3143106-3143186 1e-05 61_[+4]_11 chr17:38704482-38704562 1e-05 59_[+4]_13 chr3:141086446-141086526 1e-05 69_[+4]_3 chr7:107541099-107541179 1e-05 52_[+4]_20 chr1:17329157-17329237 1e-05 28_[+4]_44 chr1:211756488-211756568 1e-05 44_[+4]_28 chr12:104644285-10464436 1e-05 44_[+4]_28 chr16:79946653-79946733 1e-05 32_[+4]_40 chr1:204674032-204674112 1e-05 41_[+4]_31 chr16:87293218-87293298 1e-05 9_[+4]_63 chr8:130841007-130841087 1e-05 50_[+4]_22 chr9:117158223-117158303 1e-05 44_[+4]_28 chr17:73816344-73816424 1e-05 19_[+4]_53 chr5:125874428-125874508 1e-05 36_[+4]_36 chr19:7937879-7937959 1e-05 55_[+4]_17 chr9:129621539-129621619 1e-05 37_[+4]_35 chr3:5044741-5044821 1e-05 5_[+4]_67 chr2:33088535-33088615 1e-05 54_[+4]_18 chr10:72981559-72981639 1e-05 41_[+4]_31 chr10:63236451-63236531 1e-05 26_[+4]_46 chr1:54627626-54627706 1.8e-05 38_[+4]_34 chr10:73514423-73514503 1.8e-05 5_[+4]_67 chr9:126058600-126058680 1.8e-05 18_[+4]_54 chr22:26829025-26829105 4.5e-05 45_[+4]_27 chr11:65254221-65254301 4.5e-05 20_[+4]_52 chr11:64519223-64519303 6.5e-05 35_[+4]_37 chr9:132253217-132253297 6.5e-05 45_[+4]_27 chr7:50315173-50315253 6.5e-05 45_[+4]_27 chr1:37905118-37905198 8.3e-05 46_[+4]_26 chr20:37002350-37002430 8.3e-05 64_[+4]_8 chr14:75765051-75765131 8.3e-05 48_[+4]_24 chr9:119210919-119210999 8.3e-05 42_[+4]_30 chr19:3362680-3362760 9.7e-05 35_[+4]_37 chr6:35243799-35243879 9.7e-05 53_[+4]_19 chr17:37832975-37833055 9.7e-05 28_[+4]_44 chr9:126204243-126204323 9.7e-05 35_[+4]_37 chr6:43671413-43671493 9.7e-05 46_[+4]_26 chr10:22517264-22517344 9.7e-05 41_[+4]_31 chrX:117669227-117669307 9.7e-05 58_[+4]_14 chr12:111845980-11184606 9.7e-05 47_[+4]_25 chr16:85431724-85431804 9.7e-05 37_[+4]_35 chr2:197041287-197041367 9.7e-05 41_[+4]_31 chr21:36850094-36850174 9.7e-05 53_[+4]_19 chr3:5094098-5094178 9.7e-05 52_[+4]_20 chr10:74071523-74071603 0.0001 45_[+4]_27 chr1:201521674-201521754 0.0001 15_[+4]_57 chr1:40366001-40366081 0.0001 60_[+4]_12 chr1:53139340-53139420 0.00012 54_[+4]_18 chr1:156660159-156660239 0.00016 53_[+4]_19 chrX:117473058-117473138 0.00016 41_[+4]_31 chr10:119523190-11952327 0.00016 42_[+4]_30 chr12:117038924-11703900 0.00018 20_[+4]_52 chr1:156632083-156632163 0.00018 27_[+4]_45 chr19:55679119-55679199 0.0002 20_[+4]_52 chr10:72458989-72459069 0.00022 9_[+4]_63 chr3:14295592-14295672 0.00022 57_[+4]_15 chr15:55611902-55611982 0.00029 50_[+4]_22 chr12:224132-224212 0.00029 16_[+4]_56 chr10:73007708-73007788 0.00029 45_[+4]_27 chr1:154126690-154126770 0.00029 35_[+4]_37 chr1:11801702-11801782 0.00033 5_[+4]_67 chr16:85382226-85382306 0.00033 71_[+4]_1 chr15:85451095-85451175 0.00034 16_[+4]_56 chr5:138053254-138053334 0.00039 26_[+4]_46 chr1:15398577-15398657 0.00039 5_[+4]_67 chr1:39280979-39281059 0.0004 16_[+4]_56 chr2:145043015-145043095 0.00041 55_[+4]_17 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CYYMTCTG MEME-4 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF CYYMTCTG width=8 seqs=69 chr20:33755751-33755831 ( 35) CCTCTCTG 1 chrX:109164328-109164408 ( 22) CCTCTCTG 1 chr19:3143106-3143186 ( 62) CCTCTCTG 1 chr17:38704482-38704562 ( 60) CCTCTCTG 1 chr3:141086446-141086526 ( 70) CCTCTCTG 1 chr7:107541099-107541179 ( 53) CCTCTCTG 1 chr1:17329157-17329237 ( 29) CCTCTCTG 1 chr1:211756488-211756568 ( 45) CCTCTCTG 1 chr12:104644285-10464436 ( 45) CCTCTCTG 1 chr16:79946653-79946733 ( 33) CCTCTCTG 1 chr1:204674032-204674112 ( 42) CCTCTCTG 1 chr16:87293218-87293298 ( 10) CCTCTCTG 1 chr8:130841007-130841087 ( 51) CCTCTCTG 1 chr9:117158223-117158303 ( 45) CCTCTCTG 1 chr17:73816344-73816424 ( 20) CCTCTCTG 1 chr5:125874428-125874508 ( 37) CCTCTCTG 1 chr19:7937879-7937959 ( 56) CCTCTCTG 1 chr9:129621539-129621619 ( 38) CCTCTCTG 1 chr3:5044741-5044821 ( 6) CCTCTCTG 1 chr2:33088535-33088615 ( 55) CCTCTCTG 1 chr10:72981559-72981639 ( 42) CCTCTCTG 1 chr10:63236451-63236531 ( 27) CCTCTCTG 1 chr1:54627626-54627706 ( 39) CCCCTCTG 1 chr10:73514423-73514503 ( 6) CCCCTCTG 1 chr9:126058600-126058680 ( 19) CCCCTCTG 1 chr22:26829025-26829105 ( 46) CTTCTCTG 1 chr11:65254221-65254301 ( 21) CTTCTCTG 1 chr11:64519223-64519303 ( 36) CCCATCTG 1 chr9:132253217-132253297 ( 46) CTCCTCTG 1 chr7:50315173-50315253 ( 46) CCCATCTG 1 chr1:37905118-37905198 ( 47) CTTATCTG 1 chr20:37002350-37002430 ( 65) CTTATCTG 1 chr14:75765051-75765131 ( 49) CTTATCTG 1 chr9:119210919-119210999 ( 43) CTTATCTG 1 chr19:3362680-3362760 ( 36) CTCATCTG 1 chr6:35243799-35243879 ( 54) CTCATCTG 1 chr17:37832975-37833055 ( 29) CTCATCTG 1 chr9:126204243-126204323 ( 36) CTCATCTG 1 chr6:43671413-43671493 ( 47) CTCATCTG 1 chr10:22517264-22517344 ( 42) CTCATCTG 1 chrX:117669227-117669307 ( 59) CTCATCTG 1 chr12:111845980-11184606 ( 48) CTCATCTG 1 chr16:85431724-85431804 ( 38) CTCATCTG 1 chr2:197041287-197041367 ( 42) CTCATCTG 1 chr21:36850094-36850174 ( 54) CTCATCTG 1 chr3:5094098-5094178 ( 53) CTCATCTG 1 chr10:74071523-74071603 ( 46) CCTCCCTG 1 chr1:201521674-201521754 ( 16) CCTCCCTG 1 chr1:40366001-40366081 ( 61) CCTCCCTG 1 chr1:53139340-53139420 ( 55) CCTGTCTG 1 chr1:156660159-156660239 ( 54) CTTCCCTG 1 chrX:117473058-117473138 ( 42) CCTACCTG 1 chr10:119523190-11952327 ( 43) CCACTCTG 1 chr12:117038924-11703900 ( 21) CCCACCTG 1 chr1:156632083-156632163 ( 28) CCGCTCTG 1 chr19:55679119-55679199 ( 21) CCTTTCTG 1 chr10:72458989-72459069 ( 10) CCCTTCTG 1 chr3:14295592-14295672 ( 58) CATCTCTG 1 chr15:55611902-55611982 ( 51) CTCGTCTG 1 chr12:224132-224212 ( 17) CCAATCTG 1 chr10:73007708-73007788 ( 46) CTACTCTG 1 chr1:154126690-154126770 ( 36) CTCGTCTG 1 chr1:11801702-11801782 ( 6) CTGCTCTG 1 chr16:85382226-85382306 ( 72) CTCACCTG 1 chr15:85451095-85451175 ( 17) CTTTTCTG 1 chr5:138053254-138053334 ( 27) CACATCTG 1 chr1:15398577-15398657 ( 6) CACATCTG 1 chr1:39280979-39281059 ( 17) TCTCTCTG 1 chr2:145043015-145043095 ( 56) TCCCTCTG 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CYYMTCTG MEME-4 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 18250 bayes= 8.85237 E= 6.4e-037 -1275 218 -1275 -328 -273 144 -1275 42 -273 82 -290 97 27 140 -232 -269 -1275 -107 -1275 168 -1275 223 -1275 -1275 -1275 -1275 -1275 183 -1275 -1275 220 -1275 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CYYMTCTG MEME-4 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 69 E= 6.4e-037 0.000000 0.971014 0.000000 0.028986 0.043478 0.579710 0.000000 0.376812 0.043478 0.376812 0.028986 0.550725 0.347826 0.565217 0.043478 0.043478 0.000000 0.101449 0.000000 0.898551 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CYYMTCTG MEME-4 regular expression -------------------------------------------------------------------------------- C[CT][TC][CA]TCTG -------------------------------------------------------------------------------- Time 14.76 secs. ******************************************************************************** ******************************************************************************** MOTIF CACACAGC MEME-5 width = 8 sites = 30 llr = 309 E-value = 2.3e-025 ******************************************************************************** -------------------------------------------------------------------------------- Motif CACACAGC MEME-5 Description -------------------------------------------------------------------------------- Simplified A :9:a:a:: pos.-specific C 91a:9::a probability G ::::1:a: matrix T 11:::::: bits 2.2 * ** 2.0 * ** 1.8 * ** *** 1.6 * ****** Relative 1.3 * ****** Entropy 1.1 ******** (14.9 bits) 0.9 ******** 0.7 ******** 0.4 ******** 0.2 ******** 0.0 -------- Multilevel CACACAGC consensus sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CACACAGC MEME-5 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr12:104994335-10499441 70 1.09e-05 tccttaaggt cacacagc tgg chr1:156835808-156835888 65 1.09e-05 ggactgaggt cacacagc tgtaagtg chr19:45799290-45799370 55 1.09e-05 tatccaaggc cacacagc tggtaagtca chr10:73838843-73838923 68 1.09e-05 taggcagggt cacacagc aattg chr3:4550861-4550941 46 1.09e-05 tgcttaagga cacacagc tggtaattta chr10:63570162-63570242 55 1.09e-05 tactcagggt cacacagc aaattagtga chr2:85196957-85197037 45 1.09e-05 gtttagagat cacacagc cagcaaatgg chr1:23900228-23900308 63 1.09e-05 tgttcaaggt cacacagc atggaagagg chr2:68641740-68641820 65 1.09e-05 tgtccaaggt cacacagc taggaatt chr7:149481446-149481526 73 1.09e-05 cttgcagggt cacacagc chr1:12261539-12261619 37 1.09e-05 tgtccaaggt cacacagc aagtgagtgg chr10:80807489-80807569 49 1.09e-05 tgttcaaggt cacacagc aggaggactt chr6:138197864-138197944 44 1.09e-05 tgcctaatgc cacacagc ttgatagtga chr7:103632010-103632090 54 1.09e-05 tgtccaaggt cacacagc tagtgagtgc chr7:135688993-135689073 32 1.09e-05 catccaaggt cacacagc gagtcagtgg chr12:114108707-11410878 55 1.09e-05 tgctcaaggc cacacagc acacatagca chr2:145043015-145043095 65 1.09e-05 gtccctctgt cacacagc tagaaagt chr22:21454042-21454122 49 1.09e-05 aatccagagt cacacagc cagggagtgg chr2:16921216-16921296 46 1.09e-05 tgctcaaggt cacacagc agtttagtac chr10:73486911-73486991 71 1.09e-05 tgttcagggt cacacagc gg chr1:235119415-235119495 49 1.09e-05 tactcaaggt cacacagc ataagggtgg chr2:178568041-178568121 57 1.09e-05 tttccaaggt cacacagc tagcttgtac chr12:125480236-12548031 52 2.19e-05 gaaactgaga cacagagc agtgaagtgg chr8:128985642-128985722 62 2.19e-05 tgcccaaagg cacagagc tggtactgtt chr19:17358126-17358206 72 3.00e-05 TCGGGTTCTG CCCACAGC C chr2:12176586-12176666 57 4.06e-05 aaaactgaga ctcacagc agtttgttga chr1:180472792-180472872 55 5.49e-05 tgtcaaaggc tacacagc tagcaaatgg chr1:53599577-53599657 54 5.49e-05 tgtccaaggt tacacagc caagccaggc chr4:81049350-81049430 3 6.30e-05 aa cccagagc aaggtagtta chr1:37905118-37905198 30 7.38e-05 cacctaacac ctcagagc ctcagtttcc -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CACACAGC MEME-5 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr12:104994335-10499441 1.1e-05 69_[+5]_3 chr1:156835808-156835888 1.1e-05 64_[+5]_8 chr19:45799290-45799370 1.1e-05 54_[+5]_18 chr10:73838843-73838923 1.1e-05 67_[+5]_5 chr3:4550861-4550941 1.1e-05 45_[+5]_27 chr10:63570162-63570242 1.1e-05 54_[+5]_18 chr2:85196957-85197037 1.1e-05 44_[+5]_28 chr1:23900228-23900308 1.1e-05 62_[+5]_10 chr2:68641740-68641820 1.1e-05 64_[+5]_8 chr7:149481446-149481526 1.1e-05 72_[+5] chr1:12261539-12261619 1.1e-05 36_[+5]_36 chr10:80807489-80807569 1.1e-05 48_[+5]_24 chr6:138197864-138197944 1.1e-05 43_[+5]_29 chr7:103632010-103632090 1.1e-05 53_[+5]_19 chr7:135688993-135689073 1.1e-05 31_[+5]_41 chr12:114108707-11410878 1.1e-05 54_[+5]_18 chr2:145043015-145043095 1.1e-05 64_[+5]_8 chr22:21454042-21454122 1.1e-05 48_[+5]_24 chr2:16921216-16921296 1.1e-05 45_[+5]_27 chr10:73486911-73486991 1.1e-05 70_[+5]_2 chr1:235119415-235119495 1.1e-05 48_[+5]_24 chr2:178568041-178568121 1.1e-05 56_[+5]_16 chr12:125480236-12548031 2.2e-05 51_[+5]_21 chr8:128985642-128985722 2.2e-05 61_[+5]_11 chr19:17358126-17358206 3e-05 71_[+5]_1 chr2:12176586-12176666 4.1e-05 56_[+5]_16 chr1:180472792-180472872 5.5e-05 54_[+5]_18 chr1:53599577-53599657 5.5e-05 53_[+5]_19 chr4:81049350-81049430 6.3e-05 2_[+5]_70 chr1:37905118-37905198 7.4e-05 29_[+5]_43 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CACACAGC MEME-5 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF CACACAGC width=8 seqs=30 chr12:104994335-10499441 ( 70) CACACAGC 1 chr1:156835808-156835888 ( 65) CACACAGC 1 chr19:45799290-45799370 ( 55) CACACAGC 1 chr10:73838843-73838923 ( 68) CACACAGC 1 chr3:4550861-4550941 ( 46) CACACAGC 1 chr10:63570162-63570242 ( 55) CACACAGC 1 chr2:85196957-85197037 ( 45) CACACAGC 1 chr1:23900228-23900308 ( 63) CACACAGC 1 chr2:68641740-68641820 ( 65) CACACAGC 1 chr7:149481446-149481526 ( 73) CACACAGC 1 chr1:12261539-12261619 ( 37) CACACAGC 1 chr10:80807489-80807569 ( 49) CACACAGC 1 chr6:138197864-138197944 ( 44) CACACAGC 1 chr7:103632010-103632090 ( 54) CACACAGC 1 chr7:135688993-135689073 ( 32) CACACAGC 1 chr12:114108707-11410878 ( 55) CACACAGC 1 chr2:145043015-145043095 ( 65) CACACAGC 1 chr22:21454042-21454122 ( 49) CACACAGC 1 chr2:16921216-16921296 ( 46) CACACAGC 1 chr10:73486911-73486991 ( 71) CACACAGC 1 chr1:235119415-235119495 ( 49) CACACAGC 1 chr2:178568041-178568121 ( 57) CACACAGC 1 chr12:125480236-12548031 ( 52) CACAGAGC 1 chr8:128985642-128985722 ( 62) CACAGAGC 1 chr19:17358126-17358206 ( 72) CCCACAGC 1 chr2:12176586-12176666 ( 57) CTCACAGC 1 chr1:180472792-180472872 ( 55) TACACAGC 1 chr1:53599577-53599657 ( 54) TACACAGC 1 chr4:81049350-81049430 ( 3) CCCAGAGC 1 chr1:37905118-37905198 ( 30) CTCAGAGC 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CACACAGC MEME-5 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 18250 bayes= 9.17126 E= 2.3e-025 -1155 213 -1155 -207 159 -168 -1155 -207 -1155 223 -1155 -1155 180 -1155 -1155 -1155 -1155 202 -70 -1155 180 -1155 -1155 -1155 -1155 -1155 220 -1155 -1155 223 -1155 -1155 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CACACAGC MEME-5 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 30 E= 2.3e-025 0.000000 0.933333 0.000000 0.066667 0.866667 0.066667 0.000000 0.066667 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.866667 0.133333 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CACACAGC MEME-5 regular expression -------------------------------------------------------------------------------- CACACAGC -------------------------------------------------------------------------------- Time 17.69 secs. ******************************************************************************** ******************************************************************************** SUMMARY OF MOTIFS ******************************************************************************** -------------------------------------------------------------------------------- Combined block diagrams: non-overlapping sites with p-value < 0.0001 -------------------------------------------------------------------------------- SEQUENCE NAME COMBINED P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr2:178568041-178568121 2.07e-05 28_[+3(9.48e-05)]_20_[+5(1.09e-05)]_\ 16 chr1:235119415-235119495 2.61e-03 20_[+3(9.48e-05)]_20_[+5(1.09e-05)]_\ 24 chr9:126058600-126058680 1.54e-02 18_[+4(1.78e-05)]_54 chr10:119523190-11952327 8.79e-02 80 chr1:206916886-206916966 8.91e-03 16_[+1(5.39e-05)]_56 chr3:70340362-70340442 1.28e-04 61_[+4(9.65e-05)]_11 chr10:21451961-21452041 4.26e-05 17_[+2(1.76e-05)]_1_[+3(1.47e-05)]_\ 46 chr14:24613839-24613919 6.52e-04 33_[+1(5.39e-05)]_39 chr7:50315173-50315253 2.40e-05 35_[+2(7.21e-05)]_2_[+4(6.51e-05)]_\ 1_[+1(3.44e-05)]_18 chr10:73486911-73486991 2.57e-06 70_[+5(1.09e-05)]_2 chr12:11920136-11920216 5.17e-04 19_[+2(7.21e-05)]_10_[+1(3.44e-05)]_\ 35 chr16:80007392-80007472 1.69e-03 80 chr16:27562019-27562099 4.92e-04 56_[+1(5.39e-05)]_16 chr16:79963272-79963352 1.04e-03 39_[+1(5.39e-05)]_33 chr1:234913697-234913777 2.27e-02 80 chr2:12213498-12213578 1.01e-04 13_[+2(1.76e-05)]_10_[+1(5.39e-05)]_\ 1_[+3(9.48e-05)]_32 chr21:39846894-39846974 2.06e-03 25_[+2(1.76e-05)]_11_[+1(5.39e-05)]_\ 28 chr9:132253217-132253297 1.53e-04 45_[+4(6.51e-05)]_1_[+1(3.44e-05)]_\ 18 chr1:168059332-168059412 6.19e-04 30_[+3(2.57e-05)]_42 chr16:50775392-50775472 1.76e-03 36_[+3(1.47e-05)]_36 chr1:154126690-154126770 3.33e-03 80 chr1:40366001-40366081 3.34e-03 20_[+2(7.21e-05)]_52 chr1:120279416-120279496 6.03e-04 37_[+1(5.39e-05)]_35 chr3:5094098-5094178 9.25e-04 42_[+2(7.21e-05)]_2_[+4(9.65e-05)]_\ 20 chr7:25933750-25933830 2.04e-05 36_[+1(5.39e-05)]_36 chr1:236665897-236665977 2.91e-03 39_[+1(5.39e-05)]_33 chr2:16921216-16921296 8.85e-04 45_[+5(1.09e-05)]_27 chr6:107275134-107275214 1.96e-01 80 chr13:42849829-42849909 5.03e-03 30_[+2(7.21e-05)]_42 chr10:63236451-63236531 3.89e-05 26_[+4(1.01e-05)]_3_[+2(7.21e-05)]_\ 10_[+1(3.44e-05)]_17 chr19:44646089-44646169 1.94e-02 45_[+1(3.44e-05)]_27 chr3:5262922-5263002 6.70e-03 6_[+2(7.21e-05)]_66 chr22:21454042-21454122 1.55e-03 48_[+5(1.09e-05)]_24 chr6:159072114-159072194 8.01e-04 42_[+4(9.65e-05)]_30 chr1:24011041-24011121 2.64e-05 34_[+2(1.76e-05)]_1_[+3(1.47e-05)]_\ 2_[+1(5.39e-05)]_19 chr9:119210919-119210999 4.96e-05 33_[+2(7.21e-05)]_1_[+4(8.29e-05)]_\ 1_[+1(3.44e-05)]_21 chr2:201674738-201674818 3.72e-03 45_[+1(3.44e-05)]_27 chr7:106860427-106860507 1.46e-04 22_[+2(1.76e-05)]_1_[+3(2.57e-05)]_\ 41 chr6:15899125-15899205 2.11e-02 80 chr19:56859847-56859927 2.44e-01 80 chr21:36850094-36850174 3.28e-05 44_[+2(7.21e-05)]_1_[+4(9.65e-05)]_\ 1_[+1(3.44e-05)]_10 chrX:117473058-117473138 6.51e-04 50_[+1(3.44e-05)]_22 chr19:50703098-50703178 4.07e-05 22_[+4(9.65e-05)]_1_[+1(3.44e-05)]_\ 41 chr2:145043015-145043095 2.08e-04 64_[+5(1.09e-05)]_8 chr16:23879006-23879086 3.46e-02 80 chr1:207126740-207126820 8.51e-03 80 chr7:137634780-137634860 8.70e-03 80 chr2:24703296-24703376 2.98e-02 39_[+5(9.89e-05)]_33 chr1:31231140-31231220 1.02e-05 26_[+2(1.76e-05)]_10_[+1(5.39e-05)]_\ 28 chr2:197041287-197041367 5.50e-04 32_[+2(7.21e-05)]_1_[+4(9.65e-05)]_\ 31 chr16:79932745-79932825 6.01e-02 59_[+2(7.21e-05)]_13 chr15:41100142-41100222 1.40e-04 51_[+2(7.21e-05)]_10_[+1(3.44e-05)]_\ 3 chr5:154238596-154238676 2.78e-01 80 chr10:73007708-73007788 9.38e-03 80 chr16:85431724-85431804 8.23e-05 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38_[+4(1.78e-05)]_3_[+2(7.21e-05)]_\ 1_[+4(9.65e-05)]_1_[+1(3.44e-05)]_5 chr3:141086446-141086526 5.48e-03 69_[+4(1.01e-05)]_3 chr10:72458989-72459069 5.87e-03 29_[+4(9.65e-05)]_43 chr19:45799290-45799370 5.70e-04 54_[+5(1.09e-05)]_18 chr8:37757596-37757676 1.91e-01 80 chr17:37832975-37833055 7.07e-05 19_[+2(7.21e-05)]_1_[+4(9.65e-05)]_\ 1_[+1(3.44e-05)]_35 chr6:21995690-21995770 2.16e-06 10_[+2(1.76e-05)]_1_[+3(1.47e-05)]_\ 1_[+1(5.39e-05)]_44 chr1:201521674-201521754 7.07e-05 44_[+1(3.44e-05)]_28 chr6:35243799-35243879 2.64e-04 53_[+4(9.65e-05)]_1_[+1(3.44e-05)]_\ 10 chr6:6738469-6738549 1.88e-04 22_[+2(1.76e-05)]_10_[+1(5.39e-05)]_\ 32 chr1:156835808-156835888 1.60e-05 64_[+5(1.09e-05)]_8 chr12:125480236-12548031 1.80e-07 24_[+2(8.57e-05)]_1_[+3(1.47e-05)]_\ 1_[+1(5.39e-05)]_1_[+5(2.19e-05)]_21 chr1:53599577-53599657 4.94e-05 5_[+3(1.47e-05)]_1_[+1(5.39e-05)]_\ 31_[+5(5.49e-05)]_19 chr17:38704482-38704562 2.58e-03 59_[+4(1.01e-05)]_13 chr4:81049350-81049430 4.39e-05 2_[+5(6.30e-05)]_22_[+2(7.21e-05)]_\ 10_[+1(3.44e-05)]_22 chr5:173123343-173123423 2.98e-03 55_[+1(5.39e-05)]_17 chr20:37592603-37592683 8.00e-03 80 chr11:65254221-65254301 3.89e-04 20_[+4(4.46e-05)]_12_[+4(9.65e-05)]_\ 1_[+1(3.44e-05)]_23 chr19:17665906-17665986 1.35e-03 24_[+2(4.07e-05)]_48 chr3:5078256-5078336 6.29e-04 11_[+2(5.43e-05)]_26_[+1(3.44e-05)]_\ 27 chr18:32610822-32610902 3.57e-01 80 chr22:26829025-26829105 2.84e-03 45_[+4(4.46e-05)]_3_[+2(7.21e-05)]_\ 1_[+4(9.65e-05)]_7 chr7:75364560-75364640 3.21e-02 80 chr16:80032244-80032324 1.30e-03 58_[+1(3.44e-05)]_14 chr1:53170188-53170268 4.16e-04 23_[+4(9.65e-05)]_1_[+1(3.44e-05)]_\ 40 chr5:10278212-10278292 2.24e-03 34_[+2(8.57e-05)]_10_[+1(5.39e-05)]_\ 20 chr19:3143106-3143186 1.74e-02 61_[+4(1.01e-05)]_11 chr3:9792894-9792974 2.89e-03 40_[+2(7.21e-05)]_10_[+1(3.44e-05)]_\ 14 chr14:24739833-24739913 1.64e-05 27_[+2(1.76e-05)]_1_[+3(1.47e-05)]_\ 1_[+1(5.39e-05)]_27 chrX:109164328-109164408 1.04e-03 21_[+4(1.01e-05)]_17_[+1(3.44e-05)]_\ 26 chr12:57558392-57558472 9.84e-05 11_[+2(1.76e-05)]_10_[+1(5.39e-05)]_\ 43 chr5:138855590-138855670 2.55e-02 80 chr12:116822103-11682218 6.04e-04 32_[+2(1.76e-05)]_1_[+3(7.98e-05)]_\ 31 chr1:37905118-37905198 2.80e-06 29_[+5(7.38e-05)]_[+2(7.21e-05)]_1_\ [+4(8.29e-05)]_1_[+1(3.44e-05)]_17 chr12:31000334-31000414 6.16e-01 80 chr10:121028087-12102816 5.92e-04 35_[+1(3.44e-05)]_37 chr5:115694978-115695058 1.82e-03 80 chr15:55611902-55611982 1.99e-03 59_[+1(3.44e-05)]_13 chr15:85451095-85451175 5.23e-05 32_[+2(1.76e-05)]_40 chr4:76603909-76603989 4.89e-04 51_[+4(9.65e-05)]_1_[+1(3.44e-05)]_\ 12 chr1:180472792-180472872 1.55e-02 54_[+5(5.49e-05)]_18 chr10:74071523-74071603 6.48e-05 18_[+4(6.51e-05)]_1_[+1(3.44e-05)]_\ 45 chr6:6805271-6805351 5.04e-01 80 chr20:33755751-33755831 1.44e-04 34_[+4(1.01e-05)]_3_[+2(7.21e-05)]_\ 27 chr6:16056838-16056918 2.87e-03 30_[+2(7.21e-05)]_10_[+1(3.44e-05)]_\ 24 chr11:64519223-64519303 2.15e-04 26_[+2(7.21e-05)]_1_[+4(6.51e-05)]_\ 37 chr9:123838076-123838156 3.39e-03 80 chr19:3362680-3362760 2.08e-05 27_[+2(7.21e-05)]_[+4(9.65e-05)]_1_\ [+1(3.44e-05)]_28 chr19:1054438-1054518 4.25e-02 80 chr16:19151211-19151291 5.38e-05 26_[+2(7.21e-05)]_10_[+1(3.44e-05)]_\ 28 chr19:923982-924062 4.56e-04 17_[+2(1.76e-05)]_10_[+1(5.39e-05)]_\ 37 chr19:55679119-55679199 6.58e-04 80 chr12:104994335-10499441 3.99e-06 12_[+2(1.76e-05)]_49_[+5(1.09e-05)]_\ 3 chr16:15601945-15602025 2.52e-03 80 -------------------------------------------------------------------------------- ******************************************************************************** ******************************************************************************** Stopped because requested number of motifs (5) found. ******************************************************************************** CPU: c22n09.farnam.hpc.yale.internal ********************************************************************************